Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 0.0e+00 1156.0 607 100.0
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 0.0e+00 1097.0 610 91.8
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 0.0e+00 1085.5 627 89.2
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 0.0e+00 1082.8 628 89.0
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 0.0e+00 1078.9 632 88.3
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 9.1e-310 1066.2 608 88.2
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 2.7e-309 1064.7 610 88.0
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 1.6e-306 1055.4 613 88.7
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 2.8e-303 1044.6 609 89.7
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 1.4e-302 1042.3 609 89.3
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 5.6e-299 1030.4 599 88.1
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 4.7e-298 1027.3 607 88.0
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 4.6e-293 1010.7 626 84.7
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 3.1e-281 971.5 603 82.8
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 9.9e-264 913.3 611 76.1
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 7.3e-259 897.1 609 74.2
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 1.1e-257 893.3 596 75.5
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 1.4e-257 892.9 610 74.3
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 5.3e-257 891.0 606 74.6
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 5.3e-257 891.0 606 74.6
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 1.3e-255 886.3 586 76.1
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 5.4e-254 880.9 581 75.0
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 7.1e-254 880.6 581 75.0
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 1.6e-253 879.4 600 72.8
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 4.6e-253 877.9 592 74.8
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 1.3e-252 876.3 614 72.6
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 2.3e-252 875.5 622 73.0
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 3.0e-252 875.2 601 72.5
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 3.0e-252 875.2 592 74.8
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 5.1e-252 874.4 609 72.9
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 7.4e-251 870.5 601 72.4
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 4.8e-250 867.8 591 73.8
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 6.2e-250 867.5 603 75.8
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 1.4e-249 866.3 587 73.9
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 2.4e-249 865.5 603 75.8
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 3.1e-249 865.1 586 74.2
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 5.3e-249 864.4 601 72.0
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 6.9e-249 864.0 600 72.5
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 4.5e-248 861.3 599 71.8
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 9.9e-248 860.1 600 72.2
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 1.3e-247 859.8 607 71.0
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.3e-247 859.8 599 72.3
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 2.2e-247 859.0 513 80.7
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 2.9e-247 858.6 584 73.6
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 7.1e-246 854.0 513 81.3
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 9.3e-246 853.6 596 72.8
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 2.7e-245 852.0 604 71.0
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 6.0e-245 850.9 601 71.4
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 7.9e-245 850.5 605 71.4
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 1.0e-244 850.1 605 73.4
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 3.0e-244 848.6 605 71.2
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 3.3e-243 845.1 611 71.0
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 4.3e-243 844.7 609 70.4
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 4.3e-243 844.7 603 74.5
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 6.2e-242 840.9 591 72.3
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 8.2e-242 840.5 604 69.2
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 1.1e-241 840.1 600 71.2
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 1.4e-241 839.7 512 78.5
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 2.4e-241 839.0 593 72.5
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 3.1e-241 838.6 644 67.5
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 1.5e-240 836.3 601 69.9
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 2.6e-240 835.5 586 71.3
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 3.4e-240 835.1 593 71.3
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 1.0e-239 833.6 590 71.0
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 2.9e-239 832.0 514 78.2
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 6.5e-239 830.9 589 70.5
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 8.7e-236 820.5 594 70.5
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 1.9e-235 819.3 586 70.3
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 1.9e-235 819.3 509 78.8
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 1.1e-233 813.5 608 69.1
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 1.2e-232 810.1 608 68.9
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 2.0e-232 809.3 585 70.1
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 1.7e-231 806.2 583 71.5
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 8.5e-231 803.9 755 58.7
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 1.1e-230 803.5 589 69.8
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 5.5e-230 801.2 601 69.4
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 2.7e-229 798.9 589 69.3
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 3.0e-228 795.4 590 68.6
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 2.2e-223 779.2 633 64.9
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 2.3e-220 769.2 589 66.7
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 2.3e-220 769.2 688 60.6
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 5.1e-220 768.1 510 73.1
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 4.4e-219 765.0 507 74.4
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 2.7e-213 745.7 509 72.7
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 6.1e-213 744.6 601 64.9
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 1.1e-211 740.3 614 64.0
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 3.3e-203 712.2 494 72.1
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 9.1e-201 704.1 640 59.4
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 4.5e-200 701.8 514 67.5
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 7.7e-200 701.0 511 66.7
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 1.1e-198 697.2 731 53.8
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 1.9e-198 696.4 564 64.2
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.6e-197 693.3 517 66.5
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 6.3e-194 681.4 512 65.8
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 2.0e-192 676.4 496 67.9
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 2.8e-189 666.0 604 60.6
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 1.0e-188 664.1 458 74.7
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 2.4e-177 626.3 451 69.8
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 3.5e-176 622.5 445 69.0
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 6.0e-144 515.4 400 65.5
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 1.2e-131 474.6 292 76.7
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 2.9e-130 469.9 323 72.1
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 1.2e-128 464.5 287 80.5
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 7.4e-126 455.3 270 79.6
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 8.2e-125 451.8 309 72.2
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 5.3e-124 449.1 516 48.1
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 2.7e-104 383.6 385 56.4
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 2.0e-94 350.9 258 70.5
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 5.9e-91 339.3 188 86.7
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 3.0e-87 327.0 246 66.3
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 3.1e-84 317.0 188 76.6
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 7.2e-73 279.3 445 37.5
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 2.7e-59 234.2 222 57.7
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 7.3e-57 226.1 124 81.5
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 4.1e-52 210.3 307 41.7
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 4.6e-51 206.8 133 73.7
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 2.8e-48 197.6 108 80.6
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.1e-47 195.7 137 70.8
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 2.6e-38 164.5 183 53.6
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 1.7e-37 161.8 109 67.0
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 5.1e-26 123.6 134 53.7
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 7.3e-25 119.8 267 32.6
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 9.0e-23 112.8 186 43.5
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 1.2e-22 112.5 66 72.7
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 2.6e-14 84.7 164 36.6
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 1.2e-06 59.3 55 61.8


User provided reference genes

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