Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 2337.4 1317 100.0
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 2241.1 1340 94.8
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 2236.1 1332 95.1
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 2235.7 1332 95.1
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 2235.7 1359 93.5
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 2227.6 1317 93.3
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 2171.7 1317 87.6
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 2153.3 1317 89.0
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 2149.8 1317 86.2
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 2137.8 1317 88.5
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 2071.6 1317 85.6
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1934.5 1343 78.3
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1875.9 1317 75.2
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1874.0 1317 76.2
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1837.8 1317 74.1
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1822.0 1303 74.3
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1794.2 1317 72.0
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1792.3 1317 71.9
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1775.8 1317 71.6
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1744.2 1317 70.7
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1743.8 1317 70.2
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1733.0 1317 71.5
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1729.1 1317 70.5
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1728.4 1317 69.4
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1726.8 1317 70.9
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1725.7 1317 69.1
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1718.0 1321 70.6
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1718.0 1365 68.4
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1713.4 1549 64.4
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1707.2 1317 69.2
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1705.6 1317 69.4
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1705.3 1317 68.9
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1696.4 1318 70.4
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1682.2 1317 67.7
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1677.5 1317 67.3
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1669.8 1317 67.4
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1661.0 1431 64.1
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1653.3 1317 68.3
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1652.9 1317 67.5
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1645.9 1317 67.7
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1642.9 1317 68.1
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1623.2 1311 67.3
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1614.4 1317 64.8
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1609.3 1370 63.7
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1609.3 1317 66.5
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1600.1 1317 65.5
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1597.4 1317 65.0
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1593.9 1317 66.1
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1588.9 1317 65.0
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1585.9 1318 64.8
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1583.5 1317 64.2
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1575.8 1210 69.3
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1574.3 1317 65.1
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1569.3 1210 68.8
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1567.4 1318 67.8
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1563.5 1325 63.3
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1562.0 1318 67.5
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1561.6 1318 67.5
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1544.6 1317 62.8
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1542.7 1317 64.0
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1534.6 1303 64.9
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1533.9 1317 64.8
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1532.3 1261 65.3
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1523.5 1337 62.5
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1507.7 1317 62.9
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1505.7 1317 62.5
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1504.2 1317 61.7
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1494.2 1254 64.7
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1491.9 1370 65.5
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1485.3 1401 59.7
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1484.9 1317 61.3
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1467.6 1303 60.2
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1457.6 1318 61.5
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1437.6 1317 59.8
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1418.3 1304 60.0
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1258.4 767 93.0
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1201.0 1317 51.9
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 0.0e+00 1182.9 743 84.5
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1133.6 1318 49.3
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 9.0e-312 1074.7 787 77.4
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 2.2e-308 1062.8 1062 54.6
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 3.5e-306 1055.4 1313 46.2
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 4.0e-278 962.2 1316 43.9
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.1e-274 949.9 1025 53.5
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 6.2e-271 938.3 1059 50.2
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 7.9e-266 921.4 888 57.8
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 1.0e-265 921.0 902 56.8
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.4e-262 909.8 759 63.8
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 3.3e-256 889.4 1252 46.3
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 1.4e-249 867.5 669 69.8
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 7.4e-248 861.7 1103 49.4
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 8.5e-244 848.2 761 60.2
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 3.0e-241 839.7 631 70.0
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 3.9e-241 839.3 631 69.9
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 3.8e-228 796.2 728 59.6
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.5e-224 781.9 631 67.2
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 8.0e-218 761.9 729 57.5
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.0e-209 734.9 594 65.8
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.0e-209 734.9 594 65.8
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.7e-207 727.6 558 70.3
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 3.2e-206 723.4 1282 38.1
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 9.2e-198 695.3 735 54.8
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 2.9e-183 647.1 593 61.7
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 9.6e-163 578.9 370 87.0
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.3e-162 578.6 1381 33.3
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 3.4e-152 543.9 350 80.0
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 2.2e-151 541.2 317 91.2
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 2.3e-148 531.2 436 66.7
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 8.7e-148 529.3 375 73.1
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.3e-143 515.4 524 56.5
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.3e-140 505.4 431 64.3
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.7e-135 488.4 296 83.8
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 5.0e-135 486.9 1367 30.9
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 1.6e-133 481.9 1339 30.6
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.1e-126 459.1 457 57.5
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.5e-118 432.2 222 96.4
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.6e-117 428.7 244 88.5
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 5.7e-115 420.2 1375 27.1
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 2.2e-114 418.3 264 81.8
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 5.0e-111 407.1 224 90.2
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 8.8e-108 396.4 853 35.9
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 4.0e-100 370.9 187 99.5
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.7e-96 358.2 408 51.7
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 2.6e-91 341.7 223 80.3
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 1.6e-72 279.3 227 63.0
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 2.2e-66 258.8 225 68.0
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.9e-63 248.1 126 96.0
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.6e-53 216.1 140 81.4
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 3.8e-50 204.9 139 79.1
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 3.7e-45 188.3 192 53.1
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 1.1e-44 186.8 170 59.4
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 4.8e-37 161.4 87 92.0
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.0e-34 153.7 106 76.4
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.2e-32 146.7 72 94.4
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 4.3e-30 138.3 151 53.0
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 8.2e-29 134.0 77 97.4
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 1.9e-25 122.9 114 57.0
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 1.8e-23 116.3 119 49.6
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.9e-22 112.8 100 63.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 9.7e-22 110.5 64 85.9
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 5.3e-20 104.8 64 78.1
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 2.6e-19 102.4 106 56.6
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 1.0e-15 90.5 141 44.7
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.7e-13 83.2 90 52.2
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 3.7e-13 82.0 53 73.6
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 5.0e-10 71.6 91 46.2
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 6.5e-10 71.2 147 34.0
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 4.2e-09 68.6 63 61.9
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 1.0e-07 63.9 61 62.3
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 1.4e-07 63.5 56 66.1
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 2.6e-06 59.3 33 87.9


User provided reference genes

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