Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17722 Brassica carinata HOM05D001013 ORTHO05D015958 1.7e-88 329.3 169 100.0
BcaNung00646 Brassica carinata HOM05D001013 ORTHO05D004597 1.5e-39 166.8 119 78.2
Thhalv10024224m.g Eutrema salsugineum HOM05D001013 ORTHO05D004597 1.9e-39 166.4 119 78.2
AL7G16310 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 3.3e-39 165.6 119 77.3
BolC1t00384H Brassica oleracea HOM05D001013 ORTHO05D004597 3.3e-39 165.6 119 77.3
Carub.0007s0540 Capsella rubella HOM05D001013 ORTHO05D004597 7.2e-39 164.5 119 76.5
AT4G34890 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 9.5e-39 164.1 119 76.5
A01p03620 Brassica napus HOM05D001013 ORTHO05D004597 9.5e-39 164.1 119 76.5
BraA01t00348Z Brassica rapa HOM05D001013 ORTHO05D004597 9.5e-39 164.1 119 76.5
CARHR243170 Cardamine hirsuta HOM05D001013 ORTHO05D004597 9.5e-39 164.1 119 76.5
Sp7g32650 Schrenkiella parvula HOM05D001013 ORTHO05D004597 9.5e-39 164.1 119 76.5
C01p03910 Brassica napus HOM05D001013 ORTHO05D004597 2.1e-38 162.9 119 75.6
Aa31LG2G15640 Aethionema arabicum HOM05D001013 ORTHO05D004597 6.1e-38 161.4 119 75.6
Ciclev10014051m.g Citrus clementina HOM05D001013 ORTHO05D004597 1.4e-37 160.2 101 84.2
AT4G34900 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 2.3e-37 159.5 119 74.8
Atru.chr3.2746 Acer truncatum HOM05D001013 ORTHO05D004597 3.0e-37 159.1 101 83.2
BraA09t35819Z Brassica rapa HOM05D001013 ORTHO05D004597 6.8e-37 157.9 123 74.0
ClCG03G013290 Citrullus lanatus HOM05D001013 ORTHO05D004597 6.8e-37 157.9 101 82.2
MELO3C015199.2 Cucumis melo HOM05D001013 ORTHO05D004597 6.8e-37 157.9 101 82.2
CsaV3_1G042760 Cucumis sativus L. HOM05D001013 ORTHO05D004597 6.8e-37 157.9 101 82.2
RcHm_v2.0_Chr5g0051661 Rosa chinensis HOM05D001013 ORTHO05D004597 6.8e-37 157.9 101 82.2
A09p01610 Brassica napus HOM05D001013 ORTHO05D004597 1.2e-36 157.1 123 73.2
arahy.Tifrunner.gnm1.ann1.EX6ZD6 Arachis hypogaea HOM05D001013 ORTHO05D004597 2.0e-36 156.4 119 71.4
BcaB01g02072 Brassica carinata HOM05D001013 ORTHO05D004597 2.0e-36 156.4 105 81.9
Dinv36267 Davidia involucrata HOM05D001013 ORTHO05D004597 2.0e-36 156.4 101 81.2
FvH4_3g29000 Fragaria vesca HOM05D001013 ORTHO05D004597 2.0e-36 156.4 101 81.2
FAN11G2909 Fragaria x ananassa HOM05D001013 ORTHO05D004597 2.0e-36 156.4 101 81.2
FAN21G2353 Fragaria x ananassa HOM05D001013 ORTHO05D004597 2.0e-36 156.4 101 81.2
Cpa.g.sc84.69 Carica papaya HOM05D001013 ORTHO05D004597 2.6e-36 156.0 101 81.2
Psat5g286360 Pisum sativum HOM05D001013 ORTHO05D004597 2.6e-36 156.0 101 79.2
Hund22038 Selenicereus undatus HOM05D001013 ORTHO05D004597 2.6e-36 156.0 101 81.2
Ca_01292_v3 Cicer arietinum L. HOM05D001013 ORTHO05D004597 5.7e-36 154.8 101 78.2
Lj3g0023347 Lotus japonicus HOM05D001013 ORTHO05D004597 5.7e-36 154.8 101 79.2
Potri.009G054600 Populus trichocarpa HOM05D001013 ORTHO05D004597 5.7e-36 154.8 101 81.2
Rhsim13G0222300 Rhododendron simsii HOM05D001013 ORTHO05D004597 5.7e-36 154.8 119 71.4
Sed0014521 Sechium edule HOM05D001013 ORTHO05D004597 5.7e-36 154.8 104 79.8
THA.LOC104817905 Tarenaya hassleriana HOM05D001013 ORTHO05D004597 5.7e-36 154.8 101 80.2
TPR.G6821 Trifolium pratense HOM05D001013 ORTHO05D004597 5.7e-36 154.8 119 68.9
Actinidia16323 Actinidia chinensis HOM05D001013 ORTHO05D004597 7.5e-36 154.5 119 71.4
Glyma.13G340300 Glycine max HOM05D001013 ORTHO05D004597 7.5e-36 154.5 101 79.2
TWI34G0448 Tripterygium wilfordii HOM05D001013 ORTHO05D004597 9.8e-36 154.1 101 78.2
Glyma.15G034000 Glycine max HOM05D001013 ORTHO05D004597 1.3e-35 153.7 101 79.2
Prupe.4G245700 Prunus persica HOM05D001013 ORTHO05D004597 1.3e-35 153.7 101 80.2
AUR62000107 Chenopodium quinoa HOM05D001013 ORTHO05D004597 1.7e-35 153.3 101 80.2
BcaC04g24043 Brassica carinata HOM05D001013 ORTHO05D004597 2.2e-35 152.9 105 81.0
C09p01710 Brassica napus HOM05D001013 ORTHO05D004597 2.2e-35 152.9 123 72.4
BolC9t53105H Brassica oleracea HOM05D001013 ORTHO05D004597 2.2e-35 152.9 123 72.4
MD11G1161000 Malus domestica HOM05D001013 ORTHO05D004597 2.2e-35 152.9 103 77.7
GSVIVG01025282001 Vitis vinifera HOM05D001013 ORTHO05D004597 2.2e-35 152.9 101 79.2
CSS0021836 Camellia sinensis var. sinensis HOM05D001013 ORTHO05D004597 2.8e-35 152.5 101 81.2
Medtr2g098030 Medicago truncatula HOM05D001013 ORTHO05D004597 2.8e-35 152.5 101 79.2
AL6G50970 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 3.7e-35 152.1 119 73.1
CANSAT01G2178 Cannabis sativa HOM05D001013 ORTHO05D004597 3.7e-35 152.1 101 79.2
MD11G1197900 Malus domestica HOM05D001013 ORTHO05D004597 6.3e-35 151.4 101 79.2
Gohir.D09G111500 Gossypium hirsutum HOM05D001013 ORTHO05D004597 8.3e-35 151.0 101 79.2
Gorai.006G129200 Gossypium raimondii HOM05D001013 ORTHO05D004597 8.3e-35 151.0 101 79.2
Nitab4.5_0001800g0150 Nicotiana tabacum HOM05D001013 ORTHO05D004597 8.3e-35 151.0 101 78.2
CARHR250380 Cardamine hirsuta HOM05D001013 ORTHO05D004597 1.1e-34 150.6 119 72.3
Lalb_Chr24g0397071 Lupinus albus HOM05D001013 ORTHO05D004597 1.1e-34 150.6 101 77.2
Cfa009756 Carpinus fangiana HOM05D001013 ORTHO05D004597 1.4e-34 150.2 101 77.2
Peaxi162Scf01427g00007 Petunia axillaris HOM05D001013 ORTHO05D004597 1.4e-34 150.2 101 78.2
COL.COLO4_24880 Corchorus olitorius HOM05D001013 ORTHO05D004597 1.8e-34 149.8 119 69.7
QL01p005011 Quercus lobata HOM05D001013 ORTHO05D004597 1.8e-34 149.8 101 77.2
vmacro04203 Vaccinium macrocarpon HOM05D001013 ORTHO05D004597 1.8e-34 149.8 101 78.2
CiPaw.14G119800 Carya illinoinensis HOM05D001013 ORTHO05D004597 2.4e-34 149.4 101 78.2
Eucgr.J00780 Eucalyptus grandis HOM05D001013 ORTHO05D004597 2.4e-34 149.4 101 78.2
Ah.06g194350 Amaranthus hybridus HOM05D001013 ORTHO05D004597 3.1e-34 149.1 101 78.2
EL10Ac4g10284 Beta vulgaris HOM05D001013 ORTHO05D004597 3.1e-34 149.1 101 75.2
Haze_23121 Corylus avellana HOM05D001013 ORTHO05D004597 3.1e-34 149.1 101 77.2
Eucgr.J00782 Eucalyptus grandis HOM05D001013 ORTHO05D004597 3.1e-34 149.1 101 78.2
Nitab4.5_0006994g0020 Nicotiana tabacum HOM05D001013 ORTHO05D004597 3.1e-34 149.1 101 77.2
Phvul.L009543 Phaseolus vulgaris HOM05D001013 ORTHO05D004597 3.1e-34 149.1 101 76.2
PGR119G0568 Punica granatum HOM05D001013 ORTHO05D004597 3.1e-34 149.1 101 75.2
VMungo1080G0609 Vigna mungo HOM05D001013 ORTHO05D004597 3.1e-34 149.1 101 76.2
EL10Ac4g10268 Beta vulgaris HOM05D001013 ORTHO05D004597 4.1e-34 148.7 101 76.2
Sc06g0004540 Simmondsia chinensis HOM05D001013 ORTHO05D004597 4.1e-34 148.7 101 78.2
unitig_90.g27489 Utricularia gibba HOM05D001013 ORTHO05D004597 4.1e-34 148.7 101 77.2
Aqoxy1G00274 Aquilegia oxysepala HOM05D001013 ORTHO05D004597 5.4e-34 148.3 100 79.0
AUR62019282 Chenopodium quinoa HOM05D001013 ORTHO05D004597 5.4e-34 148.3 101 78.2
TAR636G2042 Trochodendron aralioides HOM05D001013 ORTHO05D004597 5.4e-34 148.3 103 75.7
Gohir.A09G114800 Gossypium hirsutum HOM05D001013 ORTHO05D004597 9.2e-34 147.5 119 68.9
Solyc11g065920.2 Solanum lycopersicum HOM05D001013 ORTHO05D004597 9.2e-34 147.5 119 68.1
Sopen11g025660 Solanum pennellii HOM05D001013 ORTHO05D004597 9.2e-34 147.5 119 68.1
Zm00001eb021020 Zea mays HOM05D001013 ORTHO05D004597 9.2e-34 147.5 104 76.0
CAN.G327.12 Capsicum annuum HOM05D001013 ORTHO05D004597 1.2e-33 147.1 101 76.2
MD03G1177200 Malus domestica HOM05D001013 ORTHO05D004597 1.6e-33 146.7 101 77.2
Thecc.09G231300 Theobroma cacao HOM05D001013 ORTHO05D004597 1.6e-33 146.7 101 78.2
MSTRG.18423 Avicennia marina HOM05D001013 ORTHO05D004597 2.7e-33 146.0 101 77.2
PSO384G0041 Papaver somniferum HOM05D001013 ORTHO05D004597 2.7e-33 146.0 119 65.5
PSO384G2146 Papaver somniferum HOM05D001013 ORTHO05D004597 2.7e-33 146.0 119 65.5
Nn2g15465 Nelumbo nucifera HOM05D001013 ORTHO05D004597 3.5e-33 145.6 101 74.3
Duzib170G0402 Durio zibethinus HOM05D001013 ORTHO05D004597 4.5e-33 145.2 101 77.2
Os03g0429800 Oryza sativa ssp. japonica HOM05D001013 ORTHO05D004597 4.5e-33 145.2 101 75.2
DCAR_002067 Daucus carota HOM05D001013 ORTHO05D004597 1.0e-32 144.1 101 74.3
TAR633G1179 Trochodendron aralioides HOM05D001013 ORTHO05D004597 1.0e-32 144.1 103 73.8
Cc07_g19600 Coffea canephora HOM05D001013 ORTHO05D004597 1.7e-32 143.3 101 73.3
Solyc11g065930.3 Solanum lycopersicum HOM05D001013 ORTHO05D004597 2.9e-32 142.5 101 72.3
Sopen11g025670 Solanum pennellii HOM05D001013 ORTHO05D004597 2.9e-32 142.5 101 72.3
ATR0605G208 Amborella trichopoda HOM05D001013 ORTHO05D004597 3.9e-32 142.1 101 75.2
Lsat_1_v5_gn_2_97481 Lactuca sativa HOM05D001013 ORTHO05D004597 5.0e-32 141.7 101 75.2
Lsat_1_v5_gn_2_97521 Lactuca sativa HOM05D001013 ORTHO05D004597 5.0e-32 141.7 101 75.2
FAN25G0972 Fragaria x ananassa HOM05D001013 ORTHO05D004597 8.6e-32 141.0 90 84.4
SGA_v2.0_scaffold247G44871 Striga asiatica HOM05D001013 ORTHO05D004597 8.6e-32 141.0 101 74.3
ECA238G2654 Erigeron canadensis HOM05D001013 ORTHO05D004597 1.1e-31 140.6 119 66.4
SEGI_22026 Sequoiadendron giganteum HOM05D001013 ORTHO05D015958 1.2e-30 137.1 100 73.0
HPP92_023576 Vanilla planifolia HOM05D001013 ORTHO05D004597 1.2e-30 137.1 114 65.8
Pp3c20_16340 Physcomitrium patens HOM05D001013 ORTHO05D004597 2.8e-30 136.0 101 70.3
AagrBONN_evm.TU.Sc2ySwM_228.138 Anthoceros agrestis HOM05D001013 ORTHO05D004597 2.3e-29 132.9 105 66.7
Mapoly0014s0136 Marchantia polymorpha HOM05D001013 ORTHO05D004597 8.9e-29 131.0 122 60.7
AT4G37500 Arabidopsis thaliana HOM05D001013 ORTHO05D015958 1.5e-28 130.2 111 66.7
SMO351G0580 Selaginella moellendorffii HOM05D001013 ORTHO05D004597 2.0e-28 129.8 101 70.3
CBR_g30957 Chara braunii HOM05D001013 ORTHO05D004597 2.6e-28 129.4 93 71.0
Cre12.g545101 Chlamydomonas reinhardtii HOM05D001013 ORTHO05D004597 3.4e-28 129.0 88 76.1
arahy.Tifrunner.gnm1.ann1.V5338L Arachis hypogaea HOM05D001013 ORTHO05D004597 4.1e-26 122.1 99 69.7
Psat0s3719g0200 Pisum sativum HOM05D015964 ORTHO05D015958 4.1e-26 122.1 96 66.7
Psat0s3719g0240 Pisum sativum HOM05D010975 ORTHO05D010903 4.1e-26 122.1 96 66.7
Sabra09G0039900 Salix brachista HOM05D001013 ORTHO05D004597 7.0e-26 121.3 171 48.0
A09p01640 Brassica napus HOM05D001013 ORTHO05D004597 3.0e-24 115.9 73 86.3
AUR62019283 Chenopodium quinoa HOM05D001013 ORTHO05D004597 4.3e-23 112.1 78 75.6
MCO15G310 Micromonas commoda HOM05D001013 ORTHO05D004597 2.1e-22 109.8 119 50.4
PRCOL_00001493 Prasinoderma coloniale HOM05D001013 ORTHO05D004597 2.6e-20 102.8 87 58.6
arahy.Tifrunner.gnm1.ann1.WY0JR2 Arachis hypogaea HOM05D005693 ORTHO05D015958 2.7e-17 92.8 63 76.2
AT3G04390 Arabidopsis thaliana HOM05D001013 ORTHO05D015958 3.5e-17 92.4 65 75.4
arahy.Tifrunner.gnm1.ann1.I21QA9 Arachis hypogaea HOM05D001013 ORTHO05D004597 7.8e-17 91.3 57 82.5
Cfa025145 Carpinus fangiana HOM05D001013 ORTHO05D004597 1.7e-16 90.1 87 54.0
Lj2A632G19 Lonicera japonica HOM05D001013 ORTHO05D004597 3.0e-16 89.4 60 78.3
CDE05G3370 Ceratophyllum demersum HOM05D001013 ORTHO05D004597 5.1e-16 88.6 69 72.5
MELO3C016640.2 Cucumis melo HOM05D001013 ORTHO05D004597 2.5e-15 86.3 58 81.0
arahy.Tifrunner.gnm1.ann1.TZEE0V Arachis hypogaea HOM05D001013 ORTHO05D015958 4.0e-13 79.0 60 73.3
A09p01670 Brassica napus HOM05D000125 ORTHO05D000120 1.5e-12 77.0 55 83.6
Manes.06G165500 Manihot esculenta HOM05D001013 ORTHO05D004597 1.3e-11 73.9 46 80.4
SHI29743 Sapria himalayana HOM05D001013 ORTHO05D004597 8.3e-11 71.2 46 76.1
arahy.Tifrunner.gnm1.ann1.W25XZR Arachis hypogaea HOM05D000005 ORTHO05D021489 1.4e-10 70.5 77 55.8
SHI29744 Sapria himalayana HOM05D001013 ORTHO05D004597 9.2e-10 67.8 44 79.5
ECA238G2169 Erigeron canadensis HOM05D001013 ORTHO05D004597 1.1e-07 60.8 46 67.4


User provided reference genes

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