Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 0.0e+00 2578.9 1297 100.0
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 0.0e+00 1814.7 1280 73.1
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1681.4 1285 68.4
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1670.6 1282 67.4
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1670.6 1289 67.2
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1656.7 1291 66.3
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1653.3 1274 67.3
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1650.2 1280 68.0
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1640.6 1288 67.0
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1631.7 1285 66.4
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1627.1 1320 65.6
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1622.1 1288 66.5
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1617.1 1279 66.5
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1605.5 1279 66.6
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1603.6 1270 66.2
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1602.8 1280 66.6
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1602.4 1275 66.0
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1595.9 1284 65.2
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1593.2 1270 66.5
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1591.6 1295 64.9
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1590.9 1282 65.4
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1589.3 1282 65.7
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1588.9 1281 65.7
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1587.4 1282 65.2
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1586.6 1282 65.1
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1576.6 1282 64.6
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1571.2 1294 63.3
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1569.7 1304 64.0
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1569.7 1304 64.4
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1565.1 1269 64.9
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1558.9 1282 64.6
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1558.5 1282 64.5
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1552.3 1281 64.5
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1543.5 1295 62.2
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1532.7 1296 62.1
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1525.4 1279 63.5
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1506.9 1288 62.1
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1506.5 1277 62.8
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1501.9 1297 62.1
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1497.3 1185 66.3
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1497.3 1280 61.6
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1493.4 1300 60.8
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1492.2 1294 60.6
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1489.6 1277 62.3
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1488.0 1286 61.4
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1488.0 1277 62.0
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1488.0 1287 61.5
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1488.0 1296 61.7
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1484.5 1268 61.8
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1483.0 1287 61.8
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1481.1 1314 61.0
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1476.8 1293 60.8
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1459.9 1268 61.4
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 0.0e+00 1459.1 1314 58.8
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1454.9 1295 59.6
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 0.0e+00 1452.2 1256 61.6
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1451.8 1279 60.6
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1449.5 1269 60.4
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 0.0e+00 1444.9 1283 61.3
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1444.5 1279 59.4
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1441.4 1281 59.4
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1439.5 1279 59.1
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1431.4 1281 59.6
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1420.2 1244 61.7
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1415.6 1300 58.4
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1413.3 1281 58.5
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1409.0 1273 60.6
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1408.7 1277 58.4
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 0.0e+00 1402.5 1261 58.6
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1402.1 1273 60.6
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 0.0e+00 1401.0 1258 59.1
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 0.0e+00 1397.5 1254 58.8
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1395.2 1273 60.3
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 0.0e+00 1385.5 1257 58.6
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1383.2 1282 57.7
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1375.9 1291 57.9
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1371.7 1293 57.5
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 0.0e+00 1369.4 1288 57.1
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1367.8 1276 57.3
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 0.0e+00 1365.9 1288 57.8
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 0.0e+00 1361.3 1287 57.0
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 0.0e+00 1357.8 1292 57.0
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1352.4 1286 56.0
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 0.0e+00 1352.0 1289 55.8
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1347.4 1279 56.8
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 0.0e+00 1343.2 1278 57.0
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1342.4 1279 56.7
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1340.9 1279 56.6
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1339.7 1279 56.7
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 0.0e+00 1338.9 1303 55.5
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1338.2 1303 55.4
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1337.0 1273 57.7
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1322.0 1271 57.3
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1320.4 1276 55.3
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1319.7 1251 56.8
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1316.2 1355 54.5
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1312.0 1303 55.0
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1311.2 1280 55.5
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 0.0e+00 1302.7 1288 55.3
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1302.0 1369 53.1
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 0.0e+00 1292.7 1300 54.5
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1287.3 1319 53.7
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1271.5 1251 55.5
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1270.0 1233 55.6
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1260.7 1233 55.2
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 0.0e+00 1260.7 1233 55.2
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1258.0 1233 55.2
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1244.2 1286 53.4
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1201.4 1284 52.1
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 0.0e+00 1177.2 1289 50.2
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 0.0e+00 1139.4 1332 49.2
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 0.0e+00 1137.5 851 67.7
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 8.5e-305 1050.8 1319 46.5
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 7.0e-283 978.0 1267 46.7
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 6.5e-281 971.5 864 59.4
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 3.2e-280 969.1 862 58.9
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.3e-278 963.0 859 58.3
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.0e-270 937.6 904 58.0
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.5e-256 890.6 906 56.3
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 4.3e-240 835.9 1300 39.2
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 4.3e-240 835.9 1290 39.3
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 4.7e-239 832.4 856 53.7
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.1e-235 821.2 1341 38.3
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 7.1e-235 818.5 1372 37.8
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.6e-231 806.2 1268 41.2
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.8e-228 796.2 1275 38.3
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 6.4e-228 795.4 1230 42.1
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.4e-227 794.3 1301 37.6
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.9e-224 783.9 1338 36.5
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 7.1e-219 765.4 934 48.8
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.3e-216 756.1 1276 36.9
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 2.2e-191 674.1 500 70.4
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 1.5e-189 667.9 828 45.7
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 2.2e-175 620.9 1496 31.5
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 7.0e-166 589.3 619 51.7
GSVIVG01034167001 Vitis vinifera HOM05D003688 ORTHO05D004338 5.6e-155 553.1 394 70.3
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 6.2e-146 523.1 416 67.1
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 8.0e-146 522.7 866 41.3
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 6.6e-140 503.1 1251 32.8
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 3.7e-135 487.3 430 62.3
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.3e-132 478.8 416 61.8
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 8.9e-129 466.1 424 59.7
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.2e-128 465.7 441 58.5
BcaB01g06223 Brassica carinata HOM05D003688 ORTHO05D004338 4.4e-128 463.8 372 61.3
Oeu033326.1 Olea europaea HOM05D003688 ORTHO05D004338 1.0e-124 452.6 303 73.3
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 7.6e-120 436.4 569 49.0
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 1.1e-118 432.6 448 54.2
Oeu036137.1 Olea europaea HOM05D003688 ORTHO05D004338 1.9e-115 421.8 294 69.7
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.5e-115 421.4 437 54.7
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 6.0e-109 400.2 432 53.9
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 1.5e-104 385.6 371 58.2
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 1.3e-100 372.5 373 54.7
CDE04G0526 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 5.6e-99 367.1 344 54.1
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 3.4e-80 304.7 1099 27.6
CAN.G325.1 Capsicum annuum HOM05D003688 ORTHO05D004338 1.7e-50 206.1 156 69.2
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 2.4e-49 202.2 221 48.0
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.0e-48 199.1 1136 22.9
Pp3c22_8160 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.8e-45 188.7 244 42.6
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 6.1e-45 187.6 1172 21.5
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.0e-43 182.6 1176 22.9
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 6.3e-42 177.6 1134 23.4
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.7e-40 172.2 951 22.8
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.7e-40 172.2 1148 22.4
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.3e-39 169.9 1144 21.5
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.7e-31 142.9 233 38.2
GSVIVG01023054001 Vitis vinifera HOM05D003688 ORTHO05D004338 1.1e-28 133.7 82 70.7
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 1.9e-25 122.9 192 44.8
Psat5g038080 Pisum sativum HOM05D001700 ORTHO05D016448 8.1e-21 107.5 216 35.2
vmacro07102 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 8.3e-18 97.4 78 64.1
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 1.9e-17 96.3 89 44.9
Cfa025161 Carpinus fangiana HOM05D003688 ORTHO05D004338 6.2e-13 81.3 522 23.2
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 8.9e-12 77.4 80 41.2


User provided reference genes

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