Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11877 Brassica carinata HOM05D004093 ORTHO05D091505 2.4e-59 231.9 109 100.0
A08p17440 Brassica napus HOM05D004093 ORTHO05D004981 3.5e-18 95.1 75 65.3
BcaB03g11876 Brassica carinata HOM05D004093 ORTHO05D004981 3.8e-17 91.7 72 65.3
BcaC01g00967 Brassica carinata HOM05D004093 ORTHO05D004981 5.0e-17 91.3 75 62.7
C03p86430 Brassica napus HOM05D004093 ORTHO05D004981 5.0e-17 91.3 75 62.7
BolC3t20936H Brassica oleracea HOM05D004093 ORTHO05D004981 5.0e-17 91.3 75 62.7
BraA01t00441Z Brassica rapa HOM05D004093 ORTHO05D004981 6.6e-17 90.9 72 65.3
BcaNung04674 Brassica carinata HOM05D004093 ORTHO05D004981 8.6e-17 90.5 72 63.9
A01p04580 Brassica napus HOM05D004093 ORTHO05D004981 1.9e-16 89.4 72 63.9
A08p17410 Brassica napus HOM05D004093 ORTHO05D004981 1.9e-16 89.4 72 63.9
C01p04970 Brassica napus HOM05D004093 ORTHO05D004981 1.9e-16 89.4 72 63.9
BcaC09g52186 Brassica carinata HOM05D004093 ORTHO05D004981 7.3e-16 87.4 72 61.1
BolC1t00478H Brassica oleracea HOM05D004093 ORTHO05D004981 7.3e-16 87.4 72 61.1
THA.LOC104807205 Tarenaya hassleriana HOM05D004093 ORTHO05D004981 7.3e-16 87.4 75 60.0
Sp7g31500 Schrenkiella parvula HOM05D004093 ORTHO05D004981 2.8e-15 85.5 71 62.0
Thhalv10024609m.g Eutrema salsugineum HOM05D004093 ORTHO05D004981 3.6e-15 85.1 71 60.6
AL7G17710 Arabidopsis lyrata HOM05D004093 ORTHO05D004981 8.0e-15 84.0 71 60.6
AT4G33760 Arabidopsis thaliana HOM05D004093 ORTHO05D004981 8.0e-15 84.0 71 60.6
CARHR241850 Cardamine hirsuta HOM05D004093 ORTHO05D004981 1.4e-14 83.2 71 60.6
Carub.0007s0667 Capsella rubella HOM05D004093 ORTHO05D004981 6.8e-14 80.9 71 57.7
Aa31sc178G40 Aethionema arabicum HOM05D004093 ORTHO05D004981 1.7e-12 76.3 75 54.7
Cpa.g.sc4140.1 Carica papaya HOM05D004093 ORTHO05D004981 1.4e-11 73.2 73 52.1
Thecc.02G031600 Theobroma cacao HOM05D004093 ORTHO05D004981 5.4e-11 71.2 75 50.7
Sed0024148 Sechium edule HOM05D004093 ORTHO05D004981 1.6e-10 69.7 75 49.3
Gohir.D01G172000 Gossypium hirsutum HOM05D004093 ORTHO05D004981 3.5e-10 68.6 75 48.0
ECA233G6085 Erigeron canadensis HOM05D004093 ORTHO05D004981 6.0e-10 67.8 75 49.3
Lsat_1_v5_gn_9_113901 Lactuca sativa HOM05D004093 ORTHO05D004981 6.0e-10 67.8 75 49.3
Aqoxy2G01432 Aquilegia oxysepala HOM05D004093 ORTHO05D004981 1.0e-09 67.0 75 46.7
Glyma.08G043900 Glycine max HOM05D004093 ORTHO05D004981 1.0e-09 67.0 73 46.6
Gorai.002G213600 Gossypium raimondii HOM05D004093 ORTHO05D004981 1.0e-09 67.0 75 46.7
Manes.07G052300 Manihot esculenta HOM05D004093 ORTHO05D004981 1.0e-09 67.0 75 49.3
ECA233G4634 Erigeron canadensis HOM05D004093 ORTHO05D004981 1.3e-09 66.6 75 49.3
Gohir.A01G180900 Gossypium hirsutum HOM05D004093 ORTHO05D004981 1.3e-09 66.6 75 46.7
HanXRQChr03g0069101 Helianthus annuus HOM05D004093 ORTHO05D004981 1.3e-09 66.6 75 49.3
HanXRQChr16g0510261 Helianthus annuus HOM05D004093 ORTHO05D004981 1.3e-09 66.6 75 49.3
VMungo0251G2341 Vigna mungo HOM05D004093 ORTHO05D004981 1.3e-09 66.6 73 47.9
Atru.chr5.2252 Acer truncatum HOM05D004093 ORTHO05D004981 1.7e-09 66.2 78 50.0
Glyma.05G236700 Glycine max HOM05D004093 ORTHO05D004981 3.0e-09 65.5 73 45.2
Lalb_Chr16g0387791 Lupinus albus HOM05D004093 ORTHO05D004981 3.0e-09 65.5 70 47.1
Phvul.002G318600 Phaseolus vulgaris HOM05D004093 ORTHO05D004981 3.0e-09 65.5 73 46.6
Phvul.011G054700 Phaseolus vulgaris HOM05D004093 ORTHO05D004981 3.0e-09 65.5 73 46.6
TWI14G0771 Tripterygium wilfordii HOM05D004093 ORTHO05D004981 3.0e-09 65.5 70 50.0
MD10G1112200 Malus domestica HOM05D004093 ORTHO05D004981 5.0e-09 64.7 75 46.7
Prupe.8G151800 Prunus persica HOM05D004093 ORTHO05D004981 5.0e-09 64.7 73 46.6
RcHm_v2.0_Chr6g0247831 Rosa chinensis HOM05D004093 ORTHO05D004981 5.0e-09 64.7 67 50.7
Sc20g0001830 Simmondsia chinensis HOM05D004093 ORTHO05D004981 8.6e-09 63.9 72 44.4
arahy.Tifrunner.gnm1.ann1.14EEYB Arachis hypogaea HOM05D004093 ORTHO05D004981 1.1e-08 63.5 70 45.7
arahy.Tifrunner.gnm1.ann1.K8EMZF Arachis hypogaea HOM05D004093 ORTHO05D004981 1.1e-08 63.5 70 45.7
COL.COLO4_17799 Corchorus olitorius HOM05D004093 ORTHO05D004981 1.1e-08 63.5 75 44.0
Glyma.16G091002 Glycine max HOM05D004093 ORTHO05D004981 1.1e-08 63.5 73 43.8
Nn6g32059 Nelumbo nucifera HOM05D004093 ORTHO05D004981 1.1e-08 63.5 78 44.9
CsaV3_4G000020 Cucumis sativus L. HOM05D004093 ORTHO05D004981 1.5e-08 63.2 75 45.3
Duzib052G0943 Durio zibethinus HOM05D004093 ORTHO05D004981 1.5e-08 63.2 75 45.3
MBI16_g34665_MAGBIO Magnolia biondii HOM05D004093 ORTHO05D004981 1.5e-08 63.2 75 46.7
Pp3c20_5000 Physcomitrium patens HOM05D004093 ORTHO05D004981 1.5e-08 63.2 77 44.2
TWI59G0012 Tripterygium wilfordii HOM05D004093 ORTHO05D004981 1.5e-08 63.2 70 48.6
GSVIVG01037036001 Vitis vinifera HOM05D004093 ORTHO05D004981 1.9e-08 62.8 75 46.7
Cfa004713 Carpinus fangiana HOM05D004093 ORTHO05D004981 2.5e-08 62.4 75 45.3
Ca_17297_v3 Cicer arietinum L. HOM05D004093 ORTHO05D004981 2.5e-08 62.4 73 45.2
Ca_17304_v3 Cicer arietinum L. HOM05D004093 ORTHO05D004981 2.5e-08 62.4 73 45.2
ClCG10G009970 Citrullus lanatus HOM05D004093 ORTHO05D004981 2.5e-08 62.4 71 46.5
Dinv09528 Davidia involucrata HOM05D004093 ORTHO05D004981 2.5e-08 62.4 75 46.7
TPR.G32673 Trifolium pratense HOM05D004093 ORTHO05D004981 2.5e-08 62.4 73 45.2
SMO364G0944 Selaginella moellendorffii HOM05D004093 ORTHO05D004981 3.3e-08 62.0 81 39.5
Ah.05g177500 Amaranthus hybridus HOM05D004093 ORTHO05D004981 4.3e-08 61.6 78 44.9
EL10Ac1g00697 Beta vulgaris HOM05D004093 ORTHO05D004981 4.3e-08 61.6 78 43.6
CiPaw.05G021800 Carya illinoinensis HOM05D004093 ORTHO05D004981 4.3e-08 61.6 75 44.0
Ciclev10028050m.g Citrus clementina HOM05D004093 ORTHO05D004981 4.3e-08 61.6 75 46.7
FvH4_2g03040 Fragaria vesca HOM05D004093 ORTHO05D004981 4.3e-08 61.6 67 49.3
Psat7g009880 Pisum sativum HOM05D004093 ORTHO05D004981 4.3e-08 61.6 73 45.2
Potri.001G289001 Populus trichocarpa HOM05D004093 ORTHO05D004981 4.3e-08 61.6 70 48.6
QL11p028820 Quercus lobata HOM05D004093 ORTHO05D004981 4.3e-08 61.6 75 46.7
TAR159G0001 Trochodendron aralioides HOM05D004093 ORTHO05D004981 4.3e-08 61.6 75 44.0
Rhsim11G0149600 Rhododendron simsii HOM05D004093 ORTHO05D004981 5.6e-08 61.2 75 45.3
SEGI_06015 Sequoiadendron giganteum HOM05D004093 ORTHO05D004981 7.3e-08 60.8 70 45.7
SEGI_18816 Sequoiadendron giganteum HOM05D004093 ORTHO05D004981 7.3e-08 60.8 70 45.7
SEGI_21269 Sequoiadendron giganteum HOM05D004093 ORTHO05D004981 7.3e-08 60.8 70 45.7
SEGI_31310 Sequoiadendron giganteum HOM05D004093 ORTHO05D004981 7.3e-08 60.8 70 45.7
CiPaw.06G163100 Carya illinoinensis HOM05D004093 ORTHO05D004981 9.5e-08 60.5 75 42.7
FAN15G0664 Fragaria x ananassa HOM05D004093 ORTHO05D004981 9.5e-08 60.5 67 47.8
Sabra16G0180800 Salix brachista HOM05D004093 ORTHO05D004981 9.5e-08 60.5 70 47.1
AUR62023346 Chenopodium quinoa HOM05D004093 ORTHO05D004981 1.2e-07 60.1 78 43.6
Lj4g0018571 Lotus japonicus HOM05D004093 ORTHO05D004981 1.2e-07 60.1 73 42.5
Lj5C222T15 Lonicera japonica HOM05D004093 ORTHO05D004981 1.6e-07 59.7 75 44.0
Medtr4g120810 Medicago truncatula HOM05D004093 ORTHO05D004981 1.6e-07 59.7 70 44.3
Medtr8g104740 Medicago truncatula HOM05D004093 ORTHO05D004981 1.6e-07 59.7 70 44.3
Nitab4.5_0010657g0010 Nicotiana tabacum HOM05D004093 ORTHO05D004981 2.1e-07 59.3 75 45.3
Dinv16064 Davidia involucrata HOM05D004093 ORTHO05D004981 2.8e-07 58.9 75 44.0
Hma1.2p1_1758F.1_g301170 Hydrangea macrophylla HOM05D004093 ORTHO05D004981 2.8e-07 58.9 78 42.3
Potri.009G084300 Populus trichocarpa HOM05D004093 ORTHO05D004981 2.8e-07 58.9 70 45.7
Sabra09G0065000 Salix brachista HOM05D004093 ORTHO05D004981 2.8e-07 58.9 70 45.7
Eucgr.I02505 Eucalyptus grandis HOM05D004093 ORTHO05D004981 3.6e-07 58.5 75 42.7
Peaxi162Scf00016g03248 Petunia axillaris HOM05D004093 ORTHO05D004981 3.6e-07 58.5 70 47.1
Cc02_g20210 Coffea canephora HOM05D004093 ORTHO05D004981 4.7e-07 58.2 70 48.6
PGR119G0904 Punica granatum HOM05D004093 ORTHO05D004981 4.7e-07 58.2 78 41.0
vmacro01935 Vaccinium macrocarpon HOM05D004093 ORTHO05D004981 4.7e-07 58.2 75 44.0
Medtr1g113700 Medicago truncatula HOM05D004093 ORTHO05D004981 6.2e-07 57.8 73 42.5
PSO447G0184 Papaver somniferum HOM05D004093 ORTHO05D004981 6.2e-07 57.8 78 41.0
ATR0767G039 Amborella trichopoda HOM05D004093 ORTHO05D004981 8.0e-07 57.4 70 45.7
AUR62013810 Chenopodium quinoa HOM05D004093 ORTHO05D004981 1.1e-06 57.0 88 40.9
MELO3C018029.2 Cucumis melo HOM05D004093 ORTHO05D004981 1.1e-06 57.0 63 49.2
PSO210G2081 Papaver somniferum HOM05D004093 ORTHO05D004981 1.1e-06 57.0 78 41.0
Oeu018200.1 Olea europaea HOM05D004093 ORTHO05D004981 1.8e-06 56.2 70 45.7
Actinidia04397 Actinidia chinensis HOM05D004093 ORTHO05D004981 2.3e-06 55.8 75 42.7
Nitab4.5_0000772g0040 Nicotiana tabacum HOM05D004093 ORTHO05D004981 2.3e-06 55.8 72 44.4
PGSC0003DMG402005133 Solanum tuberosum HOM05D004093 ORTHO05D004981 2.3e-06 55.8 70 45.7
CDE04G3016 Ceratophyllum demersum HOM05D004093 ORTHO05D004981 3.1e-06 55.5 70 42.9
DCAR_021934 Daucus carota HOM05D004093 ORTHO05D004981 4.0e-06 55.1 70 42.9
CANSAT25G3849 Cannabis sativa HOM05D004093 ORTHO05D004981 5.2e-06 54.7 68 42.6
MCO14G538 Micromonas commoda HOM05D004093 ORTHO05D004981 5.2e-06 54.7 66 42.4
CAN.G606.83 Capsicum annuum HOM05D004093 ORTHO05D004981 6.8e-06 54.3 91 39.6
vmacro20830 Vaccinium macrocarpon HOM05D004093 ORTHO05D004981 6.8e-06 54.3 73 42.5
Oeu037299.1 Olea europaea HOM05D004093 ORTHO05D004981 8.9e-06 53.9 64 48.4
Os01g0153400 Oryza sativa ssp. japonica HOM05D004093 ORTHO05D004981 8.9e-06 53.9 72 43.1
Solyc01g106740.4 Solanum lycopersicum HOM05D004093 ORTHO05D004981 8.9e-06 53.9 70 44.3
Sopen01g049060 Solanum pennellii HOM05D004093 ORTHO05D004981 8.9e-06 53.9 70 44.3


User provided reference genes

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