Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.7e-260 902.1 445 100.0
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 6.6e-233 810.4 465 88.4
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 8.1e-231 803.5 467 87.8
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 9.0e-230 800.0 467 87.4
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 2.5e-224 781.9 492 81.5
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 9.6e-224 780.0 491 81.7
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 2.8e-175 619.0 448 69.4
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.3e-156 557.0 447 67.1
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 1.1e-155 553.9 369 75.6
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 4.7e-154 548.5 433 67.2
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 1.6e-146 523.5 482 59.5
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 1.4e-145 520.4 375 68.3
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 6.4e-143 511.5 464 58.4
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 2.7e-141 506.1 380 67.6
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 3.5e-141 505.8 478 57.1
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 4.7e-138 495.4 380 66.6
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 1.2e-125 454.1 485 51.1
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 1.6e-125 453.8 448 52.2
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 3.9e-124 449.1 476 51.5
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 3.9e-124 449.1 476 51.3
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 5.1e-124 448.7 480 50.6
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 2.5e-123 446.4 474 49.4
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 3.6e-122 442.6 475 50.5
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.4e-121 440.7 502 48.6
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 3.8e-119 432.6 455 51.9
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 8.4e-119 431.4 481 49.3
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 3.2e-118 429.5 477 48.8
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 1.2e-117 427.6 467 51.0
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 4.6e-117 425.6 478 49.4
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 7.8e-117 424.9 485 48.9
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.0e-116 424.5 474 51.5
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 1.7e-116 423.7 472 50.0
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 4.3e-115 419.1 485 47.2
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 1.6e-114 417.2 451 51.0
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 4.8e-114 415.6 480 47.3
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 6.2e-114 415.2 434 49.5
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 3.4e-112 409.5 475 47.2
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 4.4e-112 409.1 533 43.9
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 3.8e-111 406.0 435 49.4
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 3.8e-111 406.0 440 51.6
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 1.1e-110 404.4 477 49.1
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 9.3e-110 401.4 435 48.5
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 1.2e-109 401.0 439 51.0
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.2e-109 401.0 491 48.1
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 2.1e-109 400.2 435 48.3
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 2.7e-109 399.8 488 45.9
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 4.6e-109 399.1 441 48.3
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 4.6e-109 399.1 435 50.8
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.0e-108 397.9 452 48.7
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 2.3e-108 396.7 487 47.0
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 3.0e-108 396.4 486 44.2
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 5.1e-108 395.6 437 49.9
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 6.6e-108 395.2 488 45.9
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 5.6e-107 392.1 539 41.9
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 2.1e-106 390.2 432 48.1
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 2.8e-106 389.8 488 45.9
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 6.2e-106 388.7 488 43.9
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 6.2e-106 388.7 456 45.8
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 1.8e-105 387.1 435 49.2
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 4.0e-105 386.0 435 48.3
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 2.6e-104 383.3 496 43.3
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 2.6e-104 383.3 484 44.6
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 5.8e-104 382.1 469 47.8
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 5.8e-104 382.1 466 48.3
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 7.6e-104 381.7 440 46.8
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 2.2e-103 380.2 405 49.6
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 3.8e-103 379.4 483 46.8
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 3.8e-103 379.4 387 51.2
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 4.9e-103 379.0 446 47.3
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 8.4e-103 378.3 489 42.9
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 1.9e-102 377.1 461 45.6
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.1e-102 375.2 484 45.0
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 1.6e-101 374.0 441 48.5
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 6.0e-101 372.1 487 44.1
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.8e-100 370.5 521 41.7
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 3.0e-100 369.8 361 54.6
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 3.0e-100 369.8 456 44.3
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 3.9e-100 369.4 553 40.7
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 1.5e-99 367.5 338 54.4
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 5.6e-99 365.5 539 40.3
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 7.4e-99 365.2 314 56.4
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 6.9e-97 358.6 455 47.0
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.0e-96 357.1 456 45.8
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 8.4e-95 351.7 586 37.7
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 1.4e-94 350.9 587 38.2
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 4.2e-94 349.4 590 37.3
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 9.3e-94 348.2 467 42.8
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 6.0e-93 345.5 488 43.0
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 7.9e-93 345.1 443 47.0
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 7.9e-93 345.1 605 36.5
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 9.6e-91 338.2 506 39.5
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.8e-90 336.7 268 60.1
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 3.7e-90 336.3 401 49.1
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 6.2e-90 335.5 450 43.3
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 6.2e-90 335.5 476 41.6
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 4.5e-88 329.3 242 62.0
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 7.6e-88 328.6 182 81.3
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.7e-87 327.4 486 41.4
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 6.5e-87 325.5 267 58.4
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.5e-86 323.6 243 63.8
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 4.2e-86 322.8 243 63.4
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 5.5e-86 322.4 485 41.2
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 1.3e-84 317.8 487 40.9
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 5.1e-84 315.8 423 44.4
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 3.7e-82 309.7 474 41.6
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 1.7e-79 300.8 248 58.9
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.7e-76 288.9 411 43.1
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 9.7e-75 285.0 243 55.6
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 1.7e-74 284.3 432 40.3
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 2.8e-74 283.5 270 54.1
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 4.8e-74 282.7 417 40.0
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.3e-74 282.3 411 43.1
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 1.5e-72 277.7 343 47.5
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 3.8e-71 273.1 377 43.2
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 3.6e-69 266.5 199 61.3
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 5.1e-68 262.7 314 46.2
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 3.7e-66 256.5 438 37.7
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 5.0e-63 246.1 336 43.5
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 6.5e-63 245.7 341 43.1
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 1.9e-62 244.2 314 43.6
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 2.5e-62 243.8 241 51.5
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 2.7e-61 240.4 475 34.3
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.4e-60 238.0 348 42.5
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 1.1e-57 228.4 271 46.5
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 1.8e-57 227.6 514 32.9
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 9.8e-51 205.3 285 44.6
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.2e-43 181.8 204 48.0
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.0e-43 181.0 132 63.6
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 2.4e-33 147.5 182 41.2
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 1.0e-31 142.1 120 54.2
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 3.1e-28 130.6 130 48.5
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 5.8e-27 126.3 159 45.3
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 1.3e-26 125.2 424 27.1
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.9e-22 111.3 186 41.4
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 2.3e-20 104.4 207 36.7
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 1.7e-18 98.2 103 49.5
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 2.2e-18 97.8 223 35.0
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 6.4e-18 96.3 214 36.0
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 1.3e-15 88.6 73 57.5
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 6.6e-15 86.3 64 56.2
BcaC02g09524 Brassica carinata HOM05D029228 ORTHO05D027443 1.9e-14 84.7 73 63.0
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 3.3e-14 84.0 110 36.4
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 4.3e-14 83.6 75 50.7
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 2.1e-13 81.3 63 52.4
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 8.9e-12 75.9 89 44.9
C04p23870 Brassica napus HOM05D029228 ORTHO05D027443 1.5e-11 75.1 73 60.3
C04p43720 Brassica napus HOM05D029228 ORTHO05D027443 1.3e-10 72.0 73 58.9
BolC4t25954H Brassica oleracea HOM05D029228 ORTHO05D027443 1.3e-10 72.0 73 58.9
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.3e-10 72.0 80 48.8
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.2e-10 71.2 178 34.8
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.9e-10 70.9 103 42.7
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 8.6e-07 59.3 105 32.4
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.3e-06 56.2 90 36.7


User provided reference genes

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