Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05044 Brassica carinata HOM05D005508 ORTHO05D006882 2.8e-249 864.8 428 100.0
Sp6g28530 Schrenkiella parvula HOM05D005508 ORTHO05D006882 3.7e-225 784.6 427 89.7
BcaC03g18558 Brassica carinata HOM05D005508 ORTHO05D006882 4.1e-224 781.2 427 89.5
Thhalv10013619m.g Eutrema salsugineum HOM05D005508 ORTHO05D006882 2.4e-211 738.8 428 86.0
Carub.0006s1373 Capsella rubella HOM05D005508 ORTHO05D006882 1.9e-208 729.2 432 82.9
AT5G15550 Arabidopsis thaliana HOM05D005508 ORTHO05D006882 7.1e-208 727.2 432 83.1
AL6G26410 Arabidopsis lyrata HOM05D005508 ORTHO05D006882 9.6e-205 716.8 432 81.5
THA.LOC104820997 Tarenaya hassleriana HOM05D005508 ORTHO05D006882 6.7e-198 694.1 428 80.1
CARHR197750 Cardamine hirsuta HOM05D005508 ORTHO05D006882 1.1e-197 693.3 432 80.3
Aa31LG3G15780 Aethionema arabicum HOM05D005508 ORTHO05D006882 1.3e-193 679.9 431 75.9
C02p07790 Brassica napus HOM05D005508 ORTHO05D006882 1.9e-189 666.0 359 88.6
Cpa.g.sc14.169 Carica papaya HOM05D005508 ORTHO05D006882 1.1e-179 633.6 419 73.5
Gorai.006G010700 Gossypium raimondii HOM05D005508 ORTHO05D006882 1.8e-179 632.9 427 71.9
Eucgr.I02026 Eucalyptus grandis HOM05D005508 ORTHO05D006882 3.1e-179 632.1 429 70.2
Gohir.A09G009900 Gossypium hirsutum HOM05D005508 ORTHO05D006882 3.1e-179 632.1 427 71.9
Gohir.D09G009000 Gossypium hirsutum HOM05D005508 ORTHO05D006882 3.1e-179 632.1 427 71.7
CANSAT64G1484 Cannabis sativa HOM05D005508 ORTHO05D006882 4.1e-179 631.7 431 69.8
CiPaw.04G056000 Carya illinoinensis HOM05D005508 ORTHO05D006882 5.3e-179 631.3 431 69.1
Lj2g0000039 Lotus japonicus HOM05D005508 ORTHO05D006882 9.0e-179 630.6 427 69.6
Ciclev10011739m.g Citrus clementina HOM05D005508 ORTHO05D006882 1.2e-178 630.2 429 70.2
Thecc.04G094900 Theobroma cacao HOM05D005508 ORTHO05D006882 1.5e-178 629.8 427 71.7
Prupe.3G255400 Prunus persica HOM05D005508 ORTHO05D006882 2.6e-178 629.0 434 68.2
GSVIVG01032921001 Vitis vinifera HOM05D005508 ORTHO05D006882 1.3e-177 626.7 435 69.9
COL.COLO4_07024 Corchorus olitorius HOM05D005508 ORTHO05D006882 2.9e-177 625.5 427 71.2
CAN.G588.15 Capsicum annuum HOM05D005508 ORTHO05D006882 3.8e-177 625.2 434 67.7
Phvul.004G035400 Phaseolus vulgaris HOM05D005508 ORTHO05D006882 3.2e-176 622.1 432 69.0
PGSC0003DMG400001639 Solanum tuberosum HOM05D005508 ORTHO05D006882 4.2e-176 621.7 434 69.1
Ca_04302_v3 Cicer arietinum L. HOM05D005508 ORTHO05D006882 5.5e-176 621.3 430 68.4
Glyma.05G027800 Glycine max HOM05D005508 ORTHO05D006882 7.2e-176 620.9 428 69.2
VMungo0464G0521 Vigna mungo HOM05D005508 ORTHO05D006882 2.7e-175 619.0 432 68.3
Potri.017G093300 Populus trichocarpa HOM05D005508 ORTHO05D006882 3.6e-175 618.6 432 69.2
Rhsim10G0042800 Rhododendron simsii HOM05D005508 ORTHO05D006882 3.6e-175 618.6 434 68.0
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 4.6e-175 618.2 427 68.9
Glyma.13G056900 Glycine max HOM05D005508 ORTHO05D006882 6.1e-175 617.8 432 69.0
Sabra17G0082300 Salix brachista HOM05D005508 ORTHO05D006882 1.4e-174 616.7 432 69.0
Glyma.01G086000 Glycine max HOM05D005508 ORTHO05D006882 2.3e-174 615.9 432 68.5
Psat1g067800 Pisum sativum HOM05D005508 ORTHO05D006882 3.0e-174 615.5 431 67.3
PGSC0003DMG400001452 Solanum tuberosum HOM05D005508 ORTHO05D006882 3.0e-174 615.5 429 69.0
Sopen01g053090 Solanum pennellii HOM05D005508 ORTHO05D006882 6.7e-174 614.4 434 68.0
PGR083G1795 Punica granatum HOM05D005508 ORTHO05D006882 8.8e-174 614.0 431 68.4
arahy.Tifrunner.gnm1.ann1.6ZV37H Arachis hypogaea HOM05D005508 ORTHO05D006882 3.3e-173 612.1 433 68.1
Glyma.19G029400 Glycine max HOM05D005508 ORTHO05D006882 3.3e-173 612.1 432 68.5
TPR.G10015 Trifolium pratense HOM05D005508 ORTHO05D006882 3.3e-173 612.1 430 67.4
Lalb_Chr02g0158951 Lupinus albus HOM05D005508 ORTHO05D006882 5.7e-173 611.3 426 68.5
QL10p049508 Quercus lobata HOM05D005508 ORTHO05D006882 7.4e-173 610.9 427 67.9
Sabra04G0069200 Salix brachista HOM05D005508 ORTHO05D006882 9.7e-173 610.5 442 67.0
TAR371G0059 Trochodendron aralioides HOM05D005508 ORTHO05D006882 9.7e-173 610.5 429 68.1
Atru.chr8.461 Acer truncatum HOM05D005508 ORTHO05D006882 2.8e-172 609.0 452 65.7
Peaxi162Scf00166g00526 Petunia axillaris HOM05D005508 ORTHO05D006882 4.8e-172 608.2 434 67.1
Manes.02G054600 Manihot esculenta HOM05D005508 ORTHO05D006882 6.3e-172 607.8 429 66.7
Nitab4.5_0003841g0090 Nicotiana tabacum HOM05D005508 ORTHO05D006882 1.1e-171 607.1 433 67.7
Sopen02g033500 Solanum pennellii HOM05D005508 ORTHO05D006882 1.1e-171 607.1 429 68.3
arahy.Tifrunner.gnm1.ann1.LP06NS Arachis hypogaea HOM05D005508 ORTHO05D006882 1.8e-171 606.3 433 67.7
MELO3C008857.2 Cucumis melo HOM05D005508 ORTHO05D006882 2.4e-171 605.9 431 66.8
Cc07_g04170 Coffea canephora HOM05D005508 ORTHO05D006882 9.1e-171 604.0 435 65.7
Lj4A336G6 Lonicera japonica HOM05D005508 ORTHO05D006882 5.9e-170 601.3 435 66.7
CsaV3_4G011930 Cucumis sativus L. HOM05D005508 ORTHO05D006882 1.7e-169 599.7 431 65.9
Medtr7g099170 Medicago truncatula HOM05D005508 ORTHO05D006882 1.7e-169 599.7 433 66.3
TWI32G0965 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 2.2e-169 599.4 439 66.1
CSS0005994 Camellia sinensis var. sinensis HOM05D005508 ORTHO05D006882 2.5e-168 595.9 432 66.9
Solyc01g111030.2 Solanum lycopersicum HOM05D005508 ORTHO05D006882 4.2e-168 595.1 466 62.9
DCAR_011042 Daucus carota HOM05D005508 ORTHO05D006882 7.2e-168 594.3 441 65.1
FvH4_6g46921 Fragaria vesca HOM05D005508 ORTHO05D006882 2.1e-167 592.8 422 67.3
Cfa007659 Carpinus fangiana HOM05D005508 ORTHO05D006882 2.3e-166 589.3 431 67.3
Nitab4.5_0017643g0010 Nicotiana tabacum HOM05D005508 ORTHO05D006882 2.3e-166 589.3 430 66.3
RcHm_v2.0_Chr2g0165901 Rosa chinensis HOM05D005508 ORTHO05D006882 1.1e-165 587.0 430 66.5
PSO017G4331 Papaver somniferum HOM05D005508 ORTHO05D006882 2.0e-165 586.3 435 67.8
ECA232G0694 Erigeron canadensis HOM05D005508 ORTHO05D006882 2.6e-165 585.9 430 65.8
vmacro05630 Vaccinium macrocarpon HOM05D005508 ORTHO05D006882 7.4e-165 584.3 499 58.3
PSO478G0705 Papaver somniferum HOM05D005508 ORTHO05D006882 2.8e-164 582.4 435 67.4
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 4.8e-164 581.6 433 63.5
MSTRG.3354 Avicennia marina HOM05D005508 ORTHO05D006882 8.2e-164 580.9 428 64.0
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 1.5e-162 576.6 378 72.5
Aqoxy3G02922 Aquilegia oxysepala HOM05D005508 ORTHO05D006882 5.9e-162 574.7 435 63.0
MD09G1066100 Malus domestica HOM05D005508 ORTHO05D006882 1.4e-160 570.1 434 62.7
Solyc02g088780.4 Solanum lycopersicum HOM05D005508 ORTHO05D006882 2.1e-159 566.2 405 68.4
Nn4g23404 Nelumbo nucifera HOM05D005508 ORTHO05D006882 3.6e-159 565.5 408 66.2
Haze_14435 Corylus avellana HOM05D005508 ORTHO05D006882 4.7e-159 565.1 433 64.0
Lsat_1_v5_gn_4_172421 Lactuca sativa HOM05D005508 ORTHO05D006882 3.9e-158 562.0 434 62.9
Os07g0600400 Oryza sativa ssp. japonica HOM05D005508 ORTHO05D006882 1.5e-157 560.1 430 63.0
Zm00001eb326820 Zea mays HOM05D005508 ORTHO05D006882 4.4e-157 558.5 431 63.1
Migut.K01277 Erythranthe guttata HOM05D005508 ORTHO05D006882 1.7e-156 556.6 438 61.2
CDE02G3404 Ceratophyllum demersum HOM05D005508 ORTHO05D006882 8.2e-156 554.3 438 63.9
Oeu007065.1 Olea europaea HOM05D005508 ORTHO05D006882 1.6e-154 550.1 434 60.6
FAN14G5804 Fragaria x ananassa HOM05D005508 ORTHO05D010430 2.2e-153 546.2 411 64.7
FAN05G2519 Fragaria x ananassa HOM05D005508 ORTHO05D010430 1.1e-152 543.9 422 63.0
Lj4C332G1 Lonicera japonica HOM05D005508 ORTHO05D006882 1.5e-152 543.5 435 63.0
Hund05300 Selenicereus undatus HOM05D005508 ORTHO05D006882 2.5e-152 542.7 437 61.3
FAN02G1587 Fragaria x ananassa HOM05D005508 ORTHO05D010430 7.2e-152 541.2 391 66.5
SGA_v2.0_scaffold148G36399 Striga asiatica HOM05D005508 ORTHO05D006882 1.0e-150 537.3 381 66.1
ClCG10G002410 Citrullus lanatus HOM05D005508 ORTHO05D006882 1.4e-150 537.0 450 60.0
Dinv33825 Davidia involucrata HOM05D005508 ORTHO05D006882 1.3e-148 530.4 403 64.0
AUR62029195 Chenopodium quinoa HOM05D005508 ORTHO05D006882 1.4e-147 526.9 432 59.0
AUR62014947 Chenopodium quinoa HOM05D005508 ORTHO05D006882 2.4e-147 526.2 432 59.0
ATR0626G324 Amborella trichopoda HOM05D005508 ORTHO05D006882 7.7e-146 521.2 434 58.3
HanXRQChr17g0551711 Helianthus annuus HOM05D005508 ORTHO05D006882 2.2e-145 519.6 386 65.8
SalBow1G5707 Salvia bowleyana HOM05D005508 ORTHO05D006882 3.6e-135 485.7 433 55.2
Ah.10g032240 Amaranthus hybridus HOM05D005508 ORTHO05D006882 1.4e-134 483.8 472 52.3
unitig_747.g21846 Utricularia gibba HOM05D005508 ORTHO05D006882 1.5e-133 480.3 412 56.6
SalBow1G3414 Salvia bowleyana HOM05D005508 ORTHO05D006882 6.3e-132 474.9 433 54.5
Lsat_1_v5_gn_5_138080 Lactuca sativa HOM05D005508 ORTHO05D006882 5.6e-128 461.8 407 58.0
SEGI_38227 Sequoiadendron giganteum HOM05D005508 ORTHO05D006882 9.5e-128 461.1 421 54.2
MD17G1058800 Malus domestica HOM05D005508 ORTHO05D006882 8.9e-126 454.5 516 49.2
Pp3c23_13260 Physcomitrium patens HOM05D005508 ORTHO05D006882 1.4e-123 447.2 430 52.6
Duzib187G1075 Durio zibethinus HOM05D005508 ORTHO05D006882 2.7e-122 443.0 427 55.7
EL10Ac2g03136 Beta vulgaris HOM05D005508 ORTHO05D006882 4.6e-122 442.2 448 52.0
SHI01216 Sapria himalayana HOM05D005508 ORTHO05D006882 1.5e-117 427.2 431 52.0
Mapoly0212s0005 Marchantia polymorpha HOM05D005508 ORTHO05D006882 4.9e-116 422.2 426 50.9
Sc10g0004650 Simmondsia chinensis HOM05D005508 ORTHO05D006882 1.2e-114 417.5 344 60.8
SMO172G0157 Selaginella moellendorffii HOM05D005508 ORTHO05D006882 4.6e-114 415.6 412 50.7
AagrBONN_evm.TU.Sc2ySwM_228.2684 Anthoceros agrestis HOM05D005508 ORTHO05D006882 9.9e-109 397.9 470 45.7
Cfa007661 Carpinus fangiana HOM05D005508 ORTHO05D006882 1.7e-84 317.4 272 62.5
TPR.G17839 Trifolium pratense HOM05D005508 ORTHO05D006882 1.7e-84 317.4 206 68.9
CBR_g18642 Chara braunii HOM05D005508 ORTHO05D006882 6.2e-79 298.9 415 42.4
Cre17.g710100 Chlamydomonas reinhardtii HOM05D005508 ORTHO05D006882 1.9e-75 287.3 449 39.6
TPR.G17852 Trifolium pratense HOM05D005508 ORTHO05D006882 3.4e-69 266.5 218 63.3
TAR622G1292 Trochodendron aralioides HOM05D005508 ORTHO05D006882 8.4e-68 261.9 256 53.9
Lj2g0016184 Lotus japonicus HOM05D005508 ORTHO05D006882 1.9e-64 250.8 301 47.8
MCO06G049 Micromonas commoda HOM05D005508 ORTHO05D006882 1.8e-62 244.2 442 33.3
HPP92_025853 Vanilla planifolia HOM05D005508 ORTHO05D006882 7.7e-61 238.8 259 51.7
TAR622G0687 Trochodendron aralioides HOM05D005508 ORTHO05D006882 7.9e-58 228.8 124 80.6
PRCOL_00003700 Prasinoderma coloniale HOM05D005508 ORTHO05D006882 1.5e-56 224.6 464 32.8
HPP92_025854 Vanilla planifolia HOM05D005508 ORTHO05D006882 1.5e-56 224.6 132 78.0
MBI16_g10277_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D030056 6.5e-52 209.1 157 63.1
C09p61540 Brassica napus HOM05D005508 ORTHO05D006882 1.3e-44 184.9 87 94.3
BcaC04g18902 Brassica carinata HOM05D000941 ORTHO05D000882 3.7e-39 166.8 84 90.5
BolC9t58917H Brassica oleracea HOM05D005508 ORTHO05D006882 3.7e-39 166.8 84 90.5
Hund12433 Selenicereus undatus HOM05D005508 ORTHO05D006882 1.7e-36 157.9 91 75.8
BraA08t32798Z Brassica rapa HOM05D005508 ORTHO05D006882 1.4e-33 148.3 216 46.8
TWI34G1701 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 3.0e-33 147.1 131 61.8
A02p03100 Brassica napus HOM05D005508 ORTHO05D006882 7.7e-21 105.9 49 93.9
C03p08200 Brassica napus HOM05D005508 ORTHO05D006882 1.7e-20 104.8 49 93.9
AUR62014946 Chenopodium quinoa HOM05D005508 ORTHO05D006882 3.0e-17 94.0 223 32.7
Gohir.A13G117650 Gossypium hirsutum HOM05D005508 ORTHO05D006882 3.2e-14 84.0 53 69.8
Gohir.A10G166950 Gossypium hirsutum HOM05D005508 ORTHO05D006882 5.4e-14 83.2 51 72.5
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 3.5e-13 80.5 53 67.9
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.3e-12 77.8 46 73.9
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 1.1e-11 75.5 356 24.2
SHI29385 Sapria himalayana HOM05D005508 ORTHO05D006882 9.5e-11 72.4 79 46.8
SHI29392 Sapria himalayana HOM05D005508 ORTHO05D006882 4.7e-10 70.1 64 60.9
SHI29386 Sapria himalayana HOM05D005508 ORTHO05D010077 3.1e-09 67.4 80 46.2
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 1.2e-08 65.5 39 74.4
Eucgr.K00076 Eucalyptus grandis HOM05D004758 ORTHO05D006063 2.0e-08 64.7 137 32.1
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 5.8e-08 63.2 280 23.9
Peaxi162Scf00207g00023 Petunia axillaris HOM05D002288 ORTHO05D002894 9.8e-08 62.4 269 27.5
RcHm_v2.0_Chr2g0119791 Rosa chinensis HOM05D006430 ORTHO05D007585 1.3e-07 62.0 321 24.0
FAN05G3385 Fragaria x ananassa HOM05D006430 ORTHO05D007585 2.2e-07 61.2 315 24.1
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 2.9e-07 60.8 338 25.4
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 2.9e-07 60.8 261 23.4
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 6.4e-07 59.7 347 20.2
CBR_g74640 Chara braunii HOM05D002288 ORTHO05D002894 1.1e-06 58.9 222 26.1
CiPaw.04G191000 Carya illinoinensis HOM05D006183 ORTHO05D007844 1.9e-06 58.2 237 25.7
Sp6g17980 Schrenkiella parvula HOM05D005961 ORTHO05D007391 1.9e-06 58.2 224 28.1
A10p22470 Brassica napus HOM05D004758 ORTHO05D006063 2.4e-06 57.8 178 27.5
BraA10t44306Z Brassica rapa HOM05D004758 ORTHO05D006063 2.4e-06 57.8 178 27.5
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 2.4e-06 57.8 186 26.9
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 2.4e-06 57.8 161 28.6
AL8G31760 Arabidopsis lyrata HOM05D005961 ORTHO05D007391 3.2e-06 57.4 224 27.7
AT5G56130 Arabidopsis thaliana HOM05D005961 ORTHO05D007391 3.2e-06 57.4 224 27.7
CDE03G0125 Ceratophyllum demersum HOM05D005961 ORTHO05D007391 3.2e-06 57.4 146 32.9
Sp6g27370 Schrenkiella parvula HOM05D004758 ORTHO05D006063 3.2e-06 57.4 180 27.8
Aa31LG3G12040 Aethionema arabicum HOM05D005961 ORTHO05D007391 4.1e-06 57.0 148 31.8
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 4.1e-06 57.0 255 24.3
Lj3P1062T48 Lonicera japonica HOM05D000453 ORTHO05D000387 4.1e-06 57.0 170 28.2
MSTRG.4561 Avicennia marina HOM05D002288 ORTHO05D002894 5.4e-06 56.6 246 26.0
BcaC04g18853 Brassica carinata HOM05D004758 ORTHO05D006063 5.4e-06 56.6 178 27.5
Carub.0008s1645 Capsella rubella HOM05D005961 ORTHO05D007391 5.4e-06 56.6 224 27.7
Gohir.A13G156800 Gossypium hirsutum HOM05D004758 ORTHO05D006063 5.4e-06 56.6 137 29.9
Hund18298 Selenicereus undatus HOM05D006183 ORTHO05D007844 5.4e-06 56.6 234 26.1
AL6G27760 Arabidopsis lyrata HOM05D004758 ORTHO05D006063 7.0e-06 56.2 136 27.2
BcaC04g20139 Brassica carinata HOM05D005961 ORTHO05D007391 7.0e-06 56.2 232 28.0
Carub.0007s0584 Capsella rubella HOM05D003825 ORTHO05D004491 7.0e-06 56.2 172 27.9
QL08p000733 Quercus lobata HOM05D005961 ORTHO05D007391 7.0e-06 56.2 146 32.9
BcaB08g35978 Brassica carinata HOM05D005961 ORTHO05D007391 9.2e-06 55.8 232 28.0
BcaC03g18515 Brassica carinata HOM05D004758 ORTHO05D006063 9.2e-06 55.8 178 27.5
A02p03760 Brassica napus HOM05D004758 ORTHO05D006063 9.2e-06 55.8 178 27.5
A10p13350 Brassica napus HOM05D005961 ORTHO05D007391 9.2e-06 55.8 232 28.0
C02p08570 Brassica napus HOM05D004758 ORTHO05D006063 9.2e-06 55.8 178 27.5
C09p47280 Brassica napus HOM05D005961 ORTHO05D007391 9.2e-06 55.8 232 28.0
BolC2t06772H Brassica oleracea HOM05D004758 ORTHO05D006063 9.2e-06 55.8 178 27.5
BolC9t57585H Brassica oleracea HOM05D005961 ORTHO05D007391 9.2e-06 55.8 232 28.0
BolC9t58865H Brassica oleracea HOM05D004758 ORTHO05D006063 9.2e-06 55.8 178 27.0
BraA02t05341Z Brassica rapa HOM05D004758 ORTHO05D006063 9.2e-06 55.8 178 27.5
BraA06t23633Z Brassica rapa HOM05D002288 ORTHO05D002894 9.2e-06 55.8 276 26.1
BraA10t43436Z Brassica rapa HOM05D005961 ORTHO05D007391 9.2e-06 55.8 232 28.0
Carub.0006s1497 Capsella rubella HOM05D004758 ORTHO05D006063 9.2e-06 55.8 161 27.3
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 9.2e-06 55.8 139 26.6


User provided reference genes

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