Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00622 Brassica carinata HOM05D000227 ORTHO05D092615 5.1e-105 384.4 192 100.0
Prupe.7G133900 Prunus persica HOM05D000227 ORTHO05D004725 9.8e-16 87.8 81 59.3
Lalb_Chr09g0323161 Lupinus albus HOM05D000227 ORTHO05D004725 2.8e-15 86.3 80 58.8
Rhsim08G0100800 Rhododendron simsii HOM05D000227 ORTHO05D004725 1.1e-14 84.3 81 56.8
PSO541G6342 Papaver somniferum HOM05D000227 ORTHO05D004725 1.4e-14 84.0 81 54.3
PSO675G3845 Papaver somniferum HOM05D000227 ORTHO05D004725 1.4e-14 84.0 81 54.3
Glyma.18G101100 Glycine max HOM05D000227 ORTHO05D004725 1.8e-14 83.6 67 64.2
AUR62000553 Chenopodium quinoa HOM05D000227 ORTHO05D004725 2.4e-14 83.2 81 55.6
AUR62006905 Chenopodium quinoa HOM05D000227 ORTHO05D004725 2.4e-14 83.2 81 55.6
ECA248G3620 Erigeron canadensis HOM05D000227 ORTHO05D004725 4.1e-14 82.4 81 56.8
Glyma.18G100800 Glycine max HOM05D000227 ORTHO05D004725 5.4e-14 82.0 67 62.7
Os07g0618800 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D004725 2.0e-13 80.1 81 55.6
GSVIVG01038234001 Vitis vinifera HOM05D000227 ORTHO05D004725 2.0e-13 80.1 81 54.3
Eucgr.H01660 Eucalyptus grandis HOM05D000227 ORTHO05D004725 7.8e-13 78.2 81 50.6
EL10Ac4g09665 Beta vulgaris HOM05D000227 ORTHO05D004725 2.3e-12 76.6 81 53.1
HanXRQChr04g0096001 Helianthus annuus HOM05D000227 ORTHO05D004725 1.1e-11 74.3 81 50.6
Sp7g34750 Schrenkiella parvula HOM05D000227 ORTHO05D004725 1.1e-11 74.3 81 50.6
Zm00001eb327620 Zea mays HOM05D000227 ORTHO05D004725 1.1e-11 74.3 81 53.1
AT4G37010 Arabidopsis thaliana HOM05D000227 ORTHO05D004725 1.5e-11 73.9 81 49.4
Thhalv10026403m.g Eutrema salsugineum HOM05D000227 ORTHO05D004725 5.6e-11 72.0 81 48.1
Aqoxy5G01235 Aquilegia oxysepala HOM05D000227 ORTHO05D004725 7.3e-11 71.6 77 51.9
AL7G13780 Arabidopsis lyrata HOM05D000227 ORTHO05D004725 7.3e-11 71.6 81 48.1
Carub.0007s0321 Capsella rubella HOM05D000227 ORTHO05D004725 1.2e-10 70.9 81 48.1
arahy.Tifrunner.gnm1.ann1.5P73VR Arachis hypogaea HOM05D000227 ORTHO05D004725 2.1e-10 70.1 81 48.1
Lj4A148G20 Lonicera japonica HOM05D000227 ORTHO05D004725 2.8e-10 69.7 92 47.8
arahy.Tifrunner.gnm1.ann1.S3U133 Arachis hypogaea HOM05D000227 ORTHO05D004725 3.6e-10 69.3 81 53.1
BcaC09g50023 Brassica carinata HOM05D000227 ORTHO05D004725 3.6e-10 69.3 62 62.9
C01p29890 Brassica napus HOM05D000227 ORTHO05D004725 3.6e-10 69.3 62 62.9
BolC1t02931H Brassica oleracea HOM05D000227 ORTHO05D004725 3.6e-10 69.3 62 62.9
Psat1g058800 Pisum sativum HOM05D000227 ORTHO05D004725 1.4e-09 67.4 81 48.1
Medtr7g074020 Medicago truncatula HOM05D000227 ORTHO05D004725 1.8e-09 67.0 81 48.1
Lj2g0006728 Lotus japonicus HOM05D000227 ORTHO05D004725 3.1e-09 66.2 81 48.1
TPR.G2322 Trifolium pratense HOM05D004777 ORTHO05D006240 3.1e-09 66.2 81 48.1
Nn5g30315 Nelumbo nucifera HOM05D000227 ORTHO05D004725 4.0e-09 65.9 81 48.1
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 6.8e-09 65.1 50 68.0
QL06p041468 Quercus lobata HOM05D000227 ORTHO05D004725 6.8e-09 65.1 65 56.9
Aa31LG4G18590 Aethionema arabicum HOM05D000227 ORTHO05D004725 8.9e-09 64.7 62 59.7
Aa31LG6G13960 Aethionema arabicum HOM05D000227 ORTHO05D004725 8.9e-09 64.7 81 43.2
Medtr6g007613 Medicago truncatula HOM05D000227 ORTHO05D004725 8.9e-09 64.7 81 48.1
SGA_v2.0_scaffold12G06271 Striga asiatica HOM05D000227 ORTHO05D004725 8.9e-09 64.7 49 69.4
Peaxi162Scf00450g00419 Petunia axillaris HOM05D000227 ORTHO05D004725 1.2e-08 64.3 49 71.4
BcaB05g23213 Brassica carinata HOM05D000227 ORTHO05D004725 1.5e-08 63.9 62 59.7
A01p24180 Brassica napus HOM05D000227 ORTHO05D004725 1.5e-08 63.9 62 59.7
BraA01t02330Z Brassica rapa HOM05D000227 ORTHO05D004725 1.5e-08 63.9 62 59.7
Gohir.A10G092100 Gossypium hirsutum HOM05D000227 ORTHO05D004725 1.5e-08 63.9 50 66.0
Gohir.D10G096300 Gossypium hirsutum HOM05D000227 ORTHO05D004725 1.5e-08 63.9 50 66.0
Gorai.011G105500 Gossypium raimondii HOM05D000227 ORTHO05D004725 1.5e-08 63.9 50 66.0
Phvul.006G204800 Phaseolus vulgaris HOM05D000227 ORTHO05D004725 1.5e-08 63.9 81 48.1
Thhalv10008929m.g Eutrema salsugineum HOM05D000227 ORTHO05D004725 2.0e-08 63.5 34 94.1
FvH4_1g15980 Fragaria vesca HOM05D000227 ORTHO05D004725 2.0e-08 63.5 34 94.1
FAN19G1900 Fragaria x ananassa HOM05D000227 ORTHO05D004725 2.0e-08 63.5 34 94.1
FAN26G1743 Fragaria x ananassa HOM05D000227 ORTHO05D004725 2.0e-08 63.5 34 94.1
Rhsim09G0169200 Rhododendron simsii HOM05D000227 ORTHO05D004725 2.0e-08 63.5 52 63.5
RcHm_v2.0_Chr2g0105581 Rosa chinensis HOM05D000227 ORTHO05D004725 2.0e-08 63.5 34 94.1
Oeu063697.1 Olea europaea HOM05D000227 ORTHO05D004725 2.6e-08 63.2 66 54.5
AL5G30490 Arabidopsis lyrata HOM05D000227 ORTHO05D004725 3.4e-08 62.8 62 58.1
AT3G50360 Arabidopsis thaliana HOM05D000227 ORTHO05D004725 3.4e-08 62.8 62 58.1
Haze_15406 Corylus avellana HOM05D000227 ORTHO05D004725 3.4e-08 62.8 47 66.0
DCAR_025730 Daucus carota HOM05D000227 ORTHO05D004725 3.4e-08 62.8 49 65.3
Duzib147G0217 Durio zibethinus HOM05D000227 ORTHO05D004725 3.4e-08 62.8 50 66.0
Thecc.01G055300 Theobroma cacao HOM05D000227 ORTHO05D004725 3.4e-08 62.8 50 66.0
CiPaw.02G008600 Carya illinoinensis HOM05D000227 ORTHO05D004725 4.4e-08 62.4 50 66.0
Sp5g11820 Schrenkiella parvula HOM05D000227 ORTHO05D004725 4.4e-08 62.4 34 91.2
TAR628G0033 Trochodendron aralioides HOM05D000227 ORTHO05D004725 4.4e-08 62.4 34 91.2
Hma1.2p1_0461F.1_g157830 Hydrangea macrophylla HOM05D000227 ORTHO05D004725 5.8e-08 62.0 52 59.6
unitig_899.g14976 Utricularia gibba HOM05D000227 ORTHO05D004725 5.8e-08 62.0 50 64.0
CSS0046781 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 7.5e-08 61.6 50 64.0
CAN.G660.4 Capsicum annuum HOM05D000227 ORTHO05D004725 7.5e-08 61.6 49 71.4
DCAR_010897 Daucus carota HOM05D000227 ORTHO05D004725 7.5e-08 61.6 81 46.9
Dinv28254 Davidia involucrata HOM05D000227 ORTHO05D004725 7.5e-08 61.6 50 64.0
Duzib187G0456 Durio zibethinus HOM05D000227 ORTHO05D004725 7.5e-08 61.6 50 64.0
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 7.5e-08 61.6 34 91.2
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 7.5e-08 61.6 34 91.2
Manes.13G124900 Manihot esculenta HOM05D000227 ORTHO05D004725 7.5e-08 61.6 34 91.2
CSS0005844 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 9.8e-08 61.2 34 91.2
CSS0018662 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 9.8e-08 61.2 34 91.2
CSS0041531 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004725 9.8e-08 61.2 34 91.2
CARHR159830 Cardamine hirsuta HOM05D000227 ORTHO05D004725 9.8e-08 61.2 61 57.4
Ciclev10026635m.g Citrus clementina HOM05D000227 ORTHO05D004725 9.8e-08 61.2 50 62.0
ECA248G2825 Erigeron canadensis HOM05D000227 ORTHO05D004725 9.8e-08 61.2 34 91.2
HanXRQChr01g0009261 Helianthus annuus HOM05D000227 ORTHO05D004725 9.8e-08 61.2 34 91.2
HanXRQChr13g0392961 Helianthus annuus HOM05D000227 ORTHO05D004725 9.8e-08 61.2 34 91.2
MD02G1171500 Malus domestica HOM05D000227 ORTHO05D004725 9.8e-08 61.2 34 91.2
MD15G1283300 Malus domestica HOM05D000227 ORTHO05D004725 9.8e-08 61.2 34 91.2
Oeu032226.1 Olea europaea HOM05D000227 ORTHO05D004725 9.8e-08 61.2 34 91.2
Peaxi162Scf00577g00213 Petunia axillaris HOM05D000227 ORTHO05D004725 9.8e-08 61.2 54 59.3
PGR102G1883 Punica granatum HOM05D000227 ORTHO05D004725 9.8e-08 61.2 34 91.2
vmacro17950 Vaccinium macrocarpon HOM05D000227 ORTHO05D004725 9.8e-08 61.2 34 91.2
arahy.Tifrunner.gnm1.ann1.4YMZ2P Arachis hypogaea HOM05D001031 ORTHO05D000857 1.3e-07 60.8 53 60.4
arahy.Tifrunner.gnm1.ann1.6JR7QB Arachis hypogaea HOM05D000227 ORTHO05D004725 1.3e-07 60.8 53 60.4
CAN.G7.22 Capsicum annuum HOM05D000227 ORTHO05D004725 1.3e-07 60.8 54 59.3
Potri.005G138000 Populus trichocarpa HOM05D000227 ORTHO05D004725 1.3e-07 60.8 51 60.8
Sc09g0002180 Simmondsia chinensis HOM05D000227 ORTHO05D004725 1.3e-07 60.8 52 57.7
Atru.chr3.338 Acer truncatum HOM05D000227 ORTHO05D004725 1.7e-07 60.5 34 88.2
Dinv16573 Davidia involucrata HOM05D000227 ORTHO05D004725 1.7e-07 60.5 50 62.0
Gohir.D03G022050 Gossypium hirsutum HOM05D000227 ORTHO05D004725 1.7e-07 60.5 34 88.2
Gorai.003G023300 Gossypium raimondii HOM05D000227 ORTHO05D004725 1.7e-07 60.5 34 88.2
Manes.12G101100 Manihot esculenta HOM05D000227 ORTHO05D004725 1.7e-07 60.5 34 88.2
Nitab4.5_0002016g0050 Nicotiana tabacum HOM05D000227 ORTHO05D004725 1.7e-07 60.5 34 88.2
Nitab4.5_0009939g0030 Nicotiana tabacum HOM05D000227 ORTHO05D004725 1.7e-07 60.5 34 88.2
TWI09G1594 Tripterygium wilfordii HOM05D000227 ORTHO05D004725 1.7e-07 60.5 34 88.2
CANSAT01G0976 Cannabis sativa HOM05D000227 ORTHO05D004725 2.2e-07 60.1 34 88.2
Gohir.D11G198550 Gossypium hirsutum HOM05D000227 ORTHO05D004725 2.2e-07 60.1 33 90.9
Sabra05G0112700 Salix brachista HOM05D000227 ORTHO05D004725 2.2e-07 60.1 34 88.2
Actinidia36495 Actinidia chinensis HOM05D002093 ORTHO05D003877 2.9e-07 59.7 97 41.2
Solyc04g026350.3 Solanum lycopersicum HOM05D000227 ORTHO05D004725 2.9e-07 59.7 53 60.4
Sopen04g015290 Solanum pennellii HOM05D000227 ORTHO05D004725 2.9e-07 59.7 53 60.4
Solyc02g090810.4 Solanum lycopersicum HOM05D000227 ORTHO05D004725 3.7e-07 59.3 34 88.2
Sopen02g035440 Solanum pennellii HOM05D000227 ORTHO05D004725 3.7e-07 59.3 34 88.2
PGSC0003DMG402004023 Solanum tuberosum HOM05D000227 ORTHO05D004725 3.7e-07 59.3 34 88.2
Carub.0005s1667 Capsella rubella HOM05D000227 ORTHO05D004725 4.9e-07 58.9 34 88.2
Ca_24773_v3 Cicer arietinum L. HOM05D000227 ORTHO05D004725 4.9e-07 58.9 34 88.2
SalBow8G3918 Salvia bowleyana HOM05D000227 ORTHO05D004725 4.9e-07 58.9 126 36.5
Hund07211 Selenicereus undatus HOM05D000227 ORTHO05D004725 4.9e-07 58.9 34 85.3
THA.LOC104821257 Tarenaya hassleriana HOM05D000227 ORTHO05D004725 4.9e-07 58.9 34 85.3
arahy.Tifrunner.gnm1.ann1.SNW2XV Arachis hypogaea HOM05D000227 ORTHO05D004725 6.4e-07 58.5 47 63.8
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 6.4e-07 58.5 81 40.7
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 6.4e-07 58.5 81 40.7
Hund21792 Selenicereus undatus HOM05D000227 ORTHO05D004725 6.4e-07 58.5 34 85.3
Glyma.08G177600 Glycine max HOM05D000227 ORTHO05D004725 8.3e-07 58.2 35 82.9
Glyma.15G055100 Glycine max HOM05D000227 ORTHO05D004725 8.3e-07 58.2 35 82.9
Nitab4.5_0009710g0010 Nicotiana tabacum HOM05D000227 ORTHO05D004725 8.3e-07 58.2 50 62.0
Psat3g117320 Pisum sativum HOM05D000227 ORTHO05D004725 8.3e-07 58.2 34 88.2
ClCG02G012810 Citrullus lanatus HOM05D000227 ORTHO05D004725 1.1e-06 57.8 34 85.3
MELO3C020899.2 Cucumis melo HOM05D000227 ORTHO05D004725 1.1e-06 57.8 34 85.3
CsaV3_2G016880 Cucumis sativus L. HOM05D000227 ORTHO05D004725 1.1e-06 57.8 34 85.3
Lsat_1_v5_gn_5_159601 Lactuca sativa HOM05D001318 ORTHO05D001152 1.1e-06 57.8 62 53.2
TPR.G24339 Trifolium pratense HOM05D000227 ORTHO05D004725 1.1e-06 57.8 34 85.3
MSTRG.23234 Avicennia marina HOM05D000227 ORTHO05D004725 1.4e-06 57.4 50 60.0
Cpa.g.sc55.154 Carica papaya HOM05D000227 ORTHO05D004725 1.9e-06 57.0 34 85.3
CDE04G0771 Ceratophyllum demersum HOM05D000227 ORTHO05D004725 1.9e-06 57.0 34 85.3
Cc00_g00950 Coffea canephora HOM05D000227 ORTHO05D004725 2.4e-06 56.6 34 82.4
GSVIVG01022137001 Vitis vinifera HOM05D000227 ORTHO05D004725 2.4e-06 56.6 34 82.4
HanXRQChr01g0009251 Helianthus annuus HOM05D000227 ORTHO05D004725 4.1e-06 55.8 67 47.8
Sed0022474 Sechium edule HOM05D000227 ORTHO05D004725 4.1e-06 55.8 34 82.4
Oeu046362.1 Olea europaea HOM05D000227 ORTHO05D004725 5.4e-06 55.5 74 43.2
ATR1102G007 Amborella trichopoda HOM05D000227 ORTHO05D004725 7.0e-06 55.1 45 62.2


User provided reference genes

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