Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 1.4e-157 559.7 305 100.0
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 4.4e-143 511.5 312 92.6
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 2.4e-141 505.8 325 88.3
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 7.0e-141 504.2 325 88.0
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 9.4e-138 493.8 303 92.4
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 3.7e-134 481.9 306 89.9
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 2.9e-131 472.2 311 85.5
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 3.2e-130 468.8 312 86.2
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 1.5e-127 459.9 328 79.6
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 7.5e-127 457.6 327 81.3
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 2.8e-126 455.7 314 84.1
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 1.7e-123 446.4 307 85.3
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 5.2e-120 434.9 318 77.7
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 1.2e-116 423.7 269 87.0
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 1.1e-114 417.2 317 79.5
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 2.8e-113 412.5 225 96.0
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 4.7e-113 411.8 316 80.4
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 5.9e-108 394.8 276 76.4
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 1.0e-107 394.0 270 76.7
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 1.0e-107 394.0 271 77.1
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 1.3e-107 393.7 270 77.0
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 2.3e-107 392.9 296 72.0
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 2.3e-107 392.9 303 71.3
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 5.0e-107 391.7 310 73.2
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 8.6e-107 391.0 275 76.0
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 1.5e-106 390.2 270 77.4
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 1.5e-106 390.2 264 74.2
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 2.5e-106 389.4 298 71.5
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 2.5e-106 389.4 270 77.4
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 4.3e-106 388.7 308 71.8
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 2.8e-105 386.0 304 70.4
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 3.6e-105 385.6 265 75.8
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 3.6e-105 385.6 298 69.5
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 6.2e-105 384.8 297 70.7
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 1.8e-104 383.3 274 75.9
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 2.3e-104 382.9 270 75.9
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 4.0e-104 382.1 311 68.2
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 5.2e-104 381.7 286 73.1
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 8.9e-104 380.9 290 70.7
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 8.9e-104 380.9 264 72.7
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 2.0e-103 379.8 293 70.6
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 2.0e-103 379.8 270 73.3
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 2.6e-103 379.4 270 74.1
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 3.4e-103 379.0 274 73.7
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 5.8e-103 378.3 249 81.9
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 1.3e-102 377.1 312 64.1
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 1.3e-102 377.1 301 70.8
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 8.3e-102 374.4 307 70.7
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 8.3e-102 374.4 271 73.4
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.1e-101 374.0 263 74.1
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 1.9e-101 373.2 281 71.2
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 4.1e-101 372.1 270 73.0
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 4.1e-101 372.1 321 67.6
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 9.2e-101 370.9 286 71.0
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.2e-100 370.5 312 66.7
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 1.2e-100 370.5 308 70.8
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 1.6e-100 370.2 275 73.1
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 3.5e-100 369.0 313 66.5
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 6.0e-100 368.2 258 70.2
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 7.8e-100 367.9 312 66.3
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 7.8e-100 367.9 313 65.2
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 3.9e-99 365.5 281 71.5
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 6.6e-99 364.8 214 94.9
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 6.6e-99 364.8 310 67.7
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 6.6e-99 364.8 312 67.6
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 8.6e-99 364.4 297 63.6
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 8.6e-99 364.4 279 66.7
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 8.6e-99 364.4 310 67.7
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 3.3e-98 362.5 270 72.6
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 4.3e-98 362.1 284 68.7
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 7.3e-98 361.3 268 70.5
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 7.3e-98 361.3 300 64.3
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 9.5e-98 360.9 300 64.3
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 1.2e-97 360.5 275 72.0
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 1.6e-97 360.1 301 69.1
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 3.6e-97 359.0 264 71.6
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 3.6e-97 359.0 305 66.2
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 2.3e-96 356.3 270 71.5
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 3.1e-96 355.9 268 69.8
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 3.1e-96 355.9 270 68.5
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 6.8e-96 354.8 249 77.1
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.1e-93 347.4 247 70.4
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 1.1e-93 347.4 274 69.0
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 9.2e-93 344.4 275 65.5
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 1.2e-92 344.0 217 90.3
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 3.5e-92 342.4 297 65.7
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 1.7e-91 340.1 300 60.3
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 3.9e-91 339.0 225 76.9
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 5.1e-91 338.6 276 70.3
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 1.1e-90 337.4 273 63.4
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 1.9e-90 336.7 295 63.1
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 3.3e-90 335.9 265 68.3
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 5.6e-90 335.1 298 63.4
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 7.3e-90 334.7 258 67.8
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 9.5e-90 334.3 312 64.4
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 2.3e-88 329.7 307 59.3
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 4.4e-87 325.5 374 50.8
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 1.7e-86 323.6 305 59.0
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 5.1e-83 312.0 293 61.8
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 2.5e-82 309.7 228 71.1
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 3.6e-81 305.8 249 63.1
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 6.0e-76 288.5 185 76.8
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 1.1e-72 277.7 271 58.3
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 2.4e-72 276.6 233 68.2
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 3.2e-69 266.2 185 70.8
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 1.2e-68 264.2 186 77.4
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 2.1e-68 263.5 281 55.5
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 6.0e-60 235.3 261 53.6
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 2.3e-59 233.4 128 91.4
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 5.6e-58 228.8 254 50.4
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 2.0e-55 220.3 125 89.6
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 2.5e-53 213.4 251 48.2
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 1.3e-51 207.6 251 50.6
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 1.8e-48 197.2 140 80.0
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 3.1e-48 196.4 191 57.1
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 2.7e-44 183.3 108 98.1
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 1.9e-42 177.2 171 49.7
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 2.1e-28 130.6 148 52.7
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 2.0e-26 124.0 222 36.9
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 4.8e-25 119.4 119 54.6
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 5.3e-24 115.9 68 77.9
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 2.0e-23 114.0 98 59.2
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.3e-19 100.5 79 63.3
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 3.0e-19 100.1 101 54.5
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 1.5e-13 81.3 72 61.1
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 2.0e-10 70.9 69 56.5
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 1.8e-08 64.3 65 58.5
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 7.0e-08 62.4 65 61.5
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 2.0e-07 60.8 62 61.3
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 2.3e-06 57.4 33 69.7


User provided reference genes

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