Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21020 Brassica carinata HOM05D000912 ORTHO05D001232 1.9e-173 612.5 315 100.0
BcaB04g21025 Brassica carinata HOM05D000912 ORTHO05D001232 8.8e-123 444.1 374 69.3
BraA01t04088Z Brassica rapa HOM05D000912 ORTHO05D001232 3.7e-121 438.7 366 69.1
BcaC09g48285 Brassica carinata HOM05D000912 ORTHO05D001232 2.7e-119 432.6 369 68.3
A01p40540 Brassica napus HOM05D000912 ORTHO05D001232 1.0e-118 430.6 369 67.2
BolC1t05157H Brassica oleracea HOM05D000912 ORTHO05D001232 3.8e-118 428.7 370 67.8
C01p52170 Brassica napus HOM05D000912 ORTHO05D001232 4.2e-117 425.2 370 67.6
Sp3g11140 Schrenkiella parvula HOM05D000912 ORTHO05D001232 4.4e-98 362.1 380 59.5
BcaB04g18744 Brassica carinata HOM05D000912 ORTHO05D001232 7.3e-93 344.7 370 58.6
Thhalv10019887m.g Eutrema salsugineum HOM05D000912 ORTHO05D001232 4.1e-88 328.9 412 53.4
AT3G12980 Arabidopsis thaliana HOM05D000912 ORTHO05D001232 2.7e-87 326.2 376 57.2
AL3G24680 Arabidopsis lyrata HOM05D000912 ORTHO05D001232 4.6e-87 325.5 386 55.4
C03p46030 Brassica napus HOM05D000912 ORTHO05D001232 4.3e-85 318.9 371 55.8
BolC3t16875H Brassica oleracea HOM05D000912 ORTHO05D001232 4.3e-85 318.9 371 55.8
BcaC01g04048 Brassica carinata HOM05D000912 ORTHO05D001232 1.2e-84 317.4 372 56.2
CARHR087520 Cardamine hirsuta HOM05D000912 ORTHO05D001232 2.0e-82 310.1 379 53.6
Carub.0003s1233 Capsella rubella HOM05D000912 ORTHO05D001232 2.7e-79 299.7 306 61.8
BraA03t12946Z Brassica rapa HOM05D000912 ORTHO05D001232 4.3e-77 292.4 356 54.5
A03p37920 Brassica napus HOM05D000912 ORTHO05D001232 5.6e-77 292.0 356 54.5
Aa31LG8G230 Aethionema arabicum HOM05D000912 ORTHO05D001232 1.3e-54 217.6 356 49.7
THA.LOC104810279 Tarenaya hassleriana HOM05D000912 ORTHO05D001232 2.4e-27 127.1 315 36.8
Thecc.06G049100 Theobroma cacao HOM05D000912 ORTHO05D001232 2.7e-23 113.6 231 39.4
Gohir.D06G189400 Gossypium hirsutum HOM05D000912 ORTHO05D001232 4.7e-23 112.8 276 36.6
Gorai.010G222100 Gossypium raimondii HOM05D000912 ORTHO05D001232 2.3e-22 110.5 276 36.2
Sabra14G0003100 Salix brachista HOM05D000912 ORTHO05D001232 6.7e-22 109.0 314 34.1
CANSAT01G3172 Cannabis sativa HOM05D000912 ORTHO05D001232 2.0e-21 107.5 293 33.1
Gohir.A06G182500 Gossypium hirsutum HOM05D000912 ORTHO05D001232 2.6e-21 107.1 276 35.9
Cpa.g.sc10.17 Carica papaya HOM05D000912 ORTHO05D001232 3.3e-21 106.7 282 35.8
Manes.14G000600 Manihot esculenta HOM05D000912 ORTHO05D001232 7.4e-21 105.5 340 32.1
Duzib192G0163 Durio zibethinus HOM05D000912 ORTHO05D001232 1.3e-20 104.8 222 37.8
CsaV3_3G000040 Cucumis sativus L. HOM05D000912 ORTHO05D001232 2.2e-20 104.0 329 31.3
Manes.14G000700 Manihot esculenta HOM05D000912 ORTHO05D001232 8.2e-20 102.1 296 33.8
Potri.014G000500 Populus trichocarpa HOM05D000912 ORTHO05D001232 1.8e-19 100.9 266 33.8
TWI12G0824 Tripterygium wilfordii HOM05D000912 ORTHO05D001232 4.1e-19 99.8 302 32.1
Prupe.7G030400 Prunus persica HOM05D000912 ORTHO05D001232 5.3e-19 99.4 272 35.3
QL05p085111 Quercus lobata HOM05D000912 ORTHO05D001232 5.3e-19 99.4 284 33.1
Sed0017344 Sechium edule HOM05D000912 ORTHO05D001232 7.0e-19 99.0 298 31.5
Prupe.3G028200 Prunus persica HOM05D000912 ORTHO05D001232 1.2e-18 98.2 269 33.1
TWI18G1361 Tripterygium wilfordii HOM05D000912 ORTHO05D001232 1.2e-18 98.2 316 31.3
MELO3C013698.2 Cucumis melo HOM05D000912 ORTHO05D001232 2.6e-18 97.1 299 31.8
TWI75G1589 Tripterygium wilfordii HOM05D000912 ORTHO05D001232 4.5e-18 96.3 317 32.5
COL.COLO4_26805 Corchorus olitorius HOM05D000912 ORTHO05D001232 1.0e-17 95.1 227 36.1
Nitab4.5_0010895g0020 Nicotiana tabacum HOM05D000912 ORTHO05D001232 1.3e-17 94.7 279 33.7
Duzib235G0834 Durio zibethinus HOM05D000912 ORTHO05D001232 2.9e-17 93.6 263 31.6
Oeu036757.1 Olea europaea HOM05D000912 ORTHO05D001232 2.9e-17 93.6 274 33.9
Haze_16248 Corylus avellana HOM05D000912 ORTHO05D001232 1.5e-16 91.3 291 33.7
vmacro12581 Vaccinium macrocarpon HOM05D000912 ORTHO05D001232 9.4e-16 88.6 265 32.8
FvH4_6g36320 Fragaria vesca HOM05D000912 ORTHO05D001232 1.2e-15 88.2 325 30.8
FAN09G3798 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.2e-15 88.2 227 34.8
Gohir.A10G000900 Gossypium hirsutum HOM05D000912 ORTHO05D001232 1.2e-15 88.2 270 31.9
MD09G1170000 Malus domestica HOM05D000912 ORTHO05D001232 2.1e-15 87.4 339 30.1
ClCG10G000030 Citrullus lanatus HOM05D000912 ORTHO05D001232 4.7e-15 86.3 246 32.1
FAN05G3420 Fragaria x ananassa HOM05D000912 ORTHO05D001232 4.7e-15 86.3 243 35.0
CiPaw.02G050600 Carya illinoinensis HOM05D000912 ORTHO05D001232 6.1e-15 85.9 237 35.9
FAN14G0321 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.8e-14 84.3 319 31.3
FAN14G4043 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.8e-14 84.3 319 31.3
Gorai.011G001400 Gossypium raimondii HOM05D000912 ORTHO05D001232 2.3e-14 84.0 271 32.5
Gohir.D10G001100 Gossypium hirsutum HOM05D000912 ORTHO05D001232 3.0e-14 83.6 270 32.2
Ciclev10027674m.g Citrus clementina HOM05D000912 ORTHO05D001232 5.2e-14 82.8 223 34.1
Rhsim03G0000100 Rhododendron simsii HOM05D000912 ORTHO05D001232 1.5e-13 81.3 248 32.3
GSVIVG01029442001 Vitis vinifera HOM05D000912 ORTHO05D001232 3.3e-13 80.1 329 29.5
CiPaw.02G051600 Carya illinoinensis HOM05D000912 ORTHO05D001232 4.4e-13 79.7 282 33.3
Cfa014793 Carpinus fangiana HOM05D000912 ORTHO05D001232 5.7e-13 79.3 285 30.9
Gohir.A05G116900 Gossypium hirsutum HOM05D000912 ORTHO05D001232 5.7e-13 79.3 333 29.4
RcHm_v2.0_Chr2g0148331 Rosa chinensis HOM05D000912 ORTHO05D001232 7.5e-13 79.0 222 33.3
Lalb_Chr19g0140521 Lupinus albus HOM05D000912 ORTHO05D001232 9.7e-13 78.6 278 33.5
FAN02G2903 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.7e-12 77.8 343 28.9
VMungo1080G1388 Vigna mungo HOM05D000912 ORTHO05D001232 1.7e-12 77.8 292 32.5
PSO170G3675 Papaver somniferum HOM05D000912 ORTHO05D001232 4.8e-12 76.3 230 33.9
ATR1125G026 Amborella trichopoda HOM05D000912 ORTHO05D001232 8.2e-12 75.5 327 29.7
Migut.H01257 Erythranthe guttata HOM05D000912 ORTHO05D001232 1.1e-11 75.1 312 27.6
Lj7C414G2 Lonicera japonica HOM05D000912 ORTHO05D001232 1.1e-11 75.1 278 31.7
PSO017G2537 Papaver somniferum HOM05D000912 ORTHO05D001232 1.4e-11 74.7 227 32.2
Medtr4g005050 Medicago truncatula HOM05D000912 ORTHO05D001232 2.4e-11 73.9 290 29.3
Actinidia00648 Actinidia chinensis HOM05D000912 ORTHO05D001232 3.1e-11 73.6 312 29.8
ECA246G3011 Erigeron canadensis HOM05D000912 ORTHO05D001232 4.1e-11 73.2 251 27.5
ECA247G1226 Erigeron canadensis HOM05D000912 ORTHO05D001232 4.1e-11 73.2 211 32.2
Gohir.D06G118100 Gossypium hirsutum HOM05D000912 ORTHO05D001232 5.3e-11 72.8 232 32.8
AUR62025681 Chenopodium quinoa HOM05D000912 ORTHO05D001232 1.2e-10 71.6 204 32.8
Gohir.D05G117800 Gossypium hirsutum HOM05D000912 ORTHO05D001232 1.2e-10 71.6 275 30.2
Nn8g41285 Nelumbo nucifera HOM05D000912 ORTHO05D001232 1.2e-10 71.6 220 28.6
CAN.G880.12 Capsicum annuum HOM05D000912 ORTHO05D001232 2.0e-10 70.9 324 28.7
Gorai.009G121700 Gossypium raimondii HOM05D000912 ORTHO05D001232 3.5e-10 70.1 326 29.4
Solyc04g008610.3 Solanum lycopersicum HOM05D000912 ORTHO05D001232 3.5e-10 70.1 270 30.4
CARHR045720 Cardamine hirsuta HOM05D000912 ORTHO05D001232 7.7e-10 68.9 310 27.4
HanXRQChr05g0150621 Helianthus annuus HOM05D000912 ORTHO05D001232 7.7e-10 68.9 315 27.6
Nn2g12790 Nelumbo nucifera HOM05D000912 ORTHO05D001232 1.7e-09 67.8 299 28.8
AUR62001296 Chenopodium quinoa HOM05D000912 ORTHO05D001232 2.2e-09 67.4 204 32.4
MD17G1157100 Malus domestica HOM05D000912 ORTHO05D001232 2.2e-09 67.4 182 33.5
HanXRQChr09g0266961 Helianthus annuus HOM05D000912 ORTHO05D001232 2.9e-09 67.0 335 28.1
EL10Ac7g18098 Beta vulgaris HOM05D000912 ORTHO05D001232 5.0e-09 66.2 255 30.6
Peaxi162Scf00329g00813 Petunia axillaris HOM05D000912 ORTHO05D001232 1.9e-08 64.3 283 29.7
AT1G55970 Arabidopsis thaliana HOM05D000912 ORTHO05D001232 7.2e-08 62.4 272 32.0
Carub.0001s4458 Capsella rubella HOM05D000912 ORTHO05D001232 7.2e-08 62.4 223 32.7
Potri.007G003400 Populus trichocarpa HOM05D000912 ORTHO05D001232 1.2e-07 61.6 176 33.5
AL1G64230 Arabidopsis lyrata HOM05D000912 ORTHO05D001232 1.6e-07 61.2 192 34.9
THA.LOC104808111 Tarenaya hassleriana HOM05D000912 ORTHO05D001232 2.1e-07 60.8 300 28.0
Zm00001eb231830 Zea mays HOM05D000912 ORTHO05D001232 3.6e-07 60.1 267 27.7
Hund18548 Selenicereus undatus HOM05D000912 ORTHO05D001232 6.1e-07 59.3 296 26.4
SGA_v2.0_scaffold73G24406 Striga asiatica HOM05D000912 ORTHO05D001232 2.3e-06 57.4 229 30.6
MSTRG.6589 Avicennia marina HOM05D000912 ORTHO05D001232 4.0e-06 56.6 255 27.1
Lsat_1_v5_gn_4_131340 Lactuca sativa HOM05D000912 ORTHO05D001232 6.8e-06 55.8 301 27.2


User provided reference genes

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