Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 8.1e-99 363.6 168 100.0
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 6.6e-93 344.0 167 94.6
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 1.5e-92 342.8 167 94.6
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 7.3e-92 340.5 168 94.0
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 7.3e-92 340.5 168 94.0
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 9.6e-92 340.1 167 93.4
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 4.8e-91 337.8 168 92.9
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 1.8e-90 335.9 168 92.9
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 3.1e-90 335.1 168 92.3
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 5.3e-90 334.3 167 91.6
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 3.4e-89 331.6 168 91.7
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 2.9e-88 328.6 167 89.8
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 1.4e-87 326.2 167 88.6
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 7.1e-87 323.9 172 88.4
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 7.1e-87 323.9 172 88.4
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 1.2e-86 323.2 167 88.6
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 1.2e-86 323.2 167 88.6
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 6.0e-86 320.9 167 86.8
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 6.0e-86 320.9 167 86.8
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 5.1e-85 317.8 167 85.0
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 2.8e-83 312.0 167 82.0
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.4e-82 308.9 167 82.0
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 5.3e-82 307.8 167 82.0
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 1.2e-81 306.6 167 82.6
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 2.0e-81 305.8 167 81.4
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 2.6e-81 305.4 167 82.0
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.9e-80 302.0 167 82.6
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 3.8e-80 301.6 167 80.2
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 4.9e-80 301.2 167 81.4
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 1.9e-79 299.3 167 80.8
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 1.6e-78 296.2 167 78.4
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 1.6e-78 296.2 167 78.4
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 2.1e-78 295.8 167 79.0
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 3.5e-78 295.0 167 77.8
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 4.6e-78 294.7 167 79.0
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 1.3e-77 293.1 167 79.0
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 1.3e-77 293.1 167 79.0
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 2.3e-77 292.4 167 79.6
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 2.3e-77 292.4 167 77.8
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 3.0e-77 292.0 167 79.0
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 3.0e-77 292.0 167 76.6
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 3.0e-77 292.0 167 76.6
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 3.0e-77 292.0 167 76.0
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 3.9e-77 291.6 167 76.6
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 3.9e-77 291.6 167 79.0
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 6.7e-77 290.8 168 79.2
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 8.7e-77 290.4 167 78.4
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 8.7e-77 290.4 167 77.2
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.1e-76 290.0 167 77.8
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 1.9e-76 289.3 167 77.2
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 2.5e-76 288.9 167 76.0
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 2.5e-76 288.9 167 76.0
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 2.5e-76 288.9 167 77.2
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 2.5e-76 288.9 167 77.2
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 5.6e-76 287.7 167 76.0
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 5.6e-76 287.7 167 75.4
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 7.4e-76 287.3 167 75.4
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 7.4e-76 287.3 167 75.4
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 9.6e-76 287.0 168 76.8
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 9.6e-76 287.0 167 77.2
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 1.3e-75 286.6 168 75.6
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 1.6e-75 286.2 167 76.6
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 2.8e-75 285.4 167 76.6
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 3.7e-75 285.0 167 75.4
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 3.7e-75 285.0 167 75.4
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 4.8e-75 284.6 167 76.0
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 6.2e-75 284.3 167 73.7
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 8.1e-75 283.9 167 73.7
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 1.1e-74 283.5 167 76.0
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.1e-74 283.5 167 73.7
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 1.4e-74 283.1 167 74.3
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 2.4e-74 282.3 167 72.5
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 4.0e-74 281.6 167 74.3
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 5.3e-74 281.2 167 74.3
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 5.3e-74 281.2 167 73.1
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 5.3e-74 281.2 167 73.7
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 5.3e-74 281.2 167 73.7
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 5.3e-74 281.2 167 72.5
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 6.9e-74 280.8 167 72.5
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 6.9e-74 280.8 167 72.5
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-73 279.3 160 79.4
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 2.0e-73 279.3 167 73.7
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 4.5e-73 278.1 167 72.5
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 5.8e-73 277.7 167 76.0
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 5.8e-73 277.7 167 71.3
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.7e-72 276.2 196 66.8
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-72 275.8 167 78.4
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.9e-72 275.4 167 79.0
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.5e-72 274.2 167 77.2
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 1.1e-71 273.5 167 71.9
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-71 272.7 167 76.0
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 2.5e-71 272.3 167 79.6
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.5e-71 272.3 167 76.6
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.5e-71 271.2 174 74.1
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 1.6e-70 269.6 167 69.5
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 4.6e-70 268.1 169 69.2
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 6.0e-70 267.7 167 71.9
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 3.9e-69 265.0 166 67.5
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 5.1e-69 264.6 166 68.7
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 1.1e-68 263.5 167 69.5
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 2.5e-68 262.3 166 69.3
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 3.3e-68 261.9 166 69.3
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 7.4e-68 260.8 167 69.5
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 2.8e-67 258.8 167 69.5
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 4.8e-67 258.1 202 60.9
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 2.4e-66 255.8 167 67.1
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 6.1e-62 241.1 167 61.1
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 1.0e-61 240.4 166 60.8
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 1.5e-60 236.5 166 62.0
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.8e-59 232.3 134 76.9
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.8e-59 232.3 134 76.9
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 8.2e-59 230.7 117 89.7
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 1.1e-58 230.3 144 70.1
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 1.2e-57 226.9 134 75.4
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 4.5e-57 224.9 157 63.7
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 4.2e-55 218.4 147 63.9
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 7.9e-54 214.2 128 76.6
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 2.0e-52 209.5 115 80.9
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.0e-52 209.5 115 80.9
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.7e-52 207.2 117 82.1
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.7e-52 207.2 117 82.1
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.7e-52 207.2 117 82.1
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-50 203.8 117 81.2
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 3.8e-48 195.3 197 47.2
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 4.7e-46 188.3 117 72.6
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-45 186.4 167 57.5
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-44 183.3 139 66.2
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 2.6e-44 182.6 181 50.8
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 4.4e-44 181.8 155 54.2
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.1e-42 175.3 96 80.2
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 3.2e-39 165.6 175 44.6
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 2.3e-37 159.5 90 80.0
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-36 156.0 87 81.6
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 3.1e-34 149.1 108 63.9
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 7.0e-34 147.9 86 72.1
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 2.2e-32 142.9 81 76.5
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 6.5e-32 141.4 81 77.8
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 2.6e-28 129.4 153 43.8
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.4e-28 128.6 81 74.1
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.9e-25 118.2 74 73.0
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.0e-22 107.8 64 76.6
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 6.8e-21 104.8 76 59.2
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.1e-06 56.6 35 62.9
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 4.7e-06 55.5 27 88.9


User provided reference genes

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