Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 1.3e-108 396.4 194 100.0
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 9.3e-107 390.2 194 99.0
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 4.6e-106 387.9 194 98.5
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 4.6e-106 387.9 194 98.5
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 4.6e-106 387.9 194 98.5
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 4.6e-106 387.9 194 98.5
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 4.6e-106 387.9 194 97.9
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 1.0e-105 386.7 194 97.9
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.3e-105 386.3 194 97.4
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 8.7e-105 383.6 194 96.9
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 1.1e-104 383.3 194 96.9
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 4.3e-104 381.3 194 96.4
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 2.5e-99 365.5 194 90.7
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.0e-97 358.6 194 93.3
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 84.0
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.1e-91 340.1 177 92.7
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 81.4
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 84.0
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 5.5e-91 337.8 194 81.4
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 5.5e-91 337.8 194 83.0
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 7.2e-91 337.4 194 83.5
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 1.2e-90 336.7 194 81.4
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 2.1e-90 335.9 194 83.5
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 82.0
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 80.4
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 4.6e-90 334.7 194 82.0
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 83.0
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.0e-89 333.6 194 79.4
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 80.9
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 82.5
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 3.0e-89 332.0 194 81.4
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 80.9
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 79.9
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 79.9
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 79.9
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 79.9
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 80.9
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 80.4
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 80.4
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 79.4
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 80.9
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 80.4
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 80.4
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 3.3e-88 328.6 194 77.3
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 4.3e-88 328.2 194 79.4
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 78.9
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 78.9
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 7.4e-88 327.4 193 80.3
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 79.4
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 81.4
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 80.9
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 79.4
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 80.4
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 77.8
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 79.4
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 77.8
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 78.9
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 2.8e-87 325.5 194 79.4
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 2.8e-87 325.5 194 80.4
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 79.4
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 78.9
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 77.3
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 8.2e-87 323.9 194 77.3
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 8.2e-87 323.9 194 77.8
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 8.2e-87 323.9 195 79.5
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 1.4e-86 323.2 194 77.8
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.8e-86 322.8 214 73.8
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 3.1e-86 322.0 194 77.3
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 4.1e-86 321.6 214 73.8
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 6.9e-86 320.9 194 78.9
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 6.9e-86 320.9 194 78.4
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 7.7e-85 317.4 187 78.6
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 7.7e-85 317.4 194 77.8
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 7.7e-85 317.4 194 77.8
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 77.3
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 1.0e-84 317.0 200 75.0
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 75.3
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 2.2e-84 315.8 194 75.3
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 6.5e-84 314.3 194 77.3
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 6.5e-84 314.3 194 74.7
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 1.9e-83 312.8 194 76.8
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 5.5e-83 311.2 235 67.2
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 1.2e-82 310.1 214 71.5
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 1.6e-82 309.7 194 74.2
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 1.6e-82 309.7 191 76.4
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 4.7e-82 308.1 194 73.7
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.0e-81 307.0 210 71.0
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 3.0e-81 305.4 225 68.0
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 6.7e-81 304.3 188 75.5
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 1.5e-80 303.1 194 72.2
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 4.4e-80 301.6 187 74.3
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 5.7e-80 301.2 194 75.8
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 6.3e-79 297.7 194 70.6
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 8.2e-79 297.4 178 77.0
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 8.2e-79 297.4 194 68.6
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 3.1e-78 295.4 173 79.8
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 7.0e-78 294.3 210 70.0
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 1.2e-77 293.5 195 69.7
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 1.0e-76 290.4 194 71.1
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 1.5e-75 286.6 297 52.9
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 8.0e-74 280.8 161 83.2
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 2.3e-73 279.3 162 82.7
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 3.3e-72 275.4 274 54.7
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.4e-70 269.2 160 78.8
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 3.5e-69 265.4 172 71.5
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 2.1e-66 256.1 283 50.5
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 4.7e-58 228.4 114 98.2
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 9.2e-54 214.2 120 84.2
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 2.0e-53 213.0 178 55.6
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.5e-53 211.8 120 82.5
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 1.0e-52 210.7 120 82.5
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.9e-52 209.1 134 72.4
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 5.0e-52 208.4 130 76.2
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 4.7e-50 201.8 193 50.8
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 2.2e-47 193.0 123 74.0
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 8.3e-47 191.0 123 73.2
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 2.1e-42 176.4 114 75.4
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 4.7e-42 175.3 173 50.9
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 6.2e-42 174.9 122 68.0
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 4.4e-40 168.7 112 65.2
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.7e-39 166.8 99 81.8
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 9.2e-38 161.0 93 82.8
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 5.0e-36 155.2 198 40.9
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 2.8e-34 149.4 88 85.2
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 2.8e-34 149.4 88 85.2
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 3.1e-33 146.0 89 77.5
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 1.2e-32 144.1 73 93.2
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 1.2e-32 144.1 73 93.2
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 1.2e-32 144.1 73 93.2
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 3.7e-31 139.0 76 81.6
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 6.4e-31 138.3 73 84.9
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 2.1e-29 133.3 71 84.5
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 1.1e-25 120.9 64 84.4
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 3.9e-20 102.4 96 55.2
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 4.0e-17 92.4 59 74.6
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.6e-13 80.5 83 51.8
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.6e-13 80.5 83 51.8
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 4.6e-13 79.0 55 72.7
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.0e-12 77.8 60 66.7
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 2.8e-10 69.7 72 52.8
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.1e-09 67.8 91 40.7
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 2.0e-08 63.5 56 55.4


User provided reference genes

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