Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13579 Brassica carinata HOM05D004593 ORTHO05D003703 1.3e-94 349.7 177 100.0
C05p00590 Brassica napus HOM05D004593 ORTHO05D017396 1.8e-93 345.9 177 98.9
BolC5t28848H Brassica oleracea HOM05D004593 ORTHO05D017396 2.4e-93 345.5 177 98.9
AL1G11040 Arabidopsis lyrata HOM05D004593 ORTHO05D017396 2.1e-57 226.1 172 65.7
AT1G01410 Arabidopsis thaliana HOM05D004593 ORTHO05D017396 2.6e-55 219.2 173 63.6
Thhalv10005276m.g Eutrema salsugineum HOM05D004593 ORTHO05D017396 7.6e-39 164.5 168 54.8
Sp3g21380 Schrenkiella parvula HOM05D004593 ORTHO05D017396 6.4e-30 134.8 177 47.5
A10p00560 Brassica napus HOM05D047897 ORTHO05D017396 5.6e-26 121.7 75 84.0
BraA10t42335Z Brassica rapa HOM05D047897 ORTHO05D017396 5.6e-26 121.7 75 84.0
AL71U10060 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 1.3e-25 120.6 148 47.3
AL8G36700 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 1.3e-25 120.6 148 47.3
Thhalv10011949m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 3.7e-25 119.0 148 45.9
CARHR278440 Cardamine hirsuta HOM05D004593 ORTHO05D017396 6.2e-25 118.2 159 48.4
AL8G36790 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 1.4e-24 117.1 148 46.6
A03p11320 Brassica napus HOM05D004593 ORTHO05D003703 2.4e-24 116.3 148 45.3
BraA03t10445Z Brassica rapa HOM05D004593 ORTHO05D003703 2.4e-24 116.3 148 45.3
Thhalv10015510m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 3.1e-24 115.9 149 45.0
AT5G60110 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 4.0e-24 115.5 147 46.9
AT5G60180 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 9.0e-24 114.4 147 47.6
BolC3t13767H Brassica oleracea HOM05D004593 ORTHO05D003703 1.7e-22 110.2 148 43.2
Thhalv10015422m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 2.2e-22 109.8 153 42.5
Thhalv10016021m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 2.2e-22 109.8 153 42.5
Thhalv10015334m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 3.8e-22 109.0 153 43.1
AL8G41860 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 6.5e-22 108.2 152 44.1
C03p13050 Brassica napus HOM05D004593 ORTHO05D003703 1.1e-21 107.5 148 42.6
Thhalv10015341m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 1.4e-21 107.1 152 42.8
BolC3t13768H Brassica oleracea HOM05D004593 ORTHO05D003703 1.9e-21 106.7 147 42.9
CARHR036840 Cardamine hirsuta HOM05D004593 ORTHO05D003703 2.5e-21 106.3 147 43.5
BcaB01g06359 Brassica carinata HOM05D004593 ORTHO05D003703 4.2e-21 105.5 148 41.2
BraA10t43816Z Brassica rapa HOM05D004593 ORTHO05D003703 5.5e-21 105.1 151 41.7
A08p10760 Brassica napus HOM05D004593 ORTHO05D003703 7.1e-21 104.8 149 43.6
BraA08t33073Z Brassica rapa HOM05D004593 ORTHO05D003703 7.1e-21 104.8 149 43.6
Carub.0008s2091 Capsella rubella HOM05D004593 ORTHO05D003703 9.3e-21 104.4 148 43.2
BcaC04g19662 Brassica carinata HOM05D004593 ORTHO05D003703 1.2e-20 104.0 146 41.8
BcaC04g19751 Brassica carinata HOM05D004593 ORTHO05D003703 1.2e-20 104.0 147 44.2
C09p52000 Brassica napus HOM05D004593 ORTHO05D003703 1.2e-20 104.0 147 44.2
C09p52660 Brassica napus HOM05D004593 ORTHO05D003703 1.2e-20 104.0 146 41.8
BolC9t58062H Brassica oleracea HOM05D004593 ORTHO05D003703 1.2e-20 104.0 147 44.2
BolC9t58133H Brassica oleracea HOM05D004593 ORTHO05D003703 1.2e-20 104.0 146 41.8
BcaB05g22526 Brassica carinata HOM05D004593 ORTHO05D003703 1.6e-20 103.6 129 47.3
BolC9t58127H Brassica oleracea HOM05D004593 ORTHO05D003703 1.6e-20 103.6 148 41.2
A03p11590 Brassica napus HOM05D004593 ORTHO05D003703 2.1e-20 103.2 151 41.1
A10p17310 Brassica napus HOM05D004593 ORTHO05D003703 2.1e-20 103.2 151 41.1
CARHR273750 Cardamine hirsuta HOM05D004593 ORTHO05D003703 2.1e-20 103.2 147 43.5
A10p17250 Brassica napus HOM05D004593 ORTHO05D003703 2.7e-20 102.8 148 40.5
BraA10t43809Z Brassica rapa HOM05D004593 ORTHO05D003703 2.7e-20 102.8 148 40.5
Sp6g20950 Schrenkiella parvula HOM05D004593 ORTHO05D003703 2.7e-20 102.8 149 42.3
A02p07020 Brassica napus HOM05D004593 ORTHO05D003703 4.6e-20 102.1 130 47.7
BraA02t05782Z Brassica rapa HOM05D004593 ORTHO05D003703 4.6e-20 102.1 130 47.7
CARHR157270 Cardamine hirsuta HOM05D004593 ORTHO05D003703 4.6e-20 102.1 149 42.3
Sp6g21810 Schrenkiella parvula HOM05D004593 ORTHO05D003703 4.6e-20 102.1 146 42.5
BraA03t10472Z Brassica rapa HOM05D004593 ORTHO05D003703 7.9e-20 101.3 153 40.5
BcaB08g36242 Brassica carinata HOM05D004593 ORTHO05D003703 1.0e-19 100.9 162 40.1
BcaNung07341 Brassica carinata HOM05D004593 ORTHO05D003703 1.3e-19 100.5 148 40.5
C09p52610 Brassica napus HOM05D004593 ORTHO05D003703 1.3e-19 100.5 148 40.5
BcaB01g04563 Brassica carinata HOM05D004593 ORTHO05D003703 1.8e-19 100.1 151 39.7
BcaC03g13997 Brassica carinata HOM05D004593 ORTHO05D003703 1.8e-19 100.1 130 46.9
C02p12360 Brassica napus HOM05D004593 ORTHO05D003703 1.8e-19 100.1 130 46.9
C09p51570 Brassica napus HOM05D004593 ORTHO05D003703 1.8e-19 100.1 154 40.9
BolC2t07336H Brassica oleracea HOM05D004593 ORTHO05D003703 1.8e-19 100.1 130 46.9
BolC9t58016H Brassica oleracea HOM05D004593 ORTHO05D003703 1.8e-19 100.1 154 40.9
BraA10t43763Z Brassica rapa HOM05D004593 ORTHO05D003703 1.8e-19 100.1 141 44.7
BcaC04g19796 Brassica carinata HOM05D004593 ORTHO05D003703 2.3e-19 99.8 154 40.9
A10p16850 Brassica napus HOM05D004593 ORTHO05D003703 2.3e-19 99.8 141 44.0
Carub.0008s2528 Capsella rubella HOM05D004593 ORTHO05D003703 3.0e-19 99.4 152 42.8
AT1G21620 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 3.9e-19 99.0 167 40.7
BcaB08g36269 Brassica carinata HOM05D004593 ORTHO05D003703 3.9e-19 99.0 154 40.3
C09p51990 Brassica napus HOM05D004593 ORTHO05D003703 3.9e-19 99.0 148 42.6
BolC9t58061H Brassica oleracea HOM05D004593 ORTHO05D003703 3.9e-19 99.0 148 42.6
CARHR273860 Cardamine hirsuta HOM05D004593 ORTHO05D003703 3.9e-19 99.0 146 42.5
BcaB08g36222 Brassica carinata HOM05D004593 ORTHO05D003703 5.1e-19 98.6 146 43.2
A10p16490 Brassica napus HOM05D004593 ORTHO05D003703 5.1e-19 98.6 154 40.9
C03p13480 Brassica napus HOM05D004593 ORTHO05D003703 5.1e-19 98.6 152 38.8
BraA10t43732Z Brassica rapa HOM05D004593 ORTHO05D003703 5.1e-19 98.6 154 40.9
CARHR183820 Cardamine hirsuta HOM05D004593 ORTHO05D003703 8.7e-19 97.8 128 46.9
BraA10t43760Z Brassica rapa HOM05D004593 ORTHO05D003703 1.1e-18 97.4 148 42.6
Carub.0008s2083 Capsella rubella HOM05D004593 ORTHO05D003703 1.1e-18 97.4 128 45.3
Aa31LG2G18740 Aethionema arabicum HOM05D004593 ORTHO05D003703 1.5e-18 97.1 144 40.3
A10p16810 Brassica napus HOM05D004593 ORTHO05D003703 1.5e-18 97.1 148 41.9
AL8G35710 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 1.9e-18 96.7 149 43.0
BolC3t13805H Brassica oleracea HOM05D004593 ORTHO05D003703 1.9e-18 96.7 152 38.8
A10p16830 Brassica napus HOM05D004593 ORTHO05D003703 2.5e-18 96.3 147 43.5
BraA10t43761Z Brassica rapa HOM05D004593 ORTHO05D003703 3.3e-18 95.9 127 46.5
Sp1g28540 Schrenkiella parvula HOM05D004593 ORTHO05D003703 4.3e-18 95.5 151 41.7
C09p52250 Brassica napus HOM05D004593 ORTHO05D003703 5.7e-18 95.1 149 38.9
Aa31LG1G12760 Aethionema arabicum HOM05D004593 ORTHO05D003703 9.6e-18 94.4 129 45.0
BcaC04g19627 Brassica carinata HOM05D004593 ORTHO05D003703 9.6e-18 94.4 149 38.9
A10p17000 Brassica napus HOM05D004593 ORTHO05D003703 9.6e-18 94.4 130 43.1
BcaB08g36239 Brassica carinata HOM05D004593 ORTHO05D003703 1.3e-17 94.0 132 45.5
BraA10t43762Z Brassica rapa HOM05D004593 ORTHO05D003703 1.3e-17 94.0 127 44.9
A09p33820 Brassica napus HOM05D004593 ORTHO05D003703 2.1e-17 93.2 157 41.4
Carub.0008s1994 Capsella rubella HOM05D004593 ORTHO05D003703 3.7e-17 92.4 148 39.2
BraA03t10471Z Brassica rapa HOM05D004593 ORTHO05D003703 8.2e-17 91.3 151 39.1
CARHR285940 Cardamine hirsuta HOM05D004593 ORTHO05D003703 1.1e-16 90.9 140 39.3
Sp6g21760 Schrenkiella parvula HOM05D004593 ORTHO05D003703 1.1e-16 90.9 125 41.6
BcaB01g04566 Brassica carinata HOM05D004593 ORTHO05D003703 1.4e-16 90.5 151 39.1
BcaC01g06509 Brassica carinata HOM05D004593 ORTHO05D003703 4.1e-16 89.0 145 39.3
BcaC01g06510 Brassica carinata HOM05D004593 ORTHO05D003703 4.1e-16 89.0 145 39.3
Thhalv10014036m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 6.9e-16 88.2 149 36.9
A03p11580 Brassica napus HOM05D004593 ORTHO05D003703 9.0e-16 87.8 151 38.4
THA.LOC104818525 Tarenaya hassleriana HOM05D004593 ORTHO05D003703 9.0e-16 87.8 142 41.5
THA.LOC104818526 Tarenaya hassleriana HOM05D004593 ORTHO05D003703 9.0e-16 87.8 142 41.5
THA.LOC104818528 Tarenaya hassleriana HOM05D004593 ORTHO05D003703 9.0e-16 87.8 142 41.5
C09p52010 Brassica napus HOM05D004593 ORTHO05D003703 1.5e-15 87.0 127 43.3
BolC9t58063H Brassica oleracea HOM05D004593 ORTHO05D003703 1.5e-15 87.0 127 43.3
AT5G59280 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 2.0e-15 86.7 149 40.3
C03p13510 Brassica napus HOM05D004593 ORTHO05D003703 2.0e-15 86.7 145 38.6
BolC3t13806H Brassica oleracea HOM05D004593 ORTHO05D003703 2.0e-15 86.7 145 38.6
BcaC04g19750 Brassica carinata HOM05D004593 ORTHO05D003703 3.4e-15 85.9 127 42.5
BcaB08g36243 Brassica carinata HOM05D004593 ORTHO05D003703 4.5e-15 85.5 145 40.0
Aa31LG1G11610 Aethionema arabicum HOM05D004593 ORTHO05D003703 5.8e-15 85.1 131 42.7
BcaB08g36241 Brassica carinata HOM05D004593 ORTHO05D003703 5.8e-15 85.1 127 45.7
A02p41070 Brassica napus HOM05D004593 ORTHO05D003703 5.8e-15 85.1 127 42.5
A03p54980 Brassica napus HOM05D004593 ORTHO05D003703 5.8e-15 85.1 127 42.5
C03p13460 Brassica napus HOM05D004593 ORTHO05D003703 5.8e-15 85.1 147 38.1
BolC3t13804H Brassica oleracea HOM05D004593 ORTHO05D003703 1.0e-14 84.3 145 37.2
C03p13470 Brassica napus HOM05D004593 ORTHO05D003703 2.9e-14 82.8 145 37.2
C02p12180 Brassica napus HOM05D004593 ORTHO05D003703 3.8e-14 82.4 108 45.4
BcaB08g36237 Brassica carinata HOM05D004593 ORTHO05D003703 6.5e-14 81.6 122 39.3
A10p16860 Brassica napus HOM05D004593 ORTHO05D003703 1.1e-13 80.9 122 42.6
C03p13530 Brassica napus HOM05D004593 ORTHO05D003703 1.4e-13 80.5 136 36.8
BolC3t13803H Brassica oleracea HOM05D004593 ORTHO05D003703 1.4e-13 80.5 147 36.1
BraA10t43765Z Brassica rapa HOM05D004593 ORTHO05D003703 1.4e-13 80.5 122 42.6
BolC3t13808H Brassica oleracea HOM05D004593 ORTHO05D003703 5.5e-13 78.6 120 38.3
BraA03t10473Z Brassica rapa HOM05D004593 ORTHO05D003703 7.2e-13 78.2 120 39.2
BcaB05g22575 Brassica carinata HOM05D004593 ORTHO05D003703 9.3e-13 77.8 110 41.8
A03p11600 Brassica napus HOM05D004593 ORTHO05D003703 1.6e-12 77.0 120 39.2
AT5G64490 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 2.7e-12 76.3 76 50.0
CARHR118680 Cardamine hirsuta HOM05D004593 ORTHO05D003703 4.6e-12 75.5 97 46.4
THA.LOC104818524 Tarenaya hassleriana HOM05D004593 ORTHO05D003703 1.3e-11 73.9 145 33.8
Duzib268G1610 Durio zibethinus HOM05D000867 ORTHO05D003703 1.1e-10 70.9 151 35.8
Manes.14G015800 Manihot esculenta HOM05D000867 ORTHO05D003703 3.3e-10 69.3 144 32.6
AT1G35850 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 4.3e-10 68.9 130 36.9
Sp6g21310 Schrenkiella parvula HOM05D004593 ORTHO05D003703 4.3e-10 68.9 116 40.5
Potri.001G457700 Populus trichocarpa HOM05D000867 ORTHO05D003703 7.4e-10 68.2 145 33.8
THA.LOC104818529 Tarenaya hassleriana HOM05D004593 ORTHO05D003703 1.3e-09 67.4 146 32.9
BcaB07g32918 Brassica carinata HOM05D004593 ORTHO05D003703 1.6e-09 67.0 85 43.5
COL.COLO4_20162 Corchorus olitorius HOM05D000867 ORTHO05D003703 1.6e-09 67.0 129 35.7
THA.LOC104811270 Tarenaya hassleriana HOM05D004593 ORTHO05D003703 1.6e-09 67.0 133 35.3
BcaB08g36236 Brassica carinata HOM05D004593 ORTHO05D003703 2.2e-09 66.6 129 38.8
Haze_06967 Corylus avellana HOM05D000867 ORTHO05D003703 2.2e-09 66.6 144 34.0
TWI74G1103 Tripterygium wilfordii HOM05D000867 ORTHO05D003703 2.2e-09 66.6 154 33.1
Cfa000077 Carpinus fangiana HOM05D000867 ORTHO05D003703 3.7e-09 65.9 144 34.0
Atru.chr1.2353 Acer truncatum HOM05D000867 ORTHO05D003703 4.8e-09 65.5 126 34.1
CAN.G696.16 Capsicum annuum HOM05D000867 ORTHO05D018887 6.3e-09 65.1 116 35.3
Potri.011G144000 Populus trichocarpa HOM05D000867 ORTHO05D003703 6.3e-09 65.1 145 32.4
Ah.14g087510 Amaranthus hybridus HOM05D000867 ORTHO05D003703 8.2e-09 64.7 128 34.4
Ciclev10023507m.g Citrus clementina HOM05D000867 ORTHO05D003703 8.2e-09 64.7 142 34.5
Duzib151G0751 Durio zibethinus HOM05D000867 ORTHO05D003703 8.2e-09 64.7 151 34.4
PSO210G5928 Papaver somniferum HOM05D000867 ORTHO05D003703 1.1e-08 64.3 149 34.9
TWI38G2223 Tripterygium wilfordii HOM05D000867 ORTHO05D003703 1.4e-08 63.9 146 32.9
CSS0022566 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D000906 2.4e-08 63.2 94 42.6
QL05p069029 Quercus lobata HOM05D000867 ORTHO05D003703 2.4e-08 63.2 158 31.0
Dinv32070 Davidia involucrata HOM05D000867 ORTHO05D003703 3.1e-08 62.8 126 31.7
CSS0033997 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D000906 4.1e-08 62.4 94 42.6
Gohir.D07G134350 Gossypium hirsutum HOM05D000867 ORTHO05D003703 4.1e-08 62.4 146 33.6
Thecc.04G201100 Theobroma cacao HOM05D000867 ORTHO05D003703 5.3e-08 62.0 147 32.7
COL.COLO4_33640 Corchorus olitorius HOM05D000867 ORTHO05D003703 6.9e-08 61.6 127 37.0
PSO210G5311 Papaver somniferum HOM05D000867 ORTHO05D003703 1.5e-07 60.5 149 32.2
COL.COLO4_37334 Corchorus olitorius HOM05D000867 ORTHO05D003703 2.0e-07 60.1 127 37.0
QL05p068663 Quercus lobata HOM05D000867 ORTHO05D003703 2.0e-07 60.1 158 30.4
Actinidia02302 Actinidia chinensis HOM05D000867 ORTHO05D003703 5.9e-07 58.5 145 30.3
COL.COLO4_09406 Corchorus olitorius HOM05D000867 ORTHO05D003703 5.9e-07 58.5 153 34.6
Aqoxy1G04004 Aquilegia oxysepala HOM05D000867 ORTHO05D000864 7.7e-07 58.2 158 29.1
Gohir.A07G130066 Gossypium hirsutum HOM05D000867 ORTHO05D003703 7.7e-07 58.2 146 32.2
Thhalv10015818m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 1.0e-06 57.8 154 31.8
Gorai.001G146000 Gossypium raimondii HOM05D000867 ORTHO05D003703 1.0e-06 57.8 146 32.2
Rhsim02G0096500 Rhododendron simsii HOM05D000867 ORTHO05D003703 1.0e-06 57.8 123 32.5
Actinidia39278 Actinidia chinensis HOM05D000867 ORTHO05D003703 1.3e-06 57.4 125 35.2
Ciclev10017866m.g Citrus clementina HOM05D000867 ORTHO05D003703 1.3e-06 57.4 125 33.6
BraA02t05768Z Brassica rapa HOM05D004593 ORTHO05D003703 2.9e-06 56.2 82 41.5
Sabra11G0128300 Salix brachista HOM05D000867 ORTHO05D003703 5.0e-06 55.5 145 29.7
PSO675G7317 Papaver somniferum HOM05D000867 ORTHO05D003703 6.5e-06 55.1 129 33.3


User provided reference genes

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