Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10862 Brassica carinata HOM05D001722 ORTHO05D032038 5.5e-37 157.1 80 100.0
A06p00570 Brassica napus HOM05D001722 ORTHO05D001910 6.3e-17 90.5 49 89.8
A08p01250 Brassica napus HOM05D001722 ORTHO05D001910 6.3e-17 90.5 49 89.8
BraA06t23271Z Brassica rapa HOM05D001722 ORTHO05D001910 6.3e-17 90.5 49 89.8
BraA08t32176Z Brassica rapa HOM05D001722 ORTHO05D001910 6.3e-17 90.5 49 89.8
Thhalv10011526m.g Eutrema salsugineum HOM05D001722 ORTHO05D001910 6.3e-17 90.5 49 89.8
BcaC01g01431 Brassica carinata HOM05D001722 ORTHO05D001910 8.2e-17 90.1 49 89.8
C03p91950 Brassica napus HOM05D001722 ORTHO05D001910 8.2e-17 90.1 49 89.8
BcaC08g43588 Brassica carinata HOM05D001722 ORTHO05D001910 1.8e-16 89.0 49 87.8
C06p09870 Brassica napus HOM05D001722 ORTHO05D001910 1.8e-16 89.0 49 87.8
BolC3t21515H Brassica oleracea HOM05D001722 ORTHO05D001910 1.8e-16 89.0 49 87.8
BolC6t36058H Brassica oleracea HOM05D001722 ORTHO05D001910 1.8e-16 89.0 49 87.8
Sp1g40520 Schrenkiella parvula HOM05D001722 ORTHO05D001910 9.1e-16 86.7 49 85.7
BcaB07g33438 Brassica carinata HOM05D001722 ORTHO05D001910 1.6e-15 85.9 50 88.0
C06p15610 Brassica napus HOM05D001722 ORTHO05D032038 8.5e-14 80.1 47 80.9
Carub.0001s4331 Capsella rubella HOM05D001722 ORTHO05D001910 8.5e-14 80.1 53 79.2
AT1G54080 Arabidopsis thaliana HOM05D001722 ORTHO05D001910 1.9e-13 79.0 53 77.4
BcaB04g17031 Brassica carinata HOM05D001722 ORTHO05D001910 9.4e-13 76.6 49 81.6
CARHR044410 Cardamine hirsuta HOM05D001722 ORTHO05D001910 1.2e-12 76.3 54 72.2
AL1G62780 Arabidopsis lyrata HOM05D001722 ORTHO05D001910 4.7e-12 74.3 49 77.6
Thhalv10020804m.g Eutrema salsugineum HOM05D001722 ORTHO05D001910 1.3e-09 66.2 56 71.4
AL3G26330 Arabidopsis lyrata HOM05D001722 ORTHO05D001910 3.7e-09 64.7 60 66.7
CARHR088960 Cardamine hirsuta HOM05D001722 ORTHO05D001910 3.7e-09 64.7 60 66.7
Sp3g12360 Schrenkiella parvula HOM05D001722 ORTHO05D001910 3.7e-09 64.7 56 69.6
AT3G14100 Arabidopsis thaliana HOM05D001722 ORTHO05D001910 1.8e-08 62.4 62 64.5
Carub.0003s1371 Capsella rubella HOM05D001722 ORTHO05D001910 1.8e-08 62.4 60 65.0
Aa31LG8G1330 Aethionema arabicum HOM05D001722 ORTHO05D001910 5.3e-08 60.8 60 63.3
BcaNung04887 Brassica carinata HOM05D001722 ORTHO05D001910 5.3e-08 60.8 56 66.1
BcaNung06670 Brassica carinata HOM05D001722 ORTHO05D001910 5.3e-08 60.8 56 66.1
Lj9C534G6 Lonicera japonica HOM05D001722 ORTHO05D001910 9.1e-08 60.1 60 60.0
Duzib235G1483 Durio zibethinus HOM05D001722 ORTHO05D001910 3.5e-07 58.2 60 60.0
Phvul.010G127300 Phaseolus vulgaris HOM05D001722 ORTHO05D001910 3.5e-07 58.2 56 58.9
VMungo0331G0869 Vigna mungo HOM05D001722 ORTHO05D001910 3.5e-07 58.2 57 57.9
Glyma.07G041500 Glycine max HOM05D001722 ORTHO05D001910 4.5e-07 57.8 56 58.9
Gohir.D05G141100 Gossypium hirsutum HOM05D001722 ORTHO05D001910 4.5e-07 57.8 60 60.0
Gorai.009G145300 Gossypium raimondii HOM05D001722 ORTHO05D001910 4.5e-07 57.8 60 60.0
Phvul.006G024800 Phaseolus vulgaris HOM05D001722 ORTHO05D001910 4.5e-07 57.8 56 58.9
Thecc.06G124100 Theobroma cacao HOM05D001722 ORTHO05D001910 4.5e-07 57.8 59 61.0
Ciclev10025673m.g Citrus clementina HOM05D001722 ORTHO05D001910 7.7e-07 57.0 60 58.3
GSVIVG01016720001 Vitis vinifera HOM05D001722 ORTHO05D001910 7.7e-07 57.0 58 60.3
Nn8g38581 Nelumbo nucifera HOM05D001722 ORTHO05D001910 1.0e-06 56.6 60 58.3
TAR624G0070 Trochodendron aralioides HOM05D001722 ORTHO05D001910 1.0e-06 56.6 60 58.3
CiPaw.02G133800 Carya illinoinensis HOM05D001722 ORTHO05D001910 1.3e-06 56.2 60 58.3
COL.COLO4_30791 Corchorus olitorius HOM05D001722 ORTHO05D001910 1.3e-06 56.2 60 60.0
Duzib160G0809 Durio zibethinus HOM05D001722 ORTHO05D001910 1.3e-06 56.2 60 60.0
Gohir.A06G193800 Gossypium hirsutum HOM05D001722 ORTHO05D001910 1.3e-06 56.2 60 60.0
Gohir.D06G201600 Gossypium hirsutum HOM05D001722 ORTHO05D001910 1.3e-06 56.2 60 60.0
Gorai.010G235400 Gossypium raimondii HOM05D001722 ORTHO05D001910 1.3e-06 56.2 60 60.0
Manes.04G148000 Manihot esculenta HOM05D001722 ORTHO05D001910 1.3e-06 56.2 60 58.3
Manes.11G016600 Manihot esculenta HOM05D001722 ORTHO05D001910 1.3e-06 56.2 60 58.3
Potri.001G166100 Populus trichocarpa HOM05D001722 ORTHO05D001910 1.3e-06 56.2 60 58.3
HanXRQChr09g0277111 Helianthus annuus HOM05D001722 ORTHO05D001910 1.7e-06 55.8 56 62.5
QL05p003768 Quercus lobata HOM05D001722 ORTHO05D001910 1.7e-06 55.8 59 57.6
MSTRG.22535 Avicennia marina HOM05D001722 ORTHO05D001910 2.2e-06 55.5 59 57.6
Ca_23408_v3 Cicer arietinum L. HOM05D001722 ORTHO05D001910 2.2e-06 55.5 57 59.6
Medtr8g022050 Medicago truncatula HOM05D001722 ORTHO05D001910 2.2e-06 55.5 57 59.6
TPR.G29996 Trifolium pratense HOM05D001722 ORTHO05D001910 2.2e-06 55.5 57 59.6
Actinidia26015 Actinidia chinensis HOM05D001722 ORTHO05D001910 2.9e-06 55.1 62 54.8
SalBow6G1215 Salvia bowleyana HOM05D001722 ORTHO05D001910 2.9e-06 55.1 59 52.5
SalBow6G5272 Salvia bowleyana HOM05D001722 ORTHO05D001910 2.9e-06 55.1 59 52.5
TAR636G0631 Trochodendron aralioides HOM05D001722 ORTHO05D001910 2.9e-06 55.1 60 56.7
MD09G1178500 Malus domestica HOM05D001722 ORTHO05D001910 3.8e-06 54.7 60 56.7
MD17G1148300 Malus domestica HOM05D001722 ORTHO05D001910 3.8e-06 54.7 60 56.7
Psat4g167280 Pisum sativum HOM05D001722 ORTHO05D001910 3.8e-06 54.7 57 57.9
Prupe.3G037700 Prunus persica HOM05D001722 ORTHO05D001910 3.8e-06 54.7 60 56.7
Atru.chr1.4072 Acer truncatum HOM05D001722 ORTHO05D001910 5.0e-06 54.3 60 58.3
CiPaw.01G216200 Carya illinoinensis HOM05D001722 ORTHO05D001910 5.0e-06 54.3 60 55.0
MELO3C024335.2 Cucumis melo HOM05D001722 ORTHO05D001910 5.0e-06 54.3 60 56.7
CsaV3_7G034260 Cucumis sativus L. HOM05D001722 ORTHO05D001910 5.0e-06 54.3 60 56.7
Glyma.16G010100 Glycine max HOM05D001722 ORTHO05D001910 5.0e-06 54.3 56 58.9
Lj3g0004026 Lotus japonicus HOM05D001722 ORTHO05D001910 5.0e-06 54.3 56 58.9
Cpa.g.sc25.147 Carica papaya HOM05D001722 ORTHO05D001910 6.5e-06 53.9 58 58.6
Gohir.A10G056100 Gossypium hirsutum HOM05D001722 ORTHO05D001910 6.5e-06 53.9 60 56.7
Gohir.D10G058000 Gossypium hirsutum HOM05D001722 ORTHO05D001910 6.5e-06 53.9 60 56.7
Gorai.011G062100 Gossypium raimondii HOM05D001722 ORTHO05D001910 6.5e-06 53.9 60 56.7
HanXRQChr10g0311851 Helianthus annuus HOM05D001722 ORTHO05D001910 6.5e-06 53.9 63 55.6
Nn6g35675 Nelumbo nucifera HOM05D001722 ORTHO05D001910 6.5e-06 53.9 61 55.7
Peaxi162Scf00038g01947 Petunia axillaris HOM05D001722 ORTHO05D001910 8.5e-06 53.5 60 55.0


User provided reference genes

Program Settings