Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 8.8e-102 373.6 190 100.0
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 1.1e-91 340.1 190 92.1
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 5.9e-90 334.3 190 90.0
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 5.9e-90 334.3 190 90.0
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 5.0e-89 331.3 190 88.9
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 2.5e-88 328.9 190 88.9
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 2.5e-88 328.9 190 88.9
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 7.3e-88 327.4 190 88.4
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 2.1e-87 325.9 188 87.8
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 1.8e-86 322.8 188 86.7
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 5.8e-85 317.8 188 86.2
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 1.4e-83 313.2 188 85.1
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 9.2e-83 310.5 185 85.9
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 4.3e-80 301.6 189 82.0
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 2.3e-78 295.8 189 79.4
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 2.6e-77 292.4 191 78.0
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 4.4e-77 291.6 188 78.7
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 7.5e-77 290.8 189 75.7
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 7.5e-77 290.8 189 75.7
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 1.3e-76 290.0 188 78.2
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 1.7e-76 289.7 189 77.2
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 2.2e-76 289.3 187 77.5
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 1.4e-75 286.6 190 77.4
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 3.2e-75 285.4 193 74.1
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 5.4e-75 284.6 190 74.2
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 5.4e-75 284.6 189 74.6
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 1.2e-74 283.5 189 75.7
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 1.6e-74 283.1 189 73.0
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 2.1e-74 282.7 190 74.2
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 2.7e-74 282.3 188 72.3
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 2.7e-74 282.3 189 75.7
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 4.6e-74 281.6 188 71.8
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 4.6e-74 281.6 189 75.1
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.0e-74 281.2 188 73.9
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.0e-74 281.2 188 73.9
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 6.0e-74 281.2 188 76.6
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 7.8e-74 280.8 188 76.6
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 1.0e-73 280.4 189 74.6
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 1.0e-73 280.4 188 74.5
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 1.0e-73 280.4 188 78.7
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.3e-73 280.0 188 73.4
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 3.0e-73 278.9 188 73.4
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 3.9e-73 278.5 167 86.8
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 5.1e-73 278.1 189 74.6
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 5.1e-73 278.1 188 74.5
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 6.6e-73 277.7 188 73.9
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 6.6e-73 277.7 188 73.9
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 8.6e-73 277.3 187 73.8
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 1.5e-72 276.6 189 73.5
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 1.9e-72 276.2 188 73.4
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.9e-72 276.2 188 74.5
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 3.3e-72 275.4 188 73.9
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 4.3e-72 275.0 190 72.6
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 4.3e-72 275.0 197 71.1
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 4.3e-72 275.0 190 71.6
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 7.3e-72 274.2 187 72.7
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 7.3e-72 274.2 186 74.7
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 1.2e-71 273.5 189 74.1
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 1.6e-71 273.1 187 72.2
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.6e-71 273.1 191 74.3
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 2.8e-71 272.3 189 73.0
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.8e-71 272.3 189 75.7
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 3.6e-71 271.9 190 71.6
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 4.7e-71 271.6 187 73.8
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 6.2e-71 271.2 186 73.1
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 8.1e-71 270.8 186 73.1
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 1.1e-70 270.4 187 73.8
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 1.8e-70 269.6 193 72.5
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 1.8e-70 269.6 181 74.0
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 3.1e-70 268.9 190 72.1
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 4.0e-70 268.5 188 69.7
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 8.9e-70 267.3 188 69.7
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 8.9e-70 267.3 186 71.0
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.2e-69 266.9 189 72.0
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 2.0e-69 266.2 186 72.6
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 4.4e-69 265.0 191 70.7
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 4.4e-69 265.0 190 71.6
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 5.8e-69 264.6 190 71.6
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 9.9e-69 263.8 190 70.5
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 1.3e-68 263.5 215 67.0
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 1.3e-68 263.5 188 72.9
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 1.3e-68 263.5 202 68.8
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 1.1e-67 260.4 190 70.5
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 2.4e-67 259.2 245 58.0
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 2.4e-67 259.2 245 58.0
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 3.2e-67 258.8 186 69.9
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 2.1e-66 256.1 177 71.2
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.1e-64 250.4 186 66.7
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 1.5e-61 240.0 183 65.6
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 3.4e-61 238.8 186 64.5
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 9.9e-61 237.3 160 76.2
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 1.5e-56 223.4 183 61.2
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 2.8e-55 219.2 148 75.0
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.6e-53 212.6 162 72.2
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 7.6e-53 211.1 189 63.5
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 1.3e-52 210.3 189 61.4
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.2e-52 209.5 188 61.2
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 1.5e-48 196.8 135 71.9
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 2.5e-48 196.1 250 49.6
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 1.2e-45 187.2 109 82.6
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 1.5e-45 186.8 136 67.6
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 3.4e-45 185.7 126 76.2
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 1.7e-44 183.3 109 83.5
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.7e-44 183.3 113 81.4
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 1.4e-43 180.3 141 66.7
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 5.1e-41 171.8 201 48.8
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 1.9e-40 169.9 130 66.2
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 1.6e-39 166.8 185 48.6
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 2.5e-35 152.9 85 87.1
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 1.3e-33 147.1 102 72.5
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 8.7e-33 144.4 105 63.8
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 5.7e-32 141.7 113 63.7
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 9.0e-30 134.4 130 53.8
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 4.6e-26 122.1 137 53.3
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 1.0e-25 120.9 138 55.1
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 6.3e-23 111.7 167 44.3
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 4.1e-22 109.0 200 37.0
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 5.9e-21 105.1 60 83.3
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.1e-14 82.8 77 61.0
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.2e-10 70.9 77 55.8
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 1.6e-10 70.5 109 41.3
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 1.0e-09 67.8 51 62.7
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 5.7e-08 62.0 51 56.9


User provided reference genes

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