Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 2129.4 1074 100.0
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 2107.4 1074 98.7
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 0.0e+00 2057.7 1120 94.6
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1877.4 1097 88.8
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 0.0e+00 1870.9 1201 82.6
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1844.7 1143 85.0
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 0.0e+00 1604.0 1155 75.2
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 0.0e+00 1580.5 1151 74.9
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 0.0e+00 1555.4 1152 73.5
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 0.0e+00 1546.9 1152 74.0
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 0.0e+00 1530.8 1156 72.8
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 0.0e+00 1471.8 1149 71.4
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 0.0e+00 1428.7 1141 68.5
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 0.0e+00 1406.0 1117 68.9
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 0.0e+00 1376.7 1135 67.7
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 0.0e+00 1348.6 1164 65.2
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1250.3 1146 62.5
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1245.7 1141 62.6
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 0.0e+00 1233.0 1145 61.9
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 0.0e+00 1218.8 1112 62.9
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1218.0 1157 61.0
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 0.0e+00 1153.7 691 85.7
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1134.0 1062 61.9
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 0.0e+00 1119.0 1174 54.9
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 0.0e+00 1087.8 1135 55.4
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 2.8e-269 932.6 1146 47.5
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 4.5e-267 925.2 1158 47.4
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 9.9e-267 924.1 1140 47.2
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 4.9e-266 921.8 1194 45.0
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 1.7e-258 896.7 1141 47.2
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 1.9e-257 893.3 1145 46.4
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 2.4e-257 892.9 1168 44.9
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 3.2e-257 892.5 1156 46.4
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 1.0e-255 887.5 1129 46.0
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 1.6e-253 880.2 1168 45.6
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 2.4e-252 876.3 1210 44.2
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 3.8e-250 869.0 1198 44.8
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 4.3e-246 855.5 1118 45.7
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 9.7e-246 854.4 1138 45.5
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.6e-245 853.6 1160 45.4
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 5.9e-243 845.1 1104 45.2
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 1.1e-238 830.9 1142 44.0
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 2.5e-238 829.7 1161 43.5
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 7.4e-238 828.2 899 51.7
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 9.7e-238 827.8 1010 47.6
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 6.9e-236 821.6 1121 45.0
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 1.5e-235 820.5 1168 43.5
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 2.5e-233 813.1 894 50.9
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 6.1e-232 808.5 1130 44.3
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 3.9e-231 805.8 1043 45.2
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 3.3e-230 802.7 1162 43.7
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 2.8e-229 799.7 1152 43.4
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 3.7e-229 799.3 1179 42.5
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 3.8e-226 789.3 1165 42.5
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.4e-225 787.3 1108 43.7
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.2e-224 784.3 1173 42.5
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 4.7e-224 782.3 1167 43.0
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 2.3e-223 780.0 1120 42.6
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 5.2e-223 778.9 1252 41.0
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.1e-222 777.7 1180 41.9
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 4.4e-222 775.8 1088 44.2
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 9.7e-222 774.6 1137 43.0
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 1.3e-221 774.2 1154 42.3
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 6.3e-221 771.9 1078 43.1
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 9.1e-220 768.1 875 49.0
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 4.5e-219 765.8 1059 44.3
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 5.9e-219 765.4 1093 43.6
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 1.0e-218 764.6 1130 41.8
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 2.2e-218 763.5 1165 42.2
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.9e-218 763.1 877 49.1
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 4.2e-217 759.2 898 47.1
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 1.2e-216 757.7 925 47.2
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.8e-215 753.8 1231 39.9
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 6.7e-215 751.9 1089 42.5
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 2.8e-213 746.5 1098 43.8
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 1.8e-212 743.8 1170 40.4
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 7.0e-212 741.9 1099 44.0
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.0e-212 741.9 911 46.9
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 9.1e-212 741.5 1154 40.7
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 2.0e-211 740.3 1158 41.4
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 4.5e-211 739.2 1158 41.0
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 5.5e-209 732.3 1035 43.7
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.6e-208 729.6 646 57.3
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 2.8e-205 719.9 1277 38.6
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 5.9e-203 712.2 910 45.4
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 4.2e-201 706.1 1154 39.9
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 1.4e-199 701.0 1159 39.6
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 1.2e-195 688.0 1067 40.8
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 2.9e-194 683.3 964 43.7
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.7e-189 666.4 888 45.3
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.0e-186 658.3 1062 41.1
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 1.4e-180 637.9 1147 36.9
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 7.0e-180 635.6 1153 37.5
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 7.0e-180 635.6 1153 37.5
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 6.2e-176 622.5 740 47.3
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.7e-173 614.4 992 40.0
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 2.9e-173 613.6 636 53.1
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 8.9e-167 592.0 1080 37.2
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 8.9e-167 592.0 1029 39.6
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 3.4e-166 590.1 638 49.5
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 6.4e-165 585.9 849 41.6
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.8e-159 567.8 871 40.9
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 4.8e-152 543.1 1115 35.1
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 2.2e-149 534.3 921 38.3
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.6e-147 526.6 948 37.0
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.1e-143 515.4 640 46.7
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 5.5e-140 503.1 488 56.4
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 8.4e-133 479.2 763 38.9
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.2e-125 454.5 751 41.4
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.9e-125 454.1 797 39.3
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.0e-122 444.1 463 50.3
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 2.0e-121 441.4 655 42.1
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 1.5e-97 362.1 628 36.3
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 1.8e-90 338.6 640 35.0
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 3.0e-90 337.8 1075 30.3
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 6.6e-85 320.1 313 53.7
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 4.2e-84 317.4 338 49.4
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 8.0e-83 313.2 597 36.5
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.2e-80 305.1 591 36.7
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 7.0e-79 300.1 307 53.1
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.8e-74 285.4 920 30.0
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 3.1e-74 284.6 920 30.0
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.2e-71 274.6 291 49.8
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.1e-66 259.6 280 48.9
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.6e-59 235.7 346 39.3
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 1.7e-56 225.7 421 34.7
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 5.5e-31 141.0 497 31.2
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.4e-26 126.3 865 23.0
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 9.0e-26 123.6 302 30.8
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 3.4e-25 121.7 252 33.7
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 8.4e-24 117.1 246 32.1
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 4.3e-20 104.8 274 35.0
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 4.2e-07 61.6 158 34.8
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 7.2e-07 60.8 64 46.9
BcaB06g27242 Brassica carinata HOM05D005064 ORTHO05D006611 3.6e-06 58.5 59 55.9


User provided reference genes

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