Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 7.3e-204 713.8 385 100.0
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 5.3e-170 601.3 370 90.3
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 5.3e-170 601.3 370 90.3
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 5.3e-170 601.3 370 90.3
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 2.6e-169 599.0 370 90.0
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 1.0e-168 597.0 370 90.3
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 2.8e-163 578.9 370 87.0
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 4.1e-162 575.1 381 84.3
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 8.5e-160 567.4 394 80.7
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 7.9e-158 560.8 394 79.9
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 9.7e-156 553.9 394 78.9
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 5.3e-154 548.1 391 77.2
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 6.1e-142 508.1 372 75.3
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 3.8e-136 488.8 348 77.9
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 3.0e-133 479.2 409 68.2
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 1.0e-128 464.2 394 65.5
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 8.5e-128 461.1 394 65.2
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.5e-127 460.3 386 72.8
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 1.5e-127 460.3 394 64.5
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 2.7e-126 456.1 389 65.3
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 3.6e-126 455.7 394 65.2
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 4.7e-126 455.3 394 65.0
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 2.2e-123 446.4 394 62.4
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 3.1e-122 442.6 394 62.2
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 4.1e-122 442.2 388 62.4
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 7.0e-122 441.4 394 62.2
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 9.1e-122 441.0 394 63.2
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 2.7e-121 439.5 394 63.5
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 7.2e-119 431.4 467 55.0
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 1.4e-117 427.2 391 59.1
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 8.8e-117 424.5 394 60.7
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 2.2e-115 419.9 395 58.7
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 4.9e-115 418.7 389 59.1
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 8.3e-115 417.9 394 59.6
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 1.4e-114 417.2 389 58.6
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.6e-113 413.7 404 56.9
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 7.8e-113 411.4 394 59.9
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 2.9e-112 409.5 407 58.2
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 4.7e-110 402.1 452 53.5
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 6.1e-110 401.7 391 58.1
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.5e-108 397.1 394 58.6
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 2.6e-108 396.4 394 55.6
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 6.4e-107 391.7 365 58.1
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 1.1e-106 391.0 391 56.5
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 5.4e-106 388.7 394 57.6
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 9.2e-106 387.9 386 55.7
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 5.2e-101 372.1 391 55.8
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 2.6e-100 369.8 394 52.3
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 5.8e-100 368.6 394 52.5
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 3.7e-99 365.9 398 50.8
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 3.5e-97 359.4 394 53.3
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 6.0e-97 358.6 391 50.1
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.3e-96 357.5 363 54.5
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 2.3e-96 356.7 394 52.3
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 5.0e-96 355.5 394 52.5
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.1e-95 354.4 384 51.6
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 2.1e-94 350.1 391 50.6
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 6.2e-94 348.6 391 50.1
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 6.2e-94 348.6 391 48.8
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 7.5e-92 341.7 392 52.0
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 1.7e-91 340.5 390 51.8
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 2.4e-90 336.7 320 59.1
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 7.1e-90 335.1 394 51.3
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 1.2e-89 334.3 391 49.9
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 2.1e-89 333.6 320 57.5
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 2.7e-89 333.2 391 50.1
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 4.6e-89 332.4 324 57.7
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 3.0e-88 329.7 394 52.0
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 2.5e-87 326.6 327 55.4
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.6e-86 323.9 519 42.0
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 2.1e-86 323.6 338 55.6
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 2.4e-85 320.1 391 46.0
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 1.3e-83 314.3 394 48.7
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 1.7e-83 313.9 376 49.5
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 2.9e-83 313.2 320 55.3
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.5e-81 306.2 391 46.3
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 3.5e-81 306.2 392 48.7
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 3.2e-74 283.1 388 42.5
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 2.1e-73 280.4 366 44.3
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 2.5e-71 273.5 394 44.9
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.3e-71 273.1 400 42.5
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 1.2e-68 264.6 391 43.2
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 5.4e-66 255.8 333 48.0
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 4.6e-65 252.7 333 47.7
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 1.3e-64 251.1 333 47.4
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 9.6e-63 245.0 363 42.4
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 2.6e-60 236.9 333 41.1
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 1.9e-58 230.7 227 55.1
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.9e-51 206.1 206 53.4
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.9e-51 206.1 206 53.4
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 2.1e-49 200.7 389 38.0
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 3.5e-49 199.9 394 33.2
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 9.0e-45 185.3 232 46.1
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 1.6e-41 174.5 394 30.5
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 2.6e-36 157.1 130 65.4
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.7e-35 154.5 319 35.7
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 1.3e-30 138.3 141 51.8
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 9.4e-26 122.1 102 66.7
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 9.4e-26 122.1 102 66.7
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.4e-24 118.2 369 26.6
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 3.9e-24 116.7 386 24.6
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 6.3e-22 109.4 405 24.4
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.2e-20 105.1 383 24.8
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 6.5e-19 99.4 102 54.9
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 1.9e-18 97.8 102 53.9
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 2.8e-14 84.0 131 42.0
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 2.4e-13 80.9 59 72.9
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 4.1e-13 80.1 114 41.2
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.2e-12 78.6 90 50.0
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.0e-11 75.5 86 51.2
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 3.8e-11 73.6 63 63.5
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 8.5e-11 72.4 63 63.5
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 2.6e-07 60.8 102 44.1


User provided reference genes

Program Settings