Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 8.9e-261 903.3 530 100.0
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 8.2e-230 800.4 536 80.2
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 7.2e-226 787.3 535 80.0
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 5.1e-224 781.2 531 78.7
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 5.7e-223 777.7 538 78.3
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 6.3e-222 774.2 538 77.7
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 6.9e-221 770.8 535 78.7
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 1.5e-220 769.6 538 77.9
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 6.5e-219 764.2 537 76.9
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 3.2e-218 761.9 538 76.6
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 1.6e-217 759.6 533 80.3
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 2.2e-211 739.2 531 74.8
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 1.2e-204 716.8 531 72.7
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 1.4e-192 676.8 532 66.9
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 4.7e-161 572.0 522 58.6
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 1.9e-157 560.1 521 67.9
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 3.2e-157 559.3 529 60.9
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 3.5e-156 555.8 521 59.9
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 2.3e-155 553.1 536 66.6
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 2.3e-155 553.1 523 66.9
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 2.3e-155 553.1 517 66.9
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 3.9e-155 552.4 517 66.9
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 6.6e-155 551.6 517 66.9
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 6.6e-155 551.6 521 66.8
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 6.6e-155 551.6 521 59.1
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 1.1e-154 550.8 523 66.7
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 1.1e-154 550.8 522 66.3
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 1.9e-154 550.1 522 66.3
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 7.3e-154 548.1 517 66.3
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 7.3e-154 548.1 527 57.3
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 2.1e-153 546.6 522 61.3
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 3.6e-153 545.8 530 57.2
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 6.2e-153 545.0 527 57.5
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 8.1e-153 544.7 531 57.3
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 1.8e-152 543.5 524 66.6
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 3.1e-152 542.7 523 65.6
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 3.1e-152 542.7 523 65.6
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 5.2e-152 542.0 521 56.0
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 2.9e-150 536.2 548 63.9
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 1.6e-148 530.4 539 63.5
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 6.0e-148 528.5 540 62.4
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.0e-147 527.7 526 56.7
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 1.7e-147 526.9 541 62.7
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.7e-147 526.9 539 62.9
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 6.6e-147 525.0 541 62.1
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.5e-146 523.9 548 56.0
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 2.5e-146 523.1 521 56.6
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 2.5e-146 523.1 521 56.6
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 2.5e-146 523.1 528 55.9
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 9.6e-146 521.2 519 56.6
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 9.6e-146 521.2 547 56.5
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.1e-144 517.7 529 62.0
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 1.5e-143 513.8 526 62.0
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 2.0e-143 513.5 527 53.9
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.7e-142 510.4 521 54.7
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.7e-142 510.4 521 54.7
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 8.4e-142 508.1 527 54.5
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 8.4e-142 508.1 531 55.0
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 5.4e-141 505.4 532 53.8
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 7.1e-141 505.0 532 53.4
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 9.3e-141 504.6 525 52.6
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 1.6e-140 503.8 531 52.9
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 3.5e-140 502.7 524 53.2
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 3.5e-140 502.7 533 52.7
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 7.8e-140 501.5 532 53.4
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 3.0e-139 499.6 515 54.6
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 6.6e-139 498.4 521 56.4
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 4.3e-138 495.7 529 56.1
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 1.6e-137 493.8 517 62.5
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 8.1e-137 491.5 527 52.6
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 1.1e-136 491.1 525 61.9
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 1.8e-136 490.3 525 53.7
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 6.9e-136 488.4 517 62.1
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 3.8e-134 482.6 523 51.4
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 6.4e-134 481.9 482 53.9
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 1.9e-133 480.3 526 58.9
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 1.6e-132 477.2 527 58.8
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 1.1e-130 471.1 526 51.5
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 2.8e-129 466.5 524 59.5
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.1e-128 464.5 526 58.9
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 1.4e-128 464.2 524 59.4
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 9.0e-128 461.5 523 59.1
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.2e-127 461.1 525 58.9
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 7.6e-127 458.4 523 59.1
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 8.4e-126 454.9 526 58.0
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 1.1e-125 454.5 534 48.1
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 1.6e-124 450.7 542 48.2
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 6.0e-124 448.7 535 59.3
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.8e-123 447.2 493 59.2
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 6.2e-121 438.7 529 48.2
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.8e-120 437.2 533 48.2
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 5.3e-120 435.6 530 47.0
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 4.5e-119 432.6 533 47.3
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 5.8e-119 432.2 531 57.6
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 1.0e-118 431.4 451 65.0
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 1.1e-112 411.4 518 56.4
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 2.4e-112 410.2 525 46.9
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.4e-112 410.2 518 54.8
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 9.0e-112 408.3 322 65.8
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 3.8e-110 402.9 513 46.8
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 5.7e-106 389.0 518 44.4
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 2.8e-105 386.7 523 43.0
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 6.3e-105 385.6 529 43.7
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 4.4e-98 362.8 517 44.9
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.2e-97 360.5 503 51.5
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 3.9e-91 339.7 531 42.2
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 2.4e-88 330.5 527 40.0
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 1.9e-77 294.3 517 44.9
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 4.2e-77 293.1 516 47.9
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 2.0e-74 284.3 391 57.0
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.0e-71 274.2 274 52.9
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 2.3e-67 260.8 401 41.9
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 8.9e-67 258.8 522 40.8
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 1.5e-66 258.1 514 34.8
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 3.2e-56 223.8 329 38.3
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 7.8e-55 219.2 504 33.3
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.7e-46 191.4 303 40.6
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 4.9e-41 173.3 128 75.8
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 1.9e-40 171.4 133 70.7
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 3.2e-40 170.6 221 47.5
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 1.3e-38 165.2 400 29.0
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 3.0e-38 164.1 166 62.0
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 5.1e-38 163.3 166 62.7
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 8.1e-36 156.0 523 27.7
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 2.1e-28 131.3 94 61.7
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.4e-24 117.9 303 30.4
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 9.3e-24 115.9 100 61.0
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 2.5e-21 107.8 543 25.8
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 8.1e-20 102.8 236 35.6
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 3.4e-18 97.4 180 37.2
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 1.4e-16 92.0 140 43.6
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 1.5e-13 82.0 69 63.8
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 4.0e-11 73.9 70 54.3
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.1e-08 65.9 54 59.3
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 1.1e-08 65.9 72 50.0
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 2.4e-08 64.7 72 50.0
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.3e-06 58.9 71 40.8
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 1.3e-06 58.9 72 44.4


User provided reference genes

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