Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 4.1e-248 860.9 428 100.0
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 6.8e-243 843.6 430 97.9
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 1.3e-241 839.3 428 97.4
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 4.9e-241 837.4 428 97.4
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 6.4e-241 837.0 428 97.2
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 8.3e-241 836.6 432 97.0
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 2.7e-239 831.6 432 96.3
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 3.5e-239 831.2 428 96.7
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 2.3e-238 828.6 436 95.4
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 1.1e-235 819.7 432 94.9
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 1.1e-235 819.7 431 95.1
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 5.2e-235 817.4 444 93.2
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 3.4e-234 814.7 428 94.4
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 2.8e-228 795.0 431 91.9
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 3.6e-228 794.7 431 91.9
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 8.9e-227 790.0 431 91.9
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 1.7e-225 785.8 431 91.2
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 6.4e-225 783.9 403 97.0
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 2.3e-214 748.8 495 78.0
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 5.4e-208 727.6 432 84.0
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 2.4e-195 685.6 397 84.1
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 6.9e-195 684.1 432 80.3
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 6.9e-195 684.1 427 80.6
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 9.0e-195 683.7 433 80.8
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 2.0e-194 682.6 409 83.4
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 7.6e-194 680.6 392 84.9
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 2.2e-193 679.1 432 78.9
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 4.9e-193 677.9 395 84.1
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 4.9e-193 677.9 404 82.9
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 1.1e-192 676.8 431 79.1
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 1.9e-192 676.0 431 78.4
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.9e-192 676.0 435 78.6
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 2.4e-192 675.6 431 78.9
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.2e-192 675.2 397 83.6
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 3.2e-192 675.2 397 83.6
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 4.2e-192 674.9 395 83.8
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 4.2e-192 674.9 431 79.6
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 4.2e-192 674.9 435 78.6
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 4.2e-192 674.9 432 78.2
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 5.5e-192 674.5 431 79.1
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 7.1e-192 674.1 433 78.3
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 9.3e-192 673.7 433 78.5
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 9.3e-192 673.7 432 78.9
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 9.3e-192 673.7 431 78.7
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 1.2e-191 673.3 398 83.4
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 1.2e-191 673.3 433 78.8
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 1.6e-191 672.9 411 80.5
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.7e-191 672.2 431 78.2
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 2.7e-191 672.2 407 82.1
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 2.7e-191 672.2 432 78.7
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 4.6e-191 671.4 397 82.6
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 4.6e-191 671.4 399 82.5
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 6.0e-191 671.0 431 77.7
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 6.0e-191 671.0 397 82.4
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.0e-190 670.2 397 82.1
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.0e-190 670.2 397 83.1
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 1.0e-190 670.2 431 78.4
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 2.3e-190 669.1 431 77.3
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 3.9e-190 668.3 403 82.1
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 5.1e-190 667.9 439 77.4
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 6.7e-190 667.5 432 77.3
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 8.7e-190 667.2 431 77.5
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 1.1e-189 666.8 433 77.6
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 1.5e-189 666.4 379 85.8
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.5e-189 666.4 397 82.1
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 1.5e-189 666.4 432 78.0
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.5e-189 665.6 430 77.2
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 2.5e-189 665.6 431 77.7
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 5.6e-189 664.5 431 77.5
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 5.6e-189 664.5 402 81.1
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 7.4e-189 664.1 432 77.8
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 7.4e-189 664.1 432 77.8
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 9.6e-189 663.7 425 77.9
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 9.6e-189 663.7 433 76.7
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 9.6e-189 663.7 437 77.1
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 9.6e-189 663.7 432 77.1
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 1.3e-188 663.3 431 77.5
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 2.1e-188 662.5 417 78.4
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 2.8e-188 662.1 431 77.5
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 4.8e-188 661.4 431 77.5
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 8.2e-188 660.6 407 80.3
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 8.2e-188 660.6 396 80.8
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 2.4e-187 659.1 434 76.7
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 2.4e-187 659.1 396 81.6
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 3.1e-187 658.7 396 81.1
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 3.1e-187 658.7 397 82.1
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 4.0e-187 658.3 423 78.3
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 5.3e-187 657.9 434 76.5
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 9.0e-187 657.1 397 81.1
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 1.2e-186 656.8 429 76.9
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 2.6e-186 655.6 411 79.3
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 3.4e-186 655.2 432 75.7
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 5.8e-186 654.4 419 77.6
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 1.3e-185 653.3 428 77.6
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 1.3e-185 653.3 415 78.3
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 2.2e-185 652.5 406 79.8
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 8.4e-185 650.6 368 86.4
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 1.9e-184 649.4 422 80.1
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 5.5e-184 647.9 396 79.8
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 2.7e-183 645.6 368 86.1
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 5.1e-182 641.3 405 78.3
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 6.7e-182 641.0 418 77.0
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 5.7e-181 637.9 431 75.9
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 3.1e-179 632.1 406 77.6
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 2.0e-178 629.4 365 84.1
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 2.6e-178 629.0 407 75.4
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 3.4e-178 628.6 437 71.4
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 5.0e-177 624.8 384 78.4
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 3.2e-176 622.1 396 79.3
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.6e-175 619.8 367 81.7
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.6e-175 619.8 396 79.3
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 6.1e-175 617.8 385 76.6
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 6.7e-174 614.4 375 80.0
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 6.1e-167 591.3 388 77.3
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 3.3e-165 585.5 439 71.1
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 2.8e-164 582.4 380 76.3
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 7.0e-163 577.8 387 70.5
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 2.2e-161 572.8 377 73.7
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 7.7e-154 547.7 366 71.3
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 1.8e-150 536.6 299 89.6
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 3.3e-149 532.3 356 73.3
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.2e-148 529.6 342 78.9
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 4.1e-147 525.4 377 66.3
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.9e-144 516.5 386 68.7
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 6.1e-135 485.0 288 81.6
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 3.9e-105 386.0 267 73.8
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 9.9e-101 371.3 280 68.2
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 7.4e-72 275.4 350 42.6
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 1.1e-70 271.6 331 42.9
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 1.3e-60 238.0 150 80.0
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 3.2e-51 206.8 118 84.7
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 1.0e-41 175.3 113 73.5
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 2.8e-39 167.2 84 96.4
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 5.3e-38 162.9 84 92.9
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 1.6e-29 134.8 84 75.0
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 6.8e-25 119.4 125 55.2
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 1.7e-23 114.8 57 89.5
BolC3t17202H Brassica oleracea HOM05D000003 ORTHO05D001498 1.6e-21 108.2 75 76.0
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 4.5e-21 106.7 93 64.5
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.7e-20 104.8 80 65.0
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 3.0e-17 94.0 195 33.3
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 1.8e-14 84.7 50 82.0
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 9.2e-14 82.4 65 70.8
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 4.7e-10 70.1 40 77.5


User provided reference genes

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