Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 0.0e+00 3030.0 1598 100.0
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 0.0e+00 2634.4 1619 88.1
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 0.0e+00 2631.7 1619 87.8
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 0.0e+00 2630.9 1620 87.5
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 0.0e+00 2605.1 1683 84.7
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 0.0e+00 2596.6 1689 84.1
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 0.0e+00 2335.1 1633 77.0
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 0.0e+00 2232.2 1636 74.4
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 0.0e+00 2150.2 1636 73.4
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 0.0e+00 2141.7 1673 71.8
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 0.0e+00 2132.1 1630 72.9
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 0.0e+00 2088.5 1640 70.8
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 0.0e+00 2057.0 1637 70.2
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 0.0e+00 1871.3 1638 64.7
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 0.0e+00 1510.4 1657 56.2
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 3.8e-270 936.0 1659 39.3
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 4.0e-264 916.0 1661 39.0
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 6.9e-256 888.6 1495 40.3
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 9.0e-256 888.3 1659 38.3
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 5.1e-251 872.5 1692 37.4
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 6.2e-241 839.0 1673 38.1
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.4e-237 827.8 1774 35.7
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 1.8e-235 820.8 1432 39.9
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 6.5e-230 802.4 1756 35.4
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.4e-227 794.7 1686 36.1
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 3.4e-223 780.0 1589 36.8
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.0e-222 778.5 1732 35.8
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 1.1e-221 775.0 1667 35.6
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 5.0e-214 749.6 1595 35.9
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 8.5e-214 748.8 1667 34.9
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 3.9e-211 740.0 1669 34.9
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 1.5e-210 738.0 1651 34.3
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 1.1e-208 731.9 1695 34.6
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 1.4e-208 731.5 1718 34.7
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 1.6e-207 728.0 1669 34.5
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 1.3e-206 724.9 1720 34.0
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 9.4e-205 718.8 1662 34.1
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 8.0e-204 715.7 1702 34.1
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 8.0e-204 715.7 1659 33.9
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 3.1e-200 703.7 1737 32.5
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 4.4e-194 683.3 1700 32.9
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 6.3e-193 679.5 1621 34.5
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 1.8e-192 677.9 1772 32.6
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 2.9e-190 670.6 1518 34.4
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 1.8e-187 661.4 1675 32.7
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 1.2e-186 658.7 1612 33.6
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 1.1e-184 652.1 1687 32.8
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 6.6e-182 642.9 1505 34.2
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 6.1e-180 636.3 1688 32.2
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.0e-179 635.6 1685 31.9
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 7.5e-178 629.4 1665 32.4
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 6.4e-177 626.3 1490 33.4
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 8.3e-177 625.9 1630 31.6
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 1.1e-176 625.5 1751 30.7
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 1.4e-176 625.2 1669 32.1
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 2.4e-176 624.4 1127 39.9
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 3.2e-176 624.0 1689 31.8
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 2.0e-175 621.3 1652 32.3
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 5.6e-173 613.2 1138 39.3
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 7.1e-168 596.3 1652 31.4
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 6.0e-167 593.2 1639 31.9
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 7.8e-167 592.8 1679 31.2
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.5e-165 588.6 1653 31.3
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.2e-164 585.5 1655 31.4
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 4.0e-163 580.5 1727 30.7
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 1.3e-161 575.5 1705 32.0
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 7.1e-160 569.7 1671 31.5
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.6e-159 568.5 1676 30.7
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.4e-154 550.8 1736 29.4
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.3e-149 534.3 1660 29.6
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 5.3e-147 526.9 1656 29.6
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 4.9e-145 520.4 793 44.6
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 8.7e-134 483.0 836 41.0
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 3.7e-132 477.6 1118 33.8
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 1.0e-126 459.5 740 42.4
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.6e-122 443.4 1230 31.3
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 1.3e-118 432.6 1673 27.9
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 5.1e-118 430.6 1657 28.0
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 6.7e-118 430.3 861 36.4
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 8.7e-118 429.9 1667 27.6
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 7.4e-117 426.8 1618 28.5
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 2.2e-116 425.2 1648 27.5
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 1.8e-115 422.2 1426 29.6
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 7.7e-114 416.8 1801 27.5
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 5.5e-112 410.6 1655 27.1
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 5.5e-112 410.6 1640 27.3
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 9.1e-107 393.3 1806 26.5
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 7.7e-106 390.2 1509 27.8
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 7.7e-106 390.2 991 32.8
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 4.7e-103 380.9 1581 27.1
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 3.1e-99 368.2 722 39.6
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 2.0e-98 365.5 664 37.0
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 4.5e-98 364.4 1433 27.5
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 1.3e-97 362.8 668 39.4
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 1.7e-92 345.9 1629 25.8
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 7.0e-91 340.5 695 36.8
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 9.1e-91 340.1 679 38.1
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 6.3e-84 317.4 631 35.2
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 1.9e-80 305.8 788 34.1
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 3.5e-74 285.0 815 30.8
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 1.1e-72 280.0 691 33.1
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.1e-62 245.4 517 36.6
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 2.1e-50 206.1 601 32.6
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 4.0e-46 191.8 450 30.9
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 6.4e-44 184.5 521 32.4
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 5.1e-41 174.9 770 26.5
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 1.5e-40 173.3 315 35.6
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 3.4e-37 162.2 601 28.8
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 9.3e-35 154.1 154 55.2
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 4.5e-29 135.2 225 35.1
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 1.1e-27 130.6 214 38.8
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 6.2e-23 114.8 228 33.3
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 5.3e-22 111.7 286 31.8
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 2.9e-20 105.9 592 24.7
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 1.9e-19 103.2 303 29.4
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 1.8e-17 96.7 505 23.2
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 5.5e-11 75.1 210 29.5
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 2.7e-10 72.8 198 29.8
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 3.9e-09 68.9 164 36.0
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 5.1e-09 68.6 159 34.0
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 3.3e-08 65.9 83 44.6
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.3e-08 65.9 83 44.6
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.3e-08 65.9 86 44.2
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.7e-08 65.1 82 43.9
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 8.2e-07 61.2 154 29.9
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 3.1e-06 59.3 79 43.0
AagrBONN_evm.TU.Sc2ySwM_117.1752 Anthoceros agrestis HOM05D005579 ORTHO05D006775 4.1e-06 58.9 209 29.2


User provided reference genes

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