Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 3.2e-107 391.7 194 100.0
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 2.7e-98 362.1 194 89.2
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 1.0e-97 360.1 194 88.7
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 3.9e-97 358.2 194 88.1
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 3.9e-97 358.2 194 88.1
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 3.9e-97 358.2 194 88.1
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 1.5e-96 356.3 194 88.1
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 1.9e-96 355.9 194 88.1
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 4.3e-96 354.8 194 87.6
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 5.7e-96 354.4 193 87.6
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.6e-95 352.8 194 87.1
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 2.8e-95 352.1 194 86.1
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 3.7e-95 351.7 194 85.1
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 6.3e-95 350.9 194 86.1
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 8.2e-95 350.5 194 86.1
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 85.6
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 1.8e-94 349.4 194 85.1
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 85.1
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 84.0
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.6
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.6
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.6
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 5.3e-94 347.8 194 85.6
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 84.0
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 1.5e-93 346.3 194 84.5
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 1.5e-93 346.3 194 85.6
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 1.5e-93 346.3 194 85.1
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 2.0e-93 345.9 194 84.5
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 4.5e-93 344.7 194 84.0
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 84.0
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 83.5
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 2.2e-92 342.4 194 85.1
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 82.5
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 84.0
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 5.0e-92 341.3 194 83.0
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 6.5e-92 340.9 194 84.5
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 8.5e-92 340.5 194 83.0
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 1.1e-91 340.1 194 85.1
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 1.1e-91 340.1 194 83.5
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.4e-91 339.7 194 82.0
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 82.5
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 3.2e-91 338.6 194 82.0
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 5.5e-91 337.8 194 81.4
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 9.4e-91 337.0 200 80.0
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 1.2e-90 336.7 194 80.4
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.6e-90 336.3 194 81.4
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 2.1e-90 335.9 194 82.5
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.7e-90 335.5 194 83.0
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 2.7e-90 335.5 194 81.4
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 2.7e-90 335.5 194 82.5
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 2.7e-90 335.5 194 82.5
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 82.5
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 82.5
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.4e-89 333.2 194 82.0
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 1.4e-89 333.2 194 81.4
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.4e-89 333.2 194 82.0
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 80.9
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 80.9
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 2.3e-89 332.4 195 82.1
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 3.0e-89 332.0 194 79.9
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 5.1e-89 331.3 187 83.4
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 8.8e-89 330.5 194 80.4
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 8.8e-89 330.5 194 80.4
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 78.9
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 1.5e-88 329.7 214 75.2
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 79.4
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 2.0e-88 329.3 194 80.4
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 79.9
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 3.3e-88 328.6 235 69.8
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 5.7e-88 327.8 225 73.8
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 79.9
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 79.9
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 79.9
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 78.9
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 79.9
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 8.2e-87 323.9 194 79.4
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.1e-86 323.6 210 73.8
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 5.3e-86 321.2 194 77.3
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 9.1e-86 320.5 214 72.4
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 2.0e-85 319.3 214 72.4
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 5.9e-85 317.8 178 83.1
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 5.9e-85 317.8 194 76.3
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 5.9e-85 317.8 194 77.3
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 5.9e-85 317.8 194 77.8
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.0e-84 317.0 174 86.2
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 2.9e-84 315.5 188 79.3
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 3.8e-84 315.1 194 76.3
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 1.9e-83 312.8 187 78.1
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 2.1e-82 309.3 193 76.7
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.8e-81 306.2 176 82.4
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.0e-81 305.4 194 77.3
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 5.1e-81 304.7 194 74.7
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 8.8e-81 303.9 297 54.9
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 1.5e-80 303.1 194 76.3
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 9.7e-80 300.4 194 70.1
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 1.3e-79 300.1 210 70.5
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.8e-79 298.9 194 70.6
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 2.4e-78 295.8 161 87.0
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 5.3e-78 294.7 194 70.6
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 9.1e-78 293.9 195 69.2
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.2e-77 293.5 194 68.6
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 3.2e-75 285.4 274 57.3
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 4.0e-73 278.5 162 82.1
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.1e-72 276.9 160 81.2
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 9.7e-72 273.9 283 54.1
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 5.3e-70 268.1 172 70.9
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.6e-58 229.9 120 89.2
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 2.1e-58 229.6 137 79.6
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 8.0e-58 227.6 120 88.3
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 9.8e-56 220.7 178 59.6
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 4.1e-54 215.3 134 76.1
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 4.3e-51 205.3 130 73.1
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 8.0e-50 201.1 123 75.6
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 2.3e-49 199.5 123 74.8
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 8.9e-49 197.6 191 50.8
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 1.2e-45 187.2 114 78.9
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.0e-45 186.4 114 78.9
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 2.1e-42 176.4 112 73.2
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 1.8e-41 173.3 122 67.2
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 4.4e-40 168.7 99 78.8
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 4.9e-39 165.2 93 82.8
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 2.4e-38 162.9 173 48.0
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 1.4e-33 147.1 89 78.7
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 2.3e-33 146.4 186 40.9
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 9.8e-32 141.0 76 84.2
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 4.9e-31 138.7 73 86.3
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.9e-30 136.7 71 85.9
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 1.2e-29 134.0 88 73.9
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 1.2e-29 134.0 88 73.9
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 1.3e-28 130.6 73 80.8
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 1.3e-28 130.6 73 80.8
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 1.3e-28 130.6 73 80.8
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 3.3e-27 125.9 64 89.1
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.5e-19 100.5 74 67.6
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.8e-18 96.3 59 79.7
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.3e-15 87.4 55 80.0
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 5.4e-14 82.0 90 50.0
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.2e-13 80.9 83 54.2
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.2e-13 80.9 83 54.2
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 7.3e-11 71.6 93 45.2
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 2.8e-10 69.7 40 80.0
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 1.1e-09 67.8 56 58.9


User provided reference genes

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