Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1282 Acer truncatum HOM05D003404 ORTHO05D004052 9.3e-37 156.4 80 100.0
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 3.6e-28 127.9 75 85.3
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 1.0e-27 126.3 75 82.7
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 1.8e-27 125.6 75 82.7
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.8e-27 125.6 75 82.7
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.8e-27 125.6 75 82.7
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 1.8e-27 125.6 75 82.7
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 1.8e-27 125.6 75 82.7
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 2.3e-27 125.2 75 81.3
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 3.0e-27 124.8 75 82.7
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 3.0e-27 124.8 75 82.7
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 3.0e-27 124.8 73 83.6
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 3.9e-27 124.4 73 84.9
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 3.9e-27 124.4 75 82.7
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 5.1e-27 124.0 73 83.6
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 5.1e-27 124.0 73 83.6
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 5.1e-27 124.0 73 84.9
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 5.1e-27 124.0 73 84.9
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 6.7e-27 123.6 75 82.7
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 6.7e-27 123.6 73 84.9
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 6.7e-27 123.6 73 80.8
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 8.8e-27 123.2 75 81.3
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 8.8e-27 123.2 73 82.2
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 8.8e-27 123.2 73 82.2
Zm00001eb178910 Zea mays HOM05D003404 ORTHO05D004052 8.8e-27 123.2 73 82.2
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 8.8e-27 123.2 73 82.2
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 1.1e-26 122.9 75 81.3
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 1.1e-26 122.9 75 81.3
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 1.1e-26 122.9 75 82.7
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 1.1e-26 122.9 75 82.7
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 1.1e-26 122.9 75 82.7
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 1.1e-26 122.9 75 81.3
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 1.1e-26 122.9 75 82.7
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 1.5e-26 122.5 73 84.9
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 1.5e-26 122.5 73 84.9
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 2.0e-26 122.1 73 83.6
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 2.0e-26 122.1 73 79.5
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 3.3e-26 121.3 75 80.0
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 4.3e-26 120.9 75 78.7
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 4.3e-26 120.9 75 78.7
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 4.3e-26 120.9 73 83.6
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 4.3e-26 120.9 73 82.2
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 5.7e-26 120.6 73 80.8
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 5.7e-26 120.6 73 80.8
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 5.7e-26 120.6 73 80.8
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 5.7e-26 120.6 73 80.8
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 5.7e-26 120.6 73 80.8
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 5.7e-26 120.6 73 80.8
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 5.7e-26 120.6 73 80.8
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 5.7e-26 120.6 75 80.0
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 7.4e-26 120.2 73 79.5
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 7.4e-26 120.2 73 80.8
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 7.4e-26 120.2 75 77.3
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 1.3e-25 119.4 73 79.5
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 1.3e-25 119.4 73 82.2
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 1.3e-25 119.4 73 82.2
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.3e-25 119.4 73 82.2
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.3e-25 119.4 73 82.2
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 1.3e-25 119.4 73 82.2
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 1.7e-25 119.0 75 81.3
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 1.7e-25 119.0 73 83.6
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 1.7e-25 119.0 73 80.8
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 1.7e-25 119.0 73 79.5
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 1.7e-25 119.0 73 79.5
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 2.2e-25 118.6 63 92.1
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 2.2e-25 118.6 75 78.7
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 2.2e-25 118.6 75 80.0
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 2.8e-25 118.2 73 80.8
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 2.8e-25 118.2 73 80.8
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 2.8e-25 118.2 73 83.6
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 2.8e-25 118.2 73 80.8
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 3.7e-25 117.9 72 80.6
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 3.7e-25 117.9 72 80.6
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 3.7e-25 117.9 72 80.6
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 3.7e-25 117.9 72 80.6
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 3.7e-25 117.9 72 80.6
Cfa012819 Carpinus fangiana HOM05D003404 ORTHO05D004052 3.7e-25 117.9 67 91.0
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 3.7e-25 117.9 72 80.6
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 4.8e-25 117.5 62 96.8
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 4.8e-25 117.5 75 78.7
arahy.Tifrunner.gnm1.ann1.4Z0G7J Arachis hypogaea HOM05D003404 ORTHO05D004052 4.8e-25 117.5 73 82.2
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 4.8e-25 117.5 73 79.5
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 4.8e-25 117.5 71 83.1
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 4.8e-25 117.5 75 77.3
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 4.8e-25 117.5 68 83.8
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 4.8e-25 117.5 68 83.8
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 4.8e-25 117.5 75 77.3
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 6.3e-25 117.1 73 78.1
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 6.3e-25 117.1 75 76.0
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 6.3e-25 117.1 73 78.1
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 6.3e-25 117.1 73 78.1
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 8.2e-25 116.7 75 77.3
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 1.1e-24 116.3 73 80.8
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 1.1e-24 116.3 75 80.0
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 1.1e-24 116.3 75 80.0
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 1.1e-24 116.3 73 80.8
ATR1089G109 Amborella trichopoda HOM05D003404 ORTHO05D004052 1.8e-24 115.5 73 78.1
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 2.4e-24 115.2 75 80.0
Cfa005443 Carpinus fangiana HOM05D003404 ORTHO05D004052 4.1e-24 114.4 64 90.6
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 4.1e-24 114.4 61 93.4
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 5.3e-24 114.0 74 83.8
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 6.9e-24 113.6 73 79.5
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 1.5e-23 112.5 73 76.7
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 2.0e-23 112.1 73 74.0
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 4.5e-23 110.9 73 75.3
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 7.7e-23 110.2 75 69.3
Atru.chr11.445 Acer truncatum HOM05D000107 ORTHO05D000062 1.3e-22 109.4 63 92.1
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 1.3e-22 109.4 72 77.8
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 1.7e-22 109.0 73 72.6
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 6.5e-22 107.1 73 74.0
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 1.1e-21 106.3 73 67.1
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 4.2e-21 104.4 73 64.4
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 5.5e-21 104.0 65 78.5
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 5.5e-21 104.0 65 78.5
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 1.2e-20 102.8 71 69.0
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 1.6e-20 102.4 67 74.6
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 2.7e-20 101.7 73 65.8
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 6.1e-20 100.5 73 64.4
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 1.1e-18 96.3 72 65.3
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 6.3e-17 90.5 73 58.9
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 2.9e-14 81.6 73 60.3
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 4.7e-12 74.3 70 55.7
TPR.G18134 Trifolium pratense HOM05D003404 ORTHO05D004052 5.2e-11 70.9 63 65.1
SEGI_11687 Sequoiadendron giganteum HOM05D003404 ORTHO05D000003 2.0e-10 68.9 46 71.7
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 7.5e-10 67.0 34 94.1
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 9.1e-08 60.1 68 44.1
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 2.7e-07 58.5 45 73.3
Gohir.A11G223200 Gossypium hirsutum HOM05D003404 ORTHO05D004052 5.9e-07 57.4 63 50.8
Prupe.6G174400 Prunus persica HOM05D003404 ORTHO05D004052 8.5e-06 53.5 33 75.8


User provided reference genes

Program Settings