Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 8.7e-246 853.2 434 100.0
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 2.2e-132 476.5 272 91.2
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 2.6e-125 453.0 284 83.8
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 2.6e-125 453.0 284 83.8
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 2.6e-125 453.0 284 83.8
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 2.6e-125 453.0 284 83.8
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 2.6e-125 453.0 284 83.8
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.3e-124 450.7 284 83.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 7.1e-123 444.9 284 82.0
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 7.1e-123 444.9 284 82.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 3.5e-122 442.6 284 82.0
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 4.6e-122 442.2 284 81.3
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.9e-122 441.4 284 81.3
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.0e-121 441.0 296 79.7
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 5.1e-121 438.7 296 79.4
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 5.1e-121 438.7 296 79.4
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 5.7e-120 435.3 284 79.2
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 7.6e-117 424.9 284 79.2
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 6.1e-114 415.2 284 75.4
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 7.9e-114 414.8 280 78.2
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.0e-113 414.5 284 75.0
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.3e-113 414.1 284 77.5
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.7e-108 397.1 284 72.2
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.2e-108 396.7 284 72.9
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 6.5e-108 395.2 284 72.5
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.4e-107 394.0 284 71.8
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.9e-107 393.7 284 72.2
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 4.2e-107 392.5 284 71.8
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.2e-106 391.0 286 70.6
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.6e-106 390.6 284 71.1
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 2.7e-106 389.8 284 70.4
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 4.6e-106 389.0 284 70.4
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 2.3e-105 386.7 284 69.7
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.3e-104 382.9 284 69.7
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 7.4e-104 381.7 286 69.9
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 7.4e-104 381.7 284 70.1
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 7.4e-104 381.7 284 68.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 9.7e-104 381.3 284 68.7
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.7e-103 380.6 284 68.7
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.2e-103 380.2 284 69.0
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.2e-103 380.2 284 68.3
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 2.8e-103 379.8 283 69.6
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 2.8e-103 379.8 284 68.7
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 6.3e-103 378.6 284 69.7
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 1.8e-102 377.1 284 69.7
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 1.8e-102 377.1 284 69.7
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.8e-102 377.1 284 68.0
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 5.3e-102 375.6 283 68.2
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 6.9e-102 375.2 284 68.3
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.2e-101 374.4 284 67.3
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 2.6e-101 373.2 284 68.3
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 3.4e-101 372.9 284 68.0
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 5.9e-101 372.1 284 68.3
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 7.7e-101 371.7 284 68.7
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.0e-100 371.3 284 68.7
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.3e-100 370.9 284 68.0
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 2.2e-100 370.2 284 68.7
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 3.8e-100 369.4 284 68.0
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.8e-100 369.4 284 68.0
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 5.0e-100 369.0 284 66.9
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 6.5e-100 368.6 284 67.6
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.9e-99 367.1 284 66.9
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.9e-99 367.1 284 68.7
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.9e-99 367.1 284 67.6
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.2e-99 366.3 284 67.3
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 4.2e-99 365.9 284 67.3
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 7.2e-99 365.2 284 67.3
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 9.4e-99 364.8 284 66.9
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 9.4e-99 364.8 284 68.7
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 9.4e-99 364.8 283 67.1
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.2e-98 364.4 284 67.3
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.2e-98 364.4 283 67.5
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.6e-98 364.0 284 66.5
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.6e-98 364.0 284 66.9
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.7e-98 363.2 284 66.9
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.6e-98 362.8 283 66.1
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.0e-97 361.3 290 66.6
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.8e-97 360.5 284 65.8
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 2.3e-97 360.1 283 66.1
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.0e-97 359.8 283 65.7
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 3.9e-97 359.4 284 68.0
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 6.7e-97 358.6 284 65.8
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.1e-96 357.8 284 67.3
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.5e-96 357.5 315 61.3
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 2.0e-96 357.1 284 64.8
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 5.7e-96 355.5 280 65.7
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 4.8e-95 352.4 284 64.8
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.1e-94 351.3 265 68.7
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 2.6e-93 346.7 284 65.5
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 7.7e-93 345.1 267 68.2
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 7.7e-93 345.1 284 65.5
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.3e-92 344.4 284 63.0
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 2.9e-92 343.2 275 65.8
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.8e-89 334.0 284 59.2
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 4.1e-86 322.8 285 61.1
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 7.0e-86 322.0 285 61.1
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.6e-85 320.1 283 61.1
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 3.5e-85 319.7 248 68.1
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.0e-84 318.2 284 57.7
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.2e-84 317.0 270 61.9
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.6e-82 310.8 284 59.2
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 2.3e-81 307.0 284 57.0
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 4.0e-81 306.2 285 53.3
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 9.8e-80 301.6 273 56.4
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.3e-79 301.2 285 55.8
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 2.9e-76 290.0 284 56.0
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.2e-75 285.4 219 70.3
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.4e-75 285.0 284 58.8
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.2e-73 279.3 239 61.9
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.4e-70 271.2 284 53.9
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 3.8e-68 263.1 306 51.3
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 4.2e-67 259.6 207 66.7
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 9.8e-64 248.4 267 52.4
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.7e-63 247.7 267 53.2
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 4.1e-62 243.0 184 70.1
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 6.4e-55 219.2 268 44.8
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.9e-54 217.6 184 62.5
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 3.2e-54 216.9 206 60.7
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 6.8e-49 199.1 130 74.6
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.5e-45 186.8 185 58.4
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.0e-44 185.3 131 74.0
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 5.6e-43 179.5 145 64.8
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-42 177.9 118 72.9
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.6e-40 169.1 167 55.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 7.1e-38 162.5 102 77.5
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.6e-37 161.4 171 49.7
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 6.2e-34 149.4 107 70.1
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-33 148.7 104 71.2
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.8e-33 146.0 151 57.6
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 2.2e-31 141.0 285 33.7
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.2e-30 136.7 105 68.6
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 5.4e-30 136.3 83 78.3
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.6e-27 126.3 121 61.2
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 3.1e-25 120.6 231 32.0
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.0e-24 117.9 97 66.0
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.6e-24 117.5 107 54.2
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 3.9e-20 103.6 253 29.2
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 9.0e-17 92.4 59 76.3
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 7.9e-13 79.3 48 79.2
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 7.9e-13 79.3 48 79.2
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 5.1e-12 76.6 48 77.1
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.5e-11 75.1 169 33.7
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-07 62.0 59 57.6


User provided reference genes

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