Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1842.8 996 100.0
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1585.1 1024 82.9
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1585.1 1024 82.9
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 0.0e+00 1570.8 1010 84.7
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 0.0e+00 1570.8 1010 84.7
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1529.6 1022 83.2
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 0.0e+00 1529.6 1022 83.2
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 0.0e+00 1510.0 1022 80.5
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 0.0e+00 1505.0 1013 81.7
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 0.0e+00 1431.0 1011 76.6
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 0.0e+00 1394.4 1013 75.0
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 0.0e+00 1394.4 1016 75.7
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1388.6 1014 76.4
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 0.0e+00 1382.5 1014 76.1
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1380.5 1012 77.9
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 0.0e+00 1367.8 1012 75.8
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1354.7 1012 74.9
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1354.7 1012 74.9
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 0.0e+00 1317.8 1047 71.2
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 0.0e+00 1206.0 1015 67.5
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 0.0e+00 1198.3 1020 66.7
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 0.0e+00 1087.0 939 65.1
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 2.8e-308 1062.0 675 81.5
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 1.8e-278 963.0 1022 55.0
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 2.3e-270 936.0 1035 53.9
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 2.0e-269 932.9 1029 53.7
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 3.6e-263 912.1 1030 52.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 6.2e-255 884.8 1089 51.0
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 3.1e-254 882.5 1034 52.2
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 5.2e-254 881.7 1086 51.2
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 3.0e-249 865.9 1039 51.8
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 3.9e-249 865.5 1066 51.8
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 1.5e-248 863.6 1031 50.7
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 2.5e-248 862.8 1033 51.0
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 5.6e-248 861.7 1031 50.6
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 8.1e-247 857.8 1031 50.4
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 5.8e-245 851.7 1075 50.2
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 9.9e-245 850.9 1035 50.9
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 4.9e-244 848.6 1111 49.5
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 1.1e-243 847.4 1040 51.0
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.6e-242 843.6 1051 50.6
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 2.1e-242 843.2 969 54.8
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 2.7e-242 842.8 1026 49.9
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 2.7e-242 842.8 1060 49.1
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 7.8e-242 841.3 1051 50.6
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 7.8e-242 841.3 1100 49.7
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 5.1e-241 838.6 1062 51.1
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 5.1e-241 838.6 1132 48.0
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 1.9e-240 836.6 1037 50.3
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.1e-238 830.9 1077 48.3
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 1.8e-238 830.1 1030 49.8
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 1.8e-238 830.1 1032 51.9
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 5.3e-238 828.6 1064 48.2
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 6.9e-238 828.2 1067 49.0
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 1.5e-237 827.0 1036 49.9
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.8e-237 825.1 1042 49.9
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 7.6e-237 824.7 1102 49.0
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 4.9e-236 822.0 1106 47.8
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 8.4e-236 821.2 1042 51.6
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 7.1e-235 818.1 1042 51.4
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 7.1e-235 818.1 1048 49.2
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 7.1e-235 818.1 1028 49.9
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 3.9e-233 812.4 1107 47.0
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 5.1e-233 812.0 1088 50.9
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 1.9e-232 810.1 1054 48.2
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 2.0e-229 800.0 1034 50.2
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 4.5e-229 798.9 1119 46.0
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.7e-228 797.0 1051 49.4
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 1.7e-228 797.0 1035 48.0
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.2e-228 796.6 1018 48.1
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 4.9e-228 795.4 1067 47.6
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 4.3e-224 782.3 1042 50.0
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 3.1e-222 776.2 1048 50.6
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 1.7e-220 770.4 1044 49.1
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 4.2e-219 765.8 1083 46.4
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 1.1e-216 757.7 1020 48.0
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 9.7e-216 754.6 1040 46.8
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 2.2e-215 753.4 926 49.9
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 4.8e-215 752.3 774 56.8
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 5.9e-213 745.3 1033 49.1
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 7.7e-213 745.0 1033 48.0
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 3.8e-212 742.7 1019 50.4
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.9e-211 740.3 1122 43.9
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 1.1e-208 731.1 1051 46.6
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 2.2e-207 726.9 997 46.7
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 2.2e-207 726.9 894 51.7
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 8.2e-207 724.9 1038 46.1
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 8.2e-207 724.9 1022 46.3
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 1.1e-206 724.5 1019 47.8
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 5.9e-205 718.8 937 47.9
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.7e-204 717.2 1026 48.1
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 9.4e-203 711.4 1097 44.7
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.6e-202 710.7 1051 45.4
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 3.7e-199 699.5 1037 48.8
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 4.8e-199 699.1 1091 44.4
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 9.1e-198 694.9 1060 45.3
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.0e-196 691.4 1172 41.2
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 5.5e-195 685.6 1034 44.8
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 3.9e-193 679.5 1108 44.3
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 2.8e-191 673.3 973 45.1
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 1.1e-190 671.4 805 51.1
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 3.8e-188 662.9 891 48.9
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 1.4e-185 654.4 704 54.5
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 5.0e-180 636.0 1174 39.8
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 7.5e-176 622.1 640 56.4
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 4.1e-174 616.3 593 59.0
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.6e-173 614.4 916 44.5
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 5.9e-173 612.5 1058 41.4
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 1.5e-171 607.8 886 47.6
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 8.6e-164 582.0 827 45.1
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 9.5e-163 578.6 794 46.3
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 8.0e-162 575.5 516 61.2
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 1.9e-158 564.3 815 43.9
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 6.0e-157 559.3 797 46.2
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 2.5e-155 553.9 810 44.2
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 9.9e-144 515.4 823 41.9
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 1.6e-141 508.1 1082 39.6
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 8.1e-138 495.7 415 63.1
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.1e-130 471.1 946 38.7
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 4.0e-129 466.8 368 66.3
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 5.3e-129 466.5 369 65.6
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 3.0e-124 450.7 950 38.1
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.6e-117 428.3 928 36.0
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.5e-112 411.8 349 60.2
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 2.2e-111 407.9 722 40.0
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 5.0e-103 380.2 332 63.0
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 1.3e-100 372.1 841 35.9
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.9e-79 301.2 510 40.4
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 3.6e-69 267.7 250 56.4
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 5.2e-68 263.8 379 46.4
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.2e-67 262.7 331 50.5
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 6.1e-61 240.4 451 38.8
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 8.0e-61 240.0 312 45.5
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 4.4e-59 234.2 296 43.9
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 1.9e-54 218.8 573 33.7
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 2.8e-45 188.3 615 28.6
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 3.4e-43 181.4 110 81.8
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.4e-43 181.4 559 37.2
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.4e-43 181.4 559 37.2
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 7.5e-43 180.3 158 58.9
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 9.8e-43 179.9 181 54.7
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 3.0e-39 168.3 151 56.3
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.5e-38 165.2 131 61.8
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.8e-36 159.1 279 35.8
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 9.8e-35 153.3 144 59.7
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.2e-34 152.1 275 36.7
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 5.1e-31 141.0 292 38.7
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 5.1e-31 141.0 120 64.2
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 6.6e-31 140.6 166 48.8
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.9e-30 139.0 194 43.8
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.5e-30 138.7 347 34.0
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 3.1e-28 131.7 260 40.8
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 1.7e-23 115.9 81 70.4
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 5.6e-22 110.9 75 69.3
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 3.6e-21 108.2 75 68.0
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 8.1e-21 107.1 97 59.8
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 6.8e-20 104.0 70 74.3
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.0e-19 102.4 423 33.6
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 2.8e-13 82.0 53 67.9
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 6.9e-12 77.4 102 52.9
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 5.8e-11 74.3 98 41.8
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 2.9e-10 72.0 159 35.8
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 3.8e-10 71.6 57 68.4
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 4.9e-10 71.2 49 63.3
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 5.4e-09 67.8 50 62.0
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 9.3e-09 67.0 250 29.2
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 9.3e-09 67.0 44 63.6
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 4.6e-08 64.7 50 58.0
CARHR134090 Cardamine hirsuta HOM05D000283 ORTHO05D116263 4.6e-08 64.7 50 68.0
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 1.7e-07 62.8 48 68.8
AUR62035526 Chenopodium quinoa HOM05D002494 ORTHO05D002673 9.6e-06 57.0 283 25.8
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 9.6e-06 57.0 252 23.8


User provided reference genes

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