Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 6.5e-213 743.8 379 100.0
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 6.5e-213 743.8 379 100.0
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 4.2e-204 714.5 379 96.6
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 2.4e-199 698.7 380 95.3
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 2.4e-199 698.7 380 95.3
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 3.8e-197 691.4 381 94.5
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.5e-193 679.5 381 91.9
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.5e-193 679.5 383 91.1
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.6e-193 678.7 381 91.9
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 9.7e-193 676.8 384 91.1
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 9.7e-193 676.8 384 91.1
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 2.2e-192 675.6 381 91.1
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 4.8e-192 674.5 384 90.9
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.1e-191 673.3 384 90.9
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 2.0e-190 669.1 384 89.8
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.2e-188 661.4 384 89.3
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.2e-187 659.8 384 88.8
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 8.0e-187 657.1 384 88.3
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.0e-186 656.8 384 87.2
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 4.0e-186 654.8 384 88.3
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 2.3e-178 629.0 384 86.2
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 4.4e-177 624.8 381 86.1
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 5.6e-172 607.8 382 82.7
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 4.1e-159 565.1 366 79.5
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 9.5e-156 553.9 384 78.1
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 8.1e-155 550.8 353 81.0
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.1e-154 550.4 353 80.5
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.1e-154 550.4 354 78.8
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 5.2e-154 548.1 353 80.5
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 6.8e-154 547.7 364 78.0
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 8.9e-154 547.4 372 77.2
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.2e-153 547.0 356 78.7
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 2.6e-153 545.8 356 78.7
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 3.4e-153 545.4 353 79.6
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.3e-152 543.5 365 77.5
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.3e-152 543.5 355 79.2
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.9e-152 542.3 376 76.6
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.7e-152 542.0 350 80.0
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.7e-152 542.0 350 80.0
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.9e-152 541.6 350 80.0
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.4e-151 540.0 354 77.7
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 3.2e-151 538.9 350 80.3
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.2e-151 538.9 356 78.9
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 7.1e-151 537.7 350 79.7
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.2e-150 537.0 355 78.3
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.6e-150 536.6 371 76.3
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 3.5e-150 535.4 354 78.5
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 6.0e-150 534.6 366 76.0
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 6.0e-150 534.6 365 77.3
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.0e-149 533.9 363 76.0
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.0e-149 533.9 363 75.8
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.0e-149 533.9 365 77.0
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.0e-149 533.9 355 77.7
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.0e-149 533.9 386 74.9
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.3e-149 533.5 378 74.1
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.3e-149 533.5 354 77.7
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 2.3e-149 532.7 369 75.1
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 3.0e-149 532.3 348 80.2
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 5.1e-149 531.6 353 77.1
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 5.1e-149 531.6 324 82.1
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 6.6e-149 531.2 354 78.0
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 6.6e-149 531.2 350 78.9
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 8.6e-149 530.8 354 77.4
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.1e-148 530.4 354 77.1
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.1e-148 530.4 348 79.9
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.1e-148 530.4 325 82.2
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.9e-148 529.6 362 75.7
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 2.5e-148 529.3 358 77.9
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.5e-148 529.3 371 75.2
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 3.3e-148 528.9 352 77.6
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 3.3e-148 528.9 352 77.8
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 9.5e-148 527.3 355 76.6
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.2e-147 526.9 352 77.6
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.6e-147 526.6 357 76.5
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.6e-147 526.6 350 78.0
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 2.1e-147 526.2 362 75.4
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 2.8e-147 525.8 347 77.5
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.8e-147 525.8 324 81.8
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 2.8e-147 525.8 356 77.0
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.6e-147 525.4 359 75.5
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.6e-147 525.4 359 75.5
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.6e-147 525.4 352 77.0
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.6e-147 525.4 352 77.0
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 4.7e-147 525.0 357 75.9
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 4.7e-147 525.0 352 77.0
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 6.2e-147 524.6 352 78.7
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 6.2e-147 524.6 328 80.8
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 6.2e-147 524.6 356 76.7
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 8.1e-147 524.2 352 77.0
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.1e-146 523.9 366 76.8
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.4e-146 523.5 384 71.6
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.8e-146 523.1 351 78.3
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.8e-146 521.2 355 75.8
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 8.9e-146 520.8 343 78.7
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.2e-145 520.4 348 77.0
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.2e-145 520.4 324 79.9
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 2.6e-145 519.2 363 74.7
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 3.4e-145 518.8 350 75.4
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 7.6e-145 517.7 367 74.7
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.7e-144 516.5 356 76.1
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 2.2e-144 516.2 370 74.1
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 3.8e-144 515.4 371 74.7
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.4e-144 514.6 356 75.0
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.4e-144 514.6 356 75.0
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.1e-143 513.8 360 75.3
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.1e-143 513.8 384 71.9
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 2.4e-143 512.7 350 76.0
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 4.1e-143 511.9 355 73.8
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.2e-143 510.8 347 75.5
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 3.5e-142 508.8 360 76.4
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 4.6e-142 508.4 343 76.4
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 4.6e-142 508.4 349 75.6
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.0e-141 507.3 349 76.5
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.3e-141 506.9 325 78.5
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-141 506.9 301 83.7
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 8.6e-141 504.2 319 79.9
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 1.9e-140 503.1 317 80.8
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 2.5e-140 502.7 301 83.7
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.6e-139 500.0 364 71.4
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 2.8e-139 499.2 332 77.4
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.4e-138 496.9 351 73.8
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.1e-138 495.7 369 70.2
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 3.1e-138 495.7 352 72.7
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.0e-138 495.4 323 78.6
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.0e-138 495.4 362 72.9
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 9.0e-138 494.2 347 75.8
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 9.0e-138 494.2 352 72.7
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.2e-137 493.8 301 82.4
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.2e-137 493.8 341 74.8
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.0e-137 493.0 382 68.6
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.9e-136 489.2 283 87.3
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 4.9e-136 488.4 437 62.0
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 4.2e-135 485.3 383 69.2
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 9.3e-135 484.2 330 75.8
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 2.7e-134 482.6 283 84.5
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 7.8e-134 481.1 321 76.3
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 5.1e-133 478.4 330 73.6
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.5e-129 466.8 318 76.1
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 2.6e-129 466.1 299 78.6
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 5.8e-129 464.9 322 73.3
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.7e-128 463.4 321 72.9
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 2.2e-128 463.0 342 69.9
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.8e-128 462.2 328 72.3
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 4.9e-128 461.8 319 75.9
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 2.7e-126 456.1 299 76.6
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 2.3e-125 453.0 312 73.4
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 6.4e-120 434.9 301 75.7
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 4.5e-113 412.1 311 68.2
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.4e-106 389.8 320 63.8
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 5.9e-105 385.2 250 79.6
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 9.3e-103 377.9 260 77.3
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 5.7e-100 368.6 268 74.3
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.4e-93 347.4 289 62.6
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 9.7e-92 341.3 229 78.2
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 7.0e-74 282.0 307 53.7
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 9.4e-71 271.6 308 51.9
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 3.7e-67 259.6 185 73.5
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.2e-65 254.6 162 80.9
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 3.6e-62 243.0 224 66.5
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.2e-60 238.0 205 62.0
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 4.9e-59 232.6 224 63.4
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 4.9e-59 232.6 224 63.4
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.0e-48 198.4 112 82.1
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 3.2e-42 176.8 113 79.6
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.7e-40 171.0 104 83.7
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.1e-39 168.3 102 85.3
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.1e-39 168.3 102 85.3
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 7.3e-39 165.6 102 84.3
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 6.2e-38 162.5 98 84.7
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 6.2e-38 162.5 106 80.2
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.0e-36 157.5 107 75.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 2.9e-35 153.7 106 75.5
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.0e-32 145.2 319 34.2
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 4.3e-23 113.2 64 87.5
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.0e-16 92.0 67 74.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.7e-16 91.3 49 91.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 3.1e-13 80.5 61 70.5
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 4.9e-11 73.2 38 89.5
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 5.4e-10 69.7 38 86.8


User provided reference genes

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