Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 2009.6 1008 100.0
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 0.0e+00 1953.7 1041 95.4
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1943.7 1041 95.1
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 0.0e+00 1874.0 1041 92.3
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 0.0e+00 1762.7 1053 87.3
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1656.7 1076 81.3
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 0.0e+00 1523.8 1086 73.8
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 0.0e+00 1494.2 1103 73.2
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 0.0e+00 1486.5 1096 73.6
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 0.0e+00 1482.2 1110 71.9
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 0.0e+00 1365.1 1100 67.1
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 0.0e+00 1258.4 1110 62.9
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 0.0e+00 1110.5 834 69.7
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 1.3e-289 1000.0 1112 50.9
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 3.2e-283 978.8 1111 50.6
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 7.8e-282 974.2 1112 51.0
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 2.5e-280 969.1 1111 51.0
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 8.1e-279 964.1 1101 50.1
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 5.8e-277 958.0 1114 48.8
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 2.5e-264 916.0 1091 48.8
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 5.3e-262 908.3 1093 48.1
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 1.0e-260 904.0 1084 48.6
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 1.3e-260 903.7 1059 47.7
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 1.4e-259 900.2 1052 48.0
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 6.7e-257 891.3 1106 47.8
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 4.3e-256 888.6 1095 48.0
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 1.3e-255 887.1 1087 46.4
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 1.3e-255 887.1 1040 48.8
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 8.2e-255 884.4 1105 46.8
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 5.3e-254 881.7 1080 47.1
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 6.9e-254 881.3 1129 45.2
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 7.7e-253 877.9 1083 47.6
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 3.8e-252 875.5 1109 47.2
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 1.1e-251 874.0 1050 46.1
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 4.2e-251 872.1 1125 45.7
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 4.2e-251 872.1 1052 48.2
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 1.2e-250 870.5 1060 47.6
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 1.6e-250 870.2 1055 48.2
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 8.8e-249 864.4 1063 48.3
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 9.7e-248 860.9 1127 43.8
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 1.3e-247 860.5 1124 46.4
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 3.7e-247 859.0 993 48.8
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 5.3e-246 855.1 1055 47.9
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 2.0e-245 853.2 1081 45.7
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 2.0e-245 853.2 1080 46.3
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 7.7e-245 851.3 1105 45.8
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 7.7e-245 851.3 1092 44.8
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 7.4e-240 834.7 1120 44.3
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 9.7e-240 834.3 520 83.8
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 2.4e-238 829.7 1069 46.9
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 3.5e-237 825.9 1065 44.8
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 3.5e-237 825.9 1085 44.8
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 2.2e-236 823.2 1110 44.3
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 2.1e-234 816.6 1089 43.8
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 6.1e-234 815.1 1062 45.8
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 8.0e-234 814.7 1087 43.7
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 1.0e-233 814.3 1070 44.3
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 6.7e-233 811.6 1052 44.2
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 1.1e-230 804.3 1103 44.0
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 1.9e-227 793.5 1099 42.5
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 4.2e-227 792.3 780 53.6
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 1.6e-226 790.4 1123 42.5
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 6.1e-226 788.5 978 46.7
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 3.7e-223 779.2 728 57.8
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 2.0e-221 773.5 1024 42.9
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 3.5e-221 772.7 1095 42.8
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 6.5e-220 768.5 1048 43.3
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 1.2e-216 757.7 1080 42.6
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 3.7e-215 752.7 842 47.9
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 4.5e-213 745.7 724 56.9
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 6.6e-212 741.9 1067 41.3
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 4.2e-211 739.2 778 50.6
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 1.0e-209 734.6 1071 42.4
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 2.6e-208 729.9 743 51.7
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 5.7e-208 728.8 743 52.8
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.0e-204 718.0 688 56.5
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 3.1e-201 706.4 950 44.4
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 1.7e-199 700.7 755 48.7
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 4.1e-198 696.0 752 49.1
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 4.6e-197 692.6 923 44.5
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 1.0e-188 664.8 777 49.3
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 5.1e-188 662.5 1022 41.6
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 3.3e-179 633.3 907 42.3
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 5.3e-169 599.4 737 46.9
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 3.0e-156 557.0 606 50.8
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 1.4e-145 521.5 977 35.0
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 6.9e-145 519.2 992 34.9
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 1.1e-131 475.3 692 43.4
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 1.4e-108 398.7 807 32.6
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 2.0e-107 394.8 365 59.2
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 1.7e-98 365.2 537 43.9
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 1.8e-84 318.5 627 36.0
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 7.8e-80 303.1 1072 28.9
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 3.4e-59 234.6 525 32.2
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 4.0e-36 157.9 129 56.6
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 6.9e-36 157.1 190 50.5
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 6.9e-36 157.1 185 51.4
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 2.5e-33 148.7 168 50.6
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 2.3e-31 142.1 127 58.3
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 3.1e-28 131.7 160 52.5
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 4.1e-28 131.3 89 66.3
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 1.5e-27 129.4 93 61.3
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 7.2e-25 120.6 160 48.8
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 1.2e-24 119.8 75 61.3
TAR622G0913 Trochodendron aralioides HOM05D007034 ORTHO05D008665 3.6e-24 118.2 254 34.3
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 5.3e-20 104.4 370 25.4
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 1.2e-19 103.2 70 60.0
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 1.1e-14 86.7 74 59.5
Atru.chr6.1955 Acer truncatum HOM05D007034 ORTHO05D008665 2.0e-14 85.9 130 38.5
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 5.7e-14 84.3 70 58.6
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.4e-12 79.7 69 59.4
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 4.1e-12 78.2 69 58.0
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 2.9e-10 72.0 64 54.7
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 6.5e-10 70.9 351 23.4
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 6.5e-10 70.9 236 25.8
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.9e-09 69.3 317 24.0
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 3.2e-09 68.6 187 29.4
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 4.2e-09 68.2 272 24.6
MBI11_g13135_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.6e-08 66.2 142 33.8
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 2.7e-08 65.5 317 23.0
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 3.6e-08 65.1 286 23.8
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 6.1e-08 64.3 193 25.4
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 1.4e-07 63.2 192 24.0
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 1.4e-07 63.2 266 27.4
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.4e-07 63.2 268 25.4
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 1.4e-07 63.2 191 26.7
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 1.8e-07 62.8 198 23.2
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 1.8e-07 62.8 188 24.5
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 3.0e-07 62.0 189 25.4
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 3.0e-07 62.0 271 26.6
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 5.2e-07 61.2 261 24.9
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 5.2e-07 61.2 189 24.3
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 6.7e-07 60.8 192 25.0
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 6.7e-07 60.8 231 24.7
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 6.7e-07 60.8 327 25.1
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 1.1e-06 60.1 291 26.1
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 1.1e-06 60.1 228 23.2
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 1.1e-06 60.1 302 25.8
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 1.1e-06 60.1 193 26.4
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 1.5e-06 59.7 257 25.7
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 1.5e-06 59.7 188 26.1
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 2.0e-06 59.3 189 24.9
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 2.0e-06 59.3 229 25.8
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 2.6e-06 58.9 193 25.9
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 2.6e-06 58.9 283 26.5
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 3.3e-06 58.5 194 25.3
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 3.3e-06 58.5 330 23.6
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 4.4e-06 58.2 189 25.9
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 4.4e-06 58.2 259 22.8
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 4.4e-06 58.2 271 25.1
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 5.7e-06 57.8 345 20.6
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 5.7e-06 57.8 237 24.1
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 5.7e-06 57.8 204 31.4
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 5.7e-06 57.8 194 23.2
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 5.7e-06 57.8 267 26.6
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 7.4e-06 57.4 213 23.5
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 7.4e-06 57.4 193 23.3
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 7.4e-06 57.4 261 24.9
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 7.4e-06 57.4 189 28.0
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 9.7e-06 57.0 193 22.8
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 9.7e-06 57.0 193 23.3
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 9.7e-06 57.0 193 23.3
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 9.7e-06 57.0 221 25.3


User provided reference genes

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