Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 4.4e-95 351.3 176 100.0
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 2.3e-59 232.6 122 94.3
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.9e-59 232.3 122 93.4
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 5.0e-59 231.5 122 92.6
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 6.6e-59 231.1 122 93.4
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.1e-58 230.3 122 91.8
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 1.1e-58 230.3 122 92.6
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 1.5e-58 229.9 122 92.6
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.5e-58 229.2 163 73.6
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 2.5e-58 229.2 120 93.3
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.5e-58 229.2 122 92.6
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.5e-58 229.2 122 92.6
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.3e-58 228.8 122 91.8
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.3e-58 228.4 122 91.0
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 4.3e-58 228.4 122 91.0
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 4.3e-58 228.4 122 91.0
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.6e-58 228.0 122 91.8
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 5.6e-58 228.0 122 91.0
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 5.6e-58 228.0 121 90.9
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 7.3e-58 227.6 122 91.8
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 9.5e-58 227.3 122 90.2
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 9.5e-58 227.3 122 90.2
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.2e-57 226.9 122 91.0
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.6e-57 226.5 122 91.8
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 1.6e-57 226.5 122 91.0
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.8e-57 225.7 122 90.2
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 2.8e-57 225.7 122 90.2
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 2.8e-57 225.7 122 91.0
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 2.8e-57 225.7 122 89.3
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 3.6e-57 225.3 122 91.0
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 4.7e-57 224.9 122 88.5
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 6.1e-57 224.6 122 91.0
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 6.1e-57 224.6 122 89.3
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 8.0e-57 224.2 122 90.2
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 8.0e-57 224.2 122 89.3
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 1.0e-56 223.8 120 89.2
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.0e-56 223.8 122 89.3
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 1.4e-56 223.4 122 89.3
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 1.4e-56 223.4 122 88.5
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.4e-56 223.4 122 88.5
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.4e-56 223.4 122 88.5
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.4e-56 223.4 122 88.5
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 1.4e-56 223.4 122 88.5
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.4e-56 223.4 122 89.3
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 1.8e-56 223.0 122 89.3
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.8e-56 223.0 122 89.3
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 1.8e-56 223.0 122 90.2
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 1.8e-56 223.0 122 90.2
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.8e-56 223.0 122 89.3
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 2.3e-56 222.6 122 88.5
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 2.3e-56 222.6 122 88.5
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 2.3e-56 222.6 122 88.5
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 3.0e-56 222.2 122 87.7
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 3.0e-56 222.2 122 87.7
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 3.0e-56 222.2 122 87.7
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 5.2e-56 221.5 122 88.5
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 5.2e-56 221.5 122 88.5
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 6.8e-56 221.1 122 86.9
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 6.8e-56 221.1 122 88.5
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 6.8e-56 221.1 122 87.7
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.8e-56 221.1 122 87.7
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.8e-56 221.1 122 87.7
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 6.8e-56 221.1 122 87.7
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 8.9e-56 220.7 123 87.0
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 8.9e-56 220.7 122 88.5
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 1.2e-55 220.3 122 86.9
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.5e-55 219.9 122 88.5
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 1.5e-55 219.9 122 87.7
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 1.5e-55 219.9 122 87.7
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.5e-55 219.9 122 87.7
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 1.5e-55 219.9 122 87.7
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.5e-55 219.9 122 87.7
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.5e-55 219.9 122 87.7
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.5e-55 219.9 122 86.9
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.5e-55 219.9 121 89.3
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 1.5e-55 219.9 122 86.9
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 1.5e-55 219.9 122 86.9
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.5e-55 219.9 122 88.5
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 2.0e-55 219.5 122 86.9
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 2.0e-55 219.5 122 87.7
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.0e-55 219.5 122 86.9
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.0e-55 219.5 122 86.9
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 2.6e-55 219.2 122 89.3
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 2.6e-55 219.2 122 86.9
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 3.4e-55 218.8 122 86.1
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 3.4e-55 218.8 122 86.1
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 3.4e-55 218.8 122 86.9
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 3.4e-55 218.8 122 86.9
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 3.4e-55 218.8 122 87.7
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 4.4e-55 218.4 122 86.9
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 4.4e-55 218.4 122 87.7
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 4.4e-55 218.4 122 87.7
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 9.8e-55 217.2 120 88.3
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 9.8e-55 217.2 122 86.1
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.3e-54 216.9 122 86.9
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.7e-54 216.5 121 86.8
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 1.7e-54 216.5 122 86.9
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.7e-54 216.5 122 86.9
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 2.2e-54 216.1 121 86.8
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 2.2e-54 216.1 121 85.1
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 2.9e-54 215.7 116 89.7
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 6.4e-54 214.5 122 84.4
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 8.3e-54 214.2 122 86.1
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 4.1e-53 211.8 122 84.4
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 7.0e-53 211.1 122 82.0
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 5.9e-52 208.0 122 83.6
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.0e-51 207.2 129 81.4
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 1.0e-51 207.2 122 80.3
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 1.0e-51 207.2 110 90.9
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 2.1e-49 199.5 121 77.7
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 2.1e-49 199.5 108 88.9
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 1.8e-48 196.4 109 88.1
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 4.4e-47 191.8 163 65.0
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 2.2e-46 189.5 120 73.3
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.4e-45 186.0 100 88.0
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 4.6e-44 181.8 121 70.2
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 6.6e-43 177.9 121 65.3
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.5e-42 176.8 131 72.5
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 8.9e-40 167.5 122 70.5
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 1.5e-39 166.8 122 73.0
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 2.6e-39 166.0 87 89.7
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 1.3e-38 163.7 104 77.9
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 1.7e-38 163.3 104 76.9
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 6.2e-33 144.8 78 93.6
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.4e-31 139.0 82 84.1
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 6.4e-30 134.8 75 90.7
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 1.1e-29 134.0 116 61.2
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.3e-27 127.1 99 66.7
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 8.7e-27 124.4 71 87.3
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 6.2e-25 118.2 59 91.5
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.1e-21 107.5 77 72.7
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.9e-19 99.0 49 89.8
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.1e-18 97.4 111 40.5
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.1e-16 90.9 47 89.4
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 2.6e-15 86.3 45 84.4
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 2.6e-15 86.3 45 84.4
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 2.6e-15 86.3 45 84.4
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 4.5e-15 85.5 49 81.6
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 3.8e-14 82.4 92 52.2
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.2e-12 77.4 47 78.7
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.7e-09 65.9 42 69.0
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 1.4e-08 63.9 43 67.4


User provided reference genes

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