Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04484 Brassica carinata HOM05D000068 ORTHO05D004908 7.2e-226 786.9 410 100.0
BcaB01g04535 Brassica carinata HOM05D000068 ORTHO05D004908 2.5e-210 735.3 414 95.2
BolC3t13890H Brassica oleracea HOM05D000068 ORTHO05D004908 2.5e-210 735.3 414 95.2
C03p14480 Brassica napus HOM05D000068 ORTHO05D004908 3.3e-210 734.9 412 95.1
A03p12330 Brassica napus HOM05D000068 ORTHO05D004908 2.1e-209 732.3 414 94.2
BraA03t10545Z Brassica rapa HOM05D000068 ORTHO05D004908 4.7e-209 731.1 414 94.0
BcaB01g04541 Brassica carinata HOM05D000068 ORTHO05D004908 2.8e-193 678.7 419 88.5
Sp6g19930 Schrenkiella parvula HOM05D000068 ORTHO05D004908 2.3e-192 675.6 420 88.3
BraA10t43629Z Brassica rapa HOM05D000068 ORTHO05D004908 1.2e-188 663.3 420 87.9
C09p50100 Brassica napus HOM05D000068 ORTHO05D004908 3.5e-188 661.8 415 87.5
Thhalv10012795m.g Eutrema salsugineum HOM05D000068 ORTHO05D004908 1.0e-187 660.2 418 87.1
A10p15950 Brassica napus HOM05D000068 ORTHO05D004908 5.6e-186 654.4 418 87.3
Carub.0008s1881 Capsella rubella HOM05D000068 ORTHO05D004908 1.7e-182 642.9 420 84.3
AL8G34370 Arabidopsis lyrata HOM05D000068 ORTHO05D004908 4.3e-178 628.2 423 82.3
BcaC04g19897 Brassica carinata HOM05D000068 ORTHO05D004908 3.6e-177 625.2 425 84.0
Aa31LG11G60 Aethionema arabicum HOM05D000068 ORTHO05D004908 1.4e-176 623.2 415 83.1
BolC9t57863H Brassica oleracea HOM05D000068 ORTHO05D004908 6.9e-176 620.9 422 83.4
AT5G58270 Arabidopsis thaliana HOM05D000068 ORTHO05D004908 1.9e-173 612.8 423 80.9
Aa31LG10G11520 Aethionema arabicum HOM05D000068 ORTHO05D004908 5.4e-165 584.7 410 79.0
THA.LOC104819154 Tarenaya hassleriana HOM05D000068 ORTHO05D004908 1.1e-152 543.9 425 73.9
Haze_24493 Corylus avellana HOM05D000068 ORTHO05D004908 2.4e-144 516.2 363 75.2
CANSAT54G1816 Cannabis sativa HOM05D000068 ORTHO05D004908 5.3e-144 515.0 371 75.5
Potri.013G160500 Populus trichocarpa HOM05D000068 ORTHO05D004908 1.5e-143 513.5 369 75.3
FAN25G2097 Fragaria x ananassa HOM05D000068 ORTHO05D004908 5.9e-143 511.5 357 77.9
arahy.Tifrunner.gnm1.ann1.953C08 Arachis hypogaea HOM05D000068 ORTHO05D004908 1.7e-142 510.0 380 71.8
FvH4_3g41120 Fragaria vesca HOM05D000068 ORTHO05D004908 1.7e-142 510.0 388 72.7
FAN11G2110 Fragaria x ananassa HOM05D000068 ORTHO05D004908 2.9e-142 509.2 388 72.7
RcHm_v2.0_Chr5g0073901 Rosa chinensis HOM05D000068 ORTHO05D004908 2.9e-142 509.2 358 77.4
ClCG02G018950 Citrullus lanatus HOM05D000068 ORTHO05D004908 3.8e-142 508.8 362 75.1
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 5.0e-142 508.4 380 71.6
PGR102G3090 Punica granatum HOM05D000068 ORTHO05D004908 5.0e-142 508.4 360 75.0
Prupe.6G038500 Prunus persica HOM05D000068 ORTHO05D004908 8.5e-142 507.7 357 77.0
FAN21G0421 Fragaria x ananassa HOM05D000068 ORTHO05D004908 1.1e-141 507.3 385 72.7
CsaV3_6G013240 Cucumis sativus L. HOM05D000068 ORTHO05D004908 1.4e-141 506.9 362 74.6
Duzib168G2364 Durio zibethinus HOM05D000068 ORTHO05D004908 1.9e-141 506.5 367 76.6
MELO3C019594.2 Cucumis melo HOM05D000068 ORTHO05D004908 3.2e-141 505.8 382 71.7
Lalb_Chr17g0345721 Lupinus albus HOM05D000068 ORTHO05D004908 9.4e-141 504.2 369 74.5
TWI31G0374 Tripterygium wilfordii HOM05D000068 ORTHO05D004908 3.6e-140 502.3 399 69.4
Sed0017529 Sechium edule HOM05D000068 ORTHO05D004908 4.6e-140 501.9 395 69.6
Cfa011859 Carpinus fangiana HOM05D000068 ORTHO05D004908 6.1e-140 501.5 359 73.8
MD03G1047300 Malus domestica HOM05D000068 ORTHO05D004908 1.0e-139 500.7 357 75.9
MD11G1049800 Malus domestica HOM05D000068 ORTHO05D004908 5.1e-139 498.4 357 75.6
AUR62031258 Chenopodium quinoa HOM05D000068 ORTHO05D004908 8.8e-139 497.7 330 80.6
COL.COLO4_11230 Corchorus olitorius HOM05D000068 ORTHO05D004908 8.8e-139 497.7 335 79.4
Cpa.g.sc2.263 Carica papaya HOM05D000068 ORTHO05D004908 1.5e-138 496.9 373 73.2
Thhalv10027580m.g Eutrema salsugineum HOM05D000068 ORTHO05D004908 1.5e-138 496.9 415 69.2
Atru.chr10.2353 Acer truncatum HOM05D000068 ORTHO05D004908 2.0e-138 496.5 395 72.4
GSVIVG01024527001 Vitis vinifera HOM05D000068 ORTHO05D004908 2.0e-138 496.5 362 74.0
AUR62027443 Chenopodium quinoa HOM05D000068 ORTHO05D004908 2.5e-138 496.1 330 80.3
Eucgr.B04035 Eucalyptus grandis HOM05D000068 ORTHO05D004908 2.5e-138 496.1 418 68.2
Thecc.09G365900 Theobroma cacao HOM05D000068 ORTHO05D004908 3.3e-138 495.7 433 67.4
Sed0027288 Sechium edule HOM05D000068 ORTHO05D004908 5.7e-138 495.0 384 70.3
Gohir.D03G145900 Gossypium hirsutum HOM05D000068 ORTHO05D004908 7.4e-138 494.6 365 74.2
Gorai.003G153100 Gossypium raimondii HOM05D000068 ORTHO05D004908 7.4e-138 494.6 365 74.2
Sabra19G0129100 Salix brachista HOM05D000068 ORTHO05D004908 2.8e-137 492.7 421 65.8
Gohir.A03G022800 Gossypium hirsutum HOM05D000068 ORTHO05D004908 4.8e-137 491.9 365 74.0
Ca_05731_v3 Cicer arietinum L. HOM05D000068 ORTHO05D004908 8.2e-137 491.1 420 66.4
FAN16G0787 Fragaria x ananassa HOM05D000068 ORTHO05D004908 1.4e-136 490.3 398 69.8
Ciclev10000439m.g Citrus clementina HOM05D000068 ORTHO05D004908 1.8e-136 490.0 380 72.1
Lalb_Chr04g0251601 Lupinus albus HOM05D000068 ORTHO05D004908 1.8e-136 490.0 345 75.7
Actinidia34509 Actinidia chinensis HOM05D000068 ORTHO05D004908 2.4e-136 489.6 361 73.7
Potri.019G132800 Populus trichocarpa HOM05D000068 ORTHO05D004908 3.1e-136 489.2 344 76.7
Sabra13G0128400 Salix brachista HOM05D000068 ORTHO05D004908 3.1e-136 489.2 386 69.7
Medtr5g075960 Medicago truncatula HOM05D000068 ORTHO05D004908 4.1e-136 488.8 358 73.7
BolC1t01053H Brassica oleracea HOM05D000068 ORTHO05D004908 5.3e-136 488.4 391 71.6
CiPaw.14G048500 Carya illinoinensis HOM05D000068 ORTHO05D004908 5.3e-136 488.4 428 66.4
A01p09310 Brassica napus HOM05D000068 ORTHO05D004908 6.9e-136 488.0 388 71.4
BraA01t00875Z Brassica rapa HOM05D000068 ORTHO05D004908 6.9e-136 488.0 388 71.4
Carub.0007s1203 Capsella rubella HOM05D000068 ORTHO05D004908 1.2e-135 487.3 392 70.9
EL10Ac8g19280 Beta vulgaris HOM05D000068 ORTHO05D004908 1.5e-135 486.9 323 79.6
C01p10890 Brassica napus HOM05D000068 ORTHO05D004908 2.0e-135 486.5 391 71.4
LjContig00141g0025258 Lotus japonicus HOM05D000068 ORTHO05D004908 3.4e-135 485.7 396 67.9
Oeu034744.1 Olea europaea HOM05D000068 ORTHO05D004908 3.4e-135 485.7 357 72.8
CiPaw.13G060000 Carya illinoinensis HOM05D000068 ORTHO05D004908 4.5e-135 485.3 373 70.5
BcaNung04291 Brassica carinata HOM05D000068 ORTHO05D004908 5.9e-135 485.0 393 70.5
PSO339G5917 Papaver somniferum HOM05D000068 ORTHO05D004908 5.9e-135 485.0 362 72.1
PSO384G2518 Papaver somniferum HOM05D000068 ORTHO05D004908 5.9e-135 485.0 362 72.1
HanXRQChr08g0231151 Helianthus annuus HOM05D000068 ORTHO05D004908 1.0e-134 484.2 389 67.9
MSTRG.21272 Avicennia marina HOM05D000068 ORTHO05D004908 1.7e-134 483.4 357 72.5
TAR633G0152 Trochodendron aralioides HOM05D000068 ORTHO05D004908 1.7e-134 483.4 373 71.3
QL01p023679 Quercus lobata HOM05D000068 ORTHO05D004908 2.2e-134 483.0 428 64.7
Sc21g0004810 Simmondsia chinensis HOM05D000068 ORTHO05D004908 2.2e-134 483.0 368 71.2
Nn7g37145 Nelumbo nucifera HOM05D000068 ORTHO05D004908 2.9e-134 482.6 362 71.0
Sp7g26600 Schrenkiella parvula HOM05D000068 ORTHO05D004908 2.9e-134 482.6 416 67.8
Lsat_1_v5_gn_5_176940 Lactuca sativa HOM05D000068 ORTHO05D004908 5.0e-134 481.9 360 72.5
Nitab4.5_0001025g0040 Nicotiana tabacum HOM05D000068 ORTHO05D004908 5.0e-134 481.9 417 66.7
Psat2g050120 Pisum sativum HOM05D000068 ORTHO05D004908 8.5e-134 481.1 411 67.4
Actinidia23828 Actinidia chinensis HOM05D000068 ORTHO05D004908 1.4e-133 480.3 381 69.8
Aqoxy2G00707 Aquilegia oxysepala HOM05D000068 ORTHO05D004908 1.4e-133 480.3 418 65.1
BcaNung04693 Brassica carinata HOM05D000068 ORTHO05D004908 1.4e-133 480.3 390 70.8
AL7G23910 Arabidopsis lyrata HOM05D000068 ORTHO05D004908 2.5e-133 479.6 387 70.8
Cc01_g15510 Coffea canephora HOM05D000068 ORTHO05D004908 2.5e-133 479.6 331 75.8
Lsat_1_v5_gn_9_15441 Lactuca sativa HOM05D000068 ORTHO05D004908 2.5e-133 479.6 368 70.4
TPR.G15393 Trifolium pratense HOM05D000068 ORTHO05D004908 2.5e-133 479.6 400 66.8
Manes.02G209032 Manihot esculenta HOM05D000068 ORTHO05D004908 5.5e-133 478.4 358 72.1
Solyc09g055350.3 Solanum lycopersicum HOM05D000068 ORTHO05D004908 5.5e-133 478.4 415 64.8
Sopen09g017780 Solanum pennellii HOM05D000068 ORTHO05D004908 5.5e-133 478.4 397 66.5
AL7G23920 Arabidopsis lyrata HOM05D000068 ORTHO05D004908 1.2e-132 477.2 393 69.2
SalBow6G1344 Salvia bowleyana HOM05D000068 ORTHO05D004908 2.1e-132 476.5 333 74.8
Lj2A1105G55 Lonicera japonica HOM05D000068 ORTHO05D004908 3.0e-131 472.6 305 81.0
Migut.D00800 Erythranthe guttata HOM05D000068 ORTHO05D004908 5.1e-131 471.9 358 71.5
ECA248G2583 Erigeron canadensis HOM05D000068 ORTHO05D004908 8.8e-131 471.1 322 77.0
Peaxi162Scf00766g00210 Petunia axillaris HOM05D000068 ORTHO05D004908 8.8e-131 471.1 424 64.6
ATR1127G155 Amborella trichopoda HOM05D000068 ORTHO05D004908 2.6e-130 469.5 368 69.6
HanXRQChr11g0338251 Helianthus annuus HOM05D000068 ORTHO05D004908 5.7e-130 468.4 372 71.0
HanXRQChr11g0342501 Helianthus annuus HOM05D000068 ORTHO05D004908 5.7e-130 468.4 372 71.0
ECA247G3429 Erigeron canadensis HOM05D000068 ORTHO05D004908 3.7e-129 465.7 375 68.3
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 5.3e-128 461.8 354 72.6
Glyma.02G238300 Glycine max HOM05D000068 ORTHO05D004908 2.2e-126 456.4 373 69.2
AT4G28630 Arabidopsis thaliana HOM05D000068 ORTHO05D004908 3.8e-126 455.7 388 67.3
PSO675G8940 Papaver somniferum HOM05D000068 ORTHO05D004908 3.8e-126 455.7 373 65.4
PSO541G0861 Papaver somniferum HOM05D000068 ORTHO05D004908 1.1e-125 454.1 412 61.9
Medtr5g075955 Medicago truncatula HOM05D000068 ORTHO05D004908 1.5e-125 453.8 411 62.8
Phvul.008G243800 Phaseolus vulgaris HOM05D000068 ORTHO05D004908 2.5e-125 453.0 368 67.4
Glyma.14G207200 Glycine max HOM05D000068 ORTHO05D004908 7.2e-125 451.4 424 64.9
AT4G28620 Arabidopsis thaliana HOM05D000068 ORTHO05D004908 1.2e-124 450.7 388 67.0
SEGI_00370 Sequoiadendron giganteum HOM05D000068 ORTHO05D004908 2.8e-121 439.5 302 74.5
Os06g0128300 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D004908 2.0e-119 433.3 360 65.6
Zm00001eb015840 Zea mays HOM05D000068 ORTHO05D004908 3.2e-117 426.0 322 69.6
Mapoly0049s0019 Marchantia polymorpha HOM05D000068 ORTHO05D004908 1.0e-115 421.0 348 64.7
Oeu034745.1 Olea europaea HOM05D000068 ORTHO05D004908 1.5e-114 417.2 357 64.4
Rhsim01G0244900 Rhododendron simsii HOM05D000068 ORTHO05D004908 1.5e-114 417.2 393 60.3
unitig_62.g23946 Utricularia gibba HOM05D000068 ORTHO05D004908 8.3e-113 411.4 360 65.0
Nitab4.5_0000195g0110 Nicotiana tabacum HOM05D000068 ORTHO05D004908 2.7e-111 406.4 419 59.4
Oeu023896.3 Olea europaea HOM05D000068 ORTHO05D004908 1.0e-110 404.4 310 71.3
TPR.G15395 Trifolium pratense HOM05D000068 ORTHO05D004908 1.0e-110 404.4 270 78.5
Pp3c1_32090 Physcomitrium patens HOM05D000068 ORTHO05D004908 1.3e-110 404.1 375 60.0
DCAR_012718 Daucus carota HOM05D000068 ORTHO05D004908 5.0e-110 402.1 305 70.5
SGA_v2.0_scaffold54G19451 Striga asiatica HOM05D000068 ORTHO05D004908 5.5e-109 398.7 411 58.2
DCAR_018588 Daucus carota HOM05D000068 ORTHO05D004908 1.0e-107 394.4 357 62.7
AagrBONN_evm.TU.Sc2ySwM_228.5693 Anthoceros agrestis HOM05D000068 ORTHO05D004908 1.2e-106 391.0 357 61.3
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 1.2e-106 391.0 369 62.6
CBR_g866 Chara braunii HOM05D000068 ORTHO05D004908 1.6e-103 380.6 342 61.4
SGA_v2.0_scaffold20G09281 Striga asiatica HOM05D000068 ORTHO05D004908 4.5e-103 379.0 359 61.3
HPP92_001440 Vanilla planifolia HOM05D000068 ORTHO05D004908 4.7e-100 369.0 325 64.3
SMO143G0068 Selaginella moellendorffii HOM05D000068 ORTHO05D004908 6.3e-97 358.6 312 62.8
vmacro14655 Vaccinium macrocarpon HOM05D000068 ORTHO05D004908 1.4e-96 357.5 500 46.2
Pp3c14_15010 Physcomitrium patens HOM05D000068 ORTHO05D004908 3.3e-93 346.3 295 65.8
Manes.10G082900 Manihot esculenta HOM05D000068 ORTHO05D004908 5.4e-88 328.9 265 68.7
MCO05G572 Micromonas commoda HOM05D000068 ORTHO05D004908 2.8e-84 316.6 353 50.7
Pp3c14_15017 Physcomitrium patens HOM05D000068 ORTHO05D004908 2.9e-81 306.6 270 64.8
Cre17.g727650 Chlamydomonas reinhardtii HOM05D000068 ORTHO05D004908 3.2e-80 303.1 306 52.6
Haze_26871 Corylus avellana HOM05D000068 ORTHO05D004908 2.3e-78 297.0 305 49.8
Cfa024921 Carpinus fangiana HOM05D000068 ORTHO05D004908 1.6e-76 290.8 328 48.2
HPP92_001430 Vanilla planifolia HOM05D000068 ORTHO05D004908 2.1e-76 290.4 228 69.7
CAN.G369.4 Capsicum annuum HOM05D000068 ORTHO05D004908 2.0e-74 283.9 168 88.1
CDE12G0650 Ceratophyllum demersum HOM05D000068 ORTHO05D004908 6.0e-71 272.3 167 81.4
CSS0030031 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004908 8.7e-62 241.9 144 86.8
CARHR272070 Cardamine hirsuta HOM05D000068 ORTHO05D004908 1.4e-59 234.6 128 93.8
Haze_26598 Corylus avellana HOM05D000068 ORTHO05D004908 1.7e-54 217.6 291 40.5
PRCOL_00005100 Prasinoderma coloniale HOM05D000068 ORTHO05D004908 9.6e-53 211.8 302 40.7
Pp3c11_26620 Physcomitrium patens HOM05D000068 ORTHO05D004908 7.1e-40 169.1 298 35.6
Cre12.g561550 Chlamydomonas reinhardtii HOM05D000068 ORTHO05D004908 6.0e-39 166.0 321 33.0
Mapoly0001s0331 Marchantia polymorpha HOM05D000068 ORTHO05D004908 3.0e-38 163.7 298 34.9
CDE12G0761 Ceratophyllum demersum HOM05D000068 ORTHO05D004908 6.7e-38 162.5 168 53.6
CARHR236410 Cardamine hirsuta HOM05D000068 ORTHO05D004908 1.8e-35 154.5 99 78.8
MCO02G068 Micromonas commoda HOM05D000068 ORTHO05D004908 9.0e-35 152.1 271 35.4
Cre13.g604150 Chlamydomonas reinhardtii HOM05D000068 ORTHO05D004908 2.2e-33 147.5 279 36.6
Ah.14g086040 Amaranthus hybridus HOM05D000068 ORTHO05D004908 4.2e-32 143.3 364 32.7
SMO367G0160 Selaginella moellendorffii HOM05D000068 ORTHO05D004908 1.2e-31 141.7 209 39.7
PRCOL_00000746 Prasinoderma coloniale HOM05D000068 ORTHO05D004908 7.9e-31 139.0 294 35.4
Cre10.g443000 Chlamydomonas reinhardtii HOM05D000068 ORTHO05D004908 5.1e-30 136.3 219 36.1
Cfa022818 Carpinus fangiana HOM05D002116 ORTHO05D002438 4.2e-24 116.7 290 27.2
Lsat_1_v5_gn_7_64280 Lactuca sativa HOM05D014621 ORTHO05D015019 2.3e-22 110.9 74 73.0
CBR_g31918 Chara braunii HOM05D000068 ORTHO05D004908 1.9e-16 91.3 142 35.2
Cc07_g21410 Coffea canephora HOM05D000068 ORTHO05D004908 1.2e-15 88.6 59 72.9
Hund06693 Selenicereus undatus HOM05D000068 ORTHO05D004908 5.1e-14 83.2 48 85.4
CSS0036273 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004908 5.3e-11 73.2 97 47.4
CBR_g9022 Chara braunii HOM05D000068 ORTHO05D135628 1.2e-10 72.0 150 34.0
Cc04_g13470 Coffea canephora HOM05D000068 ORTHO05D154390 1.7e-09 68.2 53 69.8
Sp6g12100 Schrenkiella parvula HOM05D000068 ORTHO05D372237 4.0e-06 57.0 62 56.5


User provided reference genes

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