Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11084 Brassica carinata HOM05D000992 ORTHO05D001928 1.4e-62 242.7 117 100.0
BolC7t43735H Brassica oleracea HOM05D000992 ORTHO05D001928 1.6e-48 196.1 113 86.7
BcaC06g34176 Brassica carinata HOM05D000137 ORTHO05D001928 2.2e-47 192.2 113 85.8
C07p31890 Brassica napus HOM05D000992 ORTHO05D001928 2.2e-47 192.2 113 85.8
BraA06t27316Z Brassica rapa HOM05D000992 ORTHO05D001928 2.0e-43 179.1 113 82.3
A06p44420 Brassica napus HOM05D000992 ORTHO05D001928 9.8e-43 176.8 112 82.1
BcaB05g23416 Brassica carinata HOM05D000992 ORTHO05D001928 2.7e-40 168.7 90 90.0
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 3.5e-40 168.3 113 75.2
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 7.7e-40 167.2 113 74.3
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 2.9e-39 165.2 113 74.3
Sp2g12920 Schrenkiella parvula HOM05D000992 ORTHO05D001928 1.5e-38 162.9 112 74.1
BcaC06g31305 Brassica carinata HOM05D000992 ORTHO05D001928 1.2e-37 159.8 113 73.5
BcaC06g34175 Brassica carinata HOM05D000992 ORTHO05D001928 1.2e-37 159.8 113 73.5
CARHR257330 Cardamine hirsuta HOM05D000992 ORTHO05D001928 4.1e-33 144.8 109 67.9
Carub.0005s0043 Capsella rubella HOM05D000992 ORTHO05D001928 4.5e-32 141.4 114 63.2
Thhalv10000916m.g Eutrema salsugineum HOM05D000992 ORTHO05D001928 1.7e-31 139.4 112 62.5
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 2.5e-30 135.6 115 61.7
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 2.5e-30 135.6 115 61.7
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 9.5e-30 133.7 115 61.7
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 1.6e-24 116.3 112 54.5
AL5G10450 Arabidopsis lyrata HOM05D000992 ORTHO05D001928 4.6e-24 114.8 117 55.6
AT2G01470 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 1.0e-23 113.6 114 57.0
AT5G50550 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 1.0e-23 113.6 112 55.4
AT5G50650 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 1.0e-23 113.6 112 55.4
THA.LOC104805068 Tarenaya hassleriana HOM05D000992 ORTHO05D001928 1.9e-22 109.4 112 50.9
Thecc.02G282800 Theobroma cacao HOM05D000992 ORTHO05D001928 3.1e-20 102.1 119 42.9
AUR62023333 Chenopodium quinoa HOM05D000992 ORTHO05D001928 2.0e-19 99.4 114 40.4
Nitab4.5_0007845g0030 Nicotiana tabacum HOM05D000992 ORTHO05D001928 2.6e-19 99.0 114 41.2
PGR119G0308 Punica granatum HOM05D000992 ORTHO05D001928 4.4e-19 98.2 112 40.2
PGSC0003DMG400006156 Solanum tuberosum HOM05D000992 ORTHO05D001928 9.8e-19 97.1 114 40.4
Duzib248G0828 Durio zibethinus HOM05D000992 ORTHO05D001928 4.9e-18 94.7 121 41.3
Manes.17G077900 Manihot esculenta HOM05D000992 ORTHO05D001928 1.1e-17 93.6 118 43.2
Haze_10992 Corylus avellana HOM05D000992 ORTHO05D001928 1.4e-17 93.2 118 41.5
Sc10g0008370 Simmondsia chinensis HOM05D000992 ORTHO05D001928 1.9e-17 92.8 120 37.5
Cfa008618 Carpinus fangiana HOM05D000992 ORTHO05D001928 9.2e-17 90.5 120 38.3
Gorai.001G109900 Gossypium raimondii HOM05D000992 ORTHO05D001928 9.2e-17 90.5 121 40.5
Gohir.A07G097700 Gossypium hirsutum HOM05D000992 ORTHO05D001928 1.2e-16 90.1 121 39.7
Gohir.D07G102000 Gossypium hirsutum HOM05D000992 ORTHO05D001928 1.2e-16 90.1 121 39.7
Lalb_Chr16g0385011 Lupinus albus HOM05D000992 ORTHO05D001928 1.2e-16 90.1 126 38.1
TWI31G0575 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 1.2e-16 90.1 122 40.2
Duzib251G0427 Durio zibethinus HOM05D000992 ORTHO05D001928 1.6e-16 89.7 125 36.8
Actinidia04063 Actinidia chinensis HOM05D000992 ORTHO05D001928 2.1e-16 89.4 115 41.7
arahy.Tifrunner.gnm1.ann1.FYKT6P Arachis hypogaea HOM05D000992 ORTHO05D001928 2.1e-16 89.4 123 36.6
Dinv14423 Davidia involucrata HOM05D000992 ORTHO05D001928 2.1e-16 89.4 123 39.0
Nitab4.5_0000441g0190 Nicotiana tabacum HOM05D000992 ORTHO05D001928 2.1e-16 89.4 113 37.2
Dinv07657 Davidia involucrata HOM05D000269 ORTHO05D000216 2.7e-16 89.0 126 38.9
Potri.008G130300 Populus trichocarpa HOM05D000992 ORTHO05D001928 2.7e-16 89.0 115 41.7
EL10Ac1g00687 Beta vulgaris HOM05D000992 ORTHO05D001928 3.5e-16 88.6 112 38.4
Eucgr.G02182 Eucalyptus grandis HOM05D000992 ORTHO05D001928 4.6e-16 88.2 119 36.1
AUR62038000 Chenopodium quinoa HOM05D000992 ORTHO05D001928 1.0e-15 87.0 108 39.8
TWI75G1486 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 1.0e-15 87.0 121 38.0
vmacro00410 Vaccinium macrocarpon HOM05D000992 ORTHO05D001928 1.0e-15 87.0 123 42.3
Lalb_Chr05g0219541 Lupinus albus HOM05D000992 ORTHO05D001928 1.3e-15 86.7 127 36.2
MD13G1024400 Malus domestica HOM05D000992 ORTHO05D001928 1.7e-15 86.3 119 37.8
arahy.Tifrunner.gnm1.ann1.MZBU3F Arachis hypogaea HOM05D000992 ORTHO05D001928 3.0e-15 85.5 133 35.3
Actinidia18442 Actinidia chinensis HOM05D000992 ORTHO05D001928 3.9e-15 85.1 116 40.5
Sabra08G0098900 Salix brachista HOM05D000992 ORTHO05D001928 3.9e-15 85.1 119 37.8
CiPaw.06G011200 Carya illinoinensis HOM05D000992 ORTHO05D001928 5.1e-15 84.7 126 38.9
ClCG11G001240 Citrullus lanatus HOM05D000992 ORTHO05D001928 5.1e-15 84.7 126 34.9
Lsat_1_v5_gn_1_4261 Lactuca sativa HOM05D000992 ORTHO05D001928 5.1e-15 84.7 113 39.8
CANSAT64G2027 Cannabis sativa HOM05D000992 ORTHO05D001928 6.6e-15 84.3 114 37.7
Ah.05g177390 Amaranthus hybridus HOM05D000992 ORTHO05D001928 8.6e-15 84.0 109 42.2
HPP92_027233 Vanilla planifolia HOM05D000992 ORTHO05D001928 8.6e-15 84.0 126 33.3
Sopen07g024400 Solanum pennellii HOM05D000992 ORTHO05D001928 1.1e-14 83.6 114 36.0
CDE02G4261 Ceratophyllum demersum HOM05D000992 ORTHO05D001928 2.5e-14 82.4 108 35.2
HanXRQChr11g0320951 Helianthus annuus HOM05D000992 ORTHO05D001928 2.5e-14 82.4 112 38.4
COL.COLO4_13161 Corchorus olitorius HOM05D000992 ORTHO05D001928 3.3e-14 82.0 119 37.8
Lsat_1_v5_gn_9_43601 Lactuca sativa HOM05D000992 ORTHO05D001928 3.3e-14 82.0 112 38.4
HanXRQChr12g0377541 Helianthus annuus HOM05D000992 ORTHO05D001928 5.6e-14 81.3 116 37.1
QL11p050299 Quercus lobata HOM05D000992 ORTHO05D001928 5.6e-14 81.3 112 38.4
RcHm_v2.0_Chr4g0441451 Rosa chinensis HOM05D000992 ORTHO05D001928 5.6e-14 81.3 114 36.8
Ca_18738_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 7.3e-14 80.9 119 33.6
Ca_30875_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 7.3e-14 80.9 119 33.6
Solyc07g047970.4 Solanum lycopersicum HOM05D000992 ORTHO05D001928 7.3e-14 80.9 114 35.1
Nn4g24190 Nelumbo nucifera HOM05D000992 ORTHO05D001928 1.2e-13 80.1 120 37.5
Cc11_g08530 Coffea canephora HOM05D000992 ORTHO05D001928 1.6e-13 79.7 114 34.2
Lj5g0010526 Lotus japonicus HOM05D000992 ORTHO05D001928 1.6e-13 79.7 102 39.2
SGA_v2.0_scaffold39G15183 Striga asiatica HOM05D000992 ORTHO05D001928 1.6e-13 79.7 108 38.0
Migut.E00433 Erythranthe guttata HOM05D000992 ORTHO05D001928 2.1e-13 79.3 115 36.5
CsaV3_5G013310 Cucumis sativus L. HOM05D000992 ORTHO05D001928 2.8e-13 79.0 123 34.1
unitig_22.g5587 Utricularia gibba HOM05D000992 ORTHO05D001928 2.8e-13 79.0 112 34.8
ECA247G3162 Erigeron canadensis HOM05D000992 ORTHO05D001928 6.2e-13 77.8 120 35.0
Aqoxy7G00061 Aquilegia oxysepala HOM05D000992 ORTHO05D001928 8.1e-13 77.4 115 38.3
Glyma.07G218700 Glycine max HOM05D000992 ORTHO05D001928 8.1e-13 77.4 116 37.1
Hma1.2p1_1346F.1_g277200 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 8.1e-13 77.4 113 34.5
Hma1.2p1_1764F.1_g301400 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 8.1e-13 77.4 113 34.5
HanXRQChr02g0044681 Helianthus annuus HOM05D000992 ORTHO05D001928 1.8e-12 76.3 114 36.8
ECA232G2145 Erigeron canadensis HOM05D000992 ORTHO05D001928 2.3e-12 75.9 111 37.8
Phvul.002G095100 Phaseolus vulgaris HOM05D000992 ORTHO05D001928 2.3e-12 75.9 124 33.9
CSS0018449 Camellia sinensis var. sinensis HOM05D000992 ORTHO05D001928 3.1e-12 75.5 120 31.7
QL01p001467 Quercus lobata HOM05D000992 ORTHO05D001928 4.0e-12 75.1 118 36.4
Cpa.g.sc65.153 Carica papaya HOM05D000992 ORTHO05D001928 5.2e-12 74.7 114 37.7
SHI03261 Sapria himalayana HOM05D000992 ORTHO05D001928 5.2e-12 74.7 127 34.6
QL02p040832 Quercus lobata HOM05D000992 ORTHO05D001928 8.9e-12 73.9 120 35.8
TAR371G0875 Trochodendron aralioides HOM05D000992 ORTHO05D001928 8.9e-12 73.9 125 32.8
Rhsim06G0241000 Rhododendron simsii HOM05D000992 ORTHO05D001928 3.4e-11 72.0 120 31.7
SalBow1G5429 Salvia bowleyana HOM05D000992 ORTHO05D001928 5.8e-11 71.2 111 33.3
SalBow7G0291 Salvia bowleyana HOM05D000992 ORTHO05D001928 5.8e-11 71.2 109 35.8
TPR.G27486 Trifolium pratense HOM05D000992 ORTHO05D001928 5.8e-11 71.2 119 31.9
VMungo0251G1193 Vigna mungo HOM05D000992 ORTHO05D001928 5.8e-11 71.2 124 33.1
Medtr4g084650 Medicago truncatula HOM05D000992 ORTHO05D001928 7.5e-11 70.9 117 32.5
SalBow8G2514 Salvia bowleyana HOM05D000992 ORTHO05D001928 9.9e-11 70.5 112 32.1
MD16G1027100 Malus domestica HOM05D000992 ORTHO05D001928 1.7e-10 69.7 127 30.7
Manes.15G128400 Manihot esculenta HOM05D000992 ORTHO05D001928 1.7e-10 69.7 121 35.5
TAR629G1759 Trochodendron aralioides HOM05D000992 ORTHO05D001928 1.7e-10 69.7 110 33.6
Peaxi162Scf00776g00324 Petunia axillaris HOM05D000992 ORTHO05D001928 2.2e-10 69.3 114 32.5
Atru.chr11.373 Acer truncatum HOM05D000992 ORTHO05D001928 2.9e-10 68.9 123 32.5
PSO017G5972 Papaver somniferum HOM05D000992 ORTHO05D001928 4.9e-10 68.2 119 34.5
CSS0042156 Camellia sinensis var. sinensis HOM05D000992 ORTHO05D001928 6.4e-10 67.8 70 42.9
Oeu005277.1 Olea europaea HOM05D000992 ORTHO05D001928 1.1e-09 67.0 113 30.1
FAN12G1857 Fragaria x ananassa HOM05D000992 ORTHO05D001928 1.4e-09 66.6 112 33.9
FAN17G2843 Fragaria x ananassa HOM05D000992 ORTHO05D001928 1.4e-09 66.6 108 34.3
FAN07G2064 Fragaria x ananassa HOM05D000992 ORTHO05D001928 2.4e-09 65.9 108 34.3
FvH4_4g32580 Fragaria vesca HOM05D000992 ORTHO05D001928 3.2e-09 65.5 108 34.3
Actinidia04657 Actinidia chinensis HOM05D000992 ORTHO05D001928 5.4e-09 64.7 70 42.9
PSO478G1659 Papaver somniferum HOM05D000992 ORTHO05D001928 7.1e-09 64.3 125 33.6
Hund17156 Selenicereus undatus HOM05D000992 ORTHO05D001928 7.1e-09 64.3 148 31.1
Zm00001eb166990 Zea mays HOM05D000992 ORTHO05D001928 7.1e-09 64.3 113 33.6
DCAR_007301 Daucus carota HOM05D000992 ORTHO05D001928 2.1e-08 62.8 81 35.8
Potri.010G111800 Populus trichocarpa HOM05D000992 ORTHO05D001928 2.1e-08 62.8 123 28.5
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 2.7e-08 62.4 122 33.6
Pp3c22_1410 Physcomitrium patens HOM05D000992 ORTHO05D001928 3.5e-08 62.0 109 28.4
PSO782G4161 Papaver somniferum HOM05D000992 ORTHO05D001928 6.0e-08 61.2 126 31.7
PSO063G7085 Papaver somniferum HOM05D000992 ORTHO05D001928 1.0e-07 60.5 125 32.0
Sabra10G0082200 Salix brachista HOM05D000992 ORTHO05D001928 1.0e-07 60.5 123 28.5
MD08G1204700 Malus domestica HOM05D000992 ORTHO05D001928 1.3e-07 60.1 72 37.5
Peaxi162Scf00276g00615 Petunia axillaris HOM05D000992 ORTHO05D001928 1.3e-07 60.1 108 31.5
Ciclev10015444m.g Citrus clementina HOM05D000992 ORTHO05D001928 3.0e-07 58.9 126 29.4


User provided reference genes

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