Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 4.6e-74 281.2 145 100.0
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 3.3e-48 195.3 133 77.4
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 3.3e-48 195.3 133 77.4
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 3.3e-48 195.3 133 77.4
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 1.0e-41 173.7 133 70.7
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-40 170.2 135 69.6
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-40 170.2 135 69.6
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 2.5e-40 169.1 135 68.9
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 5.6e-40 167.9 133 69.2
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 5.6e-40 167.9 133 69.2
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 7.3e-40 167.5 131 67.9
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.1e-39 166.0 111 77.5
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.8e-39 165.6 131 66.4
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 6.2e-39 164.5 133 67.7
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 8.1e-39 164.1 138 66.7
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.8e-38 162.9 133 66.2
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 3.1e-38 162.2 139 65.5
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 6.9e-38 161.0 138 63.0
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-37 160.2 131 66.4
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.2e-37 160.2 131 66.4
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.2e-37 160.2 131 66.4
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.2e-37 160.2 133 63.9
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 2.9e-36 155.6 136 65.4
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.2e-35 152.1 133 62.4
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 4.2e-35 151.8 130 60.8
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.5e-32 143.3 135 60.0
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.5e-32 143.3 133 60.2
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.5e-32 143.3 133 60.2
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 3.3e-32 142.1 138 60.1
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.3e-31 140.2 139 59.0
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 2.9e-28 129.0 130 55.4
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 7.4e-24 114.4 127 51.2
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 7.4e-24 114.4 127 51.2
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 2.1e-23 112.8 131 48.1
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 2.1e-23 112.8 131 48.1
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 3.7e-23 112.1 113 54.0
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 3.7e-23 112.1 113 52.2
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 3.7e-23 112.1 131 49.6
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.8e-23 111.7 127 50.4
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 1.4e-22 110.2 137 43.1
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.4e-22 110.2 145 44.8
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.1e-22 109.0 132 47.7
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 6.9e-22 107.8 121 50.4
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 9.0e-22 107.5 127 48.0
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 9.0e-22 107.5 134 47.0
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 9.0e-22 107.5 111 53.2
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.2e-21 107.1 133 50.4
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 2.0e-21 106.3 114 53.5
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.6e-21 105.9 140 48.6
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.5e-21 105.1 135 46.7
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.6e-21 104.4 129 46.5
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 7.6e-21 104.4 130 47.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.0e-20 104.0 133 45.9
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 1.0e-20 104.0 113 50.4
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.0e-20 104.0 132 51.5
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.7e-20 103.2 140 47.9
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 1.7e-20 103.2 116 50.0
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 2.2e-20 102.8 130 46.2
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.9e-20 102.4 132 50.0
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 6.5e-20 101.3 115 49.6
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 8.4e-20 100.9 127 46.5
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 8.4e-20 100.9 129 48.1
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 8.4e-20 100.9 136 45.6
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.1e-19 100.5 134 45.5
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.4e-19 100.1 131 48.1
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.9e-19 99.8 148 42.6
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.9e-19 99.8 138 42.8
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 5.5e-19 98.2 137 46.7
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 9.3e-19 97.4 81 60.5
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 9.3e-19 97.4 128 47.7
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 9.3e-19 97.4 129 45.7
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.2e-18 97.1 130 44.6
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.2e-18 97.1 133 47.4
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.2e-18 97.1 83 60.2
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.2e-18 97.1 131 43.5
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.6e-18 96.7 133 40.6
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 2.1e-18 96.3 131 42.0
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 2.7e-18 95.9 136 43.4
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 2.7e-18 95.9 140 42.9
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 4.6e-18 95.1 135 43.7
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 4.6e-18 95.1 113 47.8
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 6.0e-18 94.7 137 43.1
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 7.9e-18 94.4 120 44.2
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 7.9e-18 94.4 134 42.5
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.0e-17 94.0 145 41.4
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.0e-17 94.0 132 44.7
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.0e-17 94.0 139 38.1
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.8e-17 93.2 132 43.2
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.8e-17 93.2 132 47.0
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.3e-17 92.8 113 47.8
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.3e-17 92.8 119 44.5
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 5.1e-17 91.7 136 44.1
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 5.1e-17 91.7 117 46.2
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 6.7e-17 91.3 107 47.7
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 6.7e-17 91.3 123 39.8
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 8.7e-17 90.9 129 42.6
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.1e-16 90.5 89 53.9
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.3e-16 88.6 101 47.5
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 7.4e-16 87.8 129 40.3
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 7.4e-16 87.8 125 42.4
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 9.7e-16 87.4 132 43.9
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.3e-15 87.0 130 43.1
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 2.2e-15 86.3 75 58.7
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.2e-15 86.3 76 56.6
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 2.2e-15 86.3 93 46.2
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 3.7e-15 85.5 93 54.8
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 8.2e-15 84.3 81 51.9
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.8e-14 83.2 57 73.7
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.1e-14 82.4 78 52.6
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 6.9e-14 81.3 148 37.2
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 1.2e-13 80.5 113 40.7
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.2e-13 80.5 68 57.4
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 1.5e-13 80.1 112 46.4
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 2.0e-13 79.7 93 44.1
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 2.0e-13 79.7 124 42.7
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.6e-13 79.3 134 38.8
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 4.5e-13 78.6 131 37.4
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 4.5e-13 78.6 125 37.6
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 5.9e-13 78.2 112 40.2
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 7.7e-13 77.8 132 46.2
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.3e-12 77.0 111 43.2
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.7e-12 76.6 126 37.3
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.9e-12 75.9 136 35.3
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 3.8e-12 75.5 141 36.2
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 5.0e-12 75.1 141 36.2
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.1e-11 73.9 153 35.3
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.4e-11 73.6 136 34.6
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.9e-11 73.2 77 53.2
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 1.9e-11 73.2 81 49.4
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 2.5e-11 72.8 135 38.5
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 4.2e-11 72.0 68 55.9
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 5.5e-11 71.6 129 37.2
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 9.4e-11 70.9 125 37.6
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.6e-10 70.1 128 36.7
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 4.6e-10 68.6 131 33.6
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.4e-09 67.0 123 37.4
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.3e-09 66.2 100 39.0
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.3e-09 66.2 82 43.9
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 8.8e-09 64.3 107 33.6
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 2.0e-08 63.2 114 37.7
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 2.0e-08 63.2 123 34.1
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 5.7e-08 61.6 115 36.5
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 9.7e-08 60.8 114 33.3
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.4e-06 57.0 46 60.9


User provided reference genes

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