Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 0.0e+00 1121.3 577 100.0
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 4.2e-256 887.9 583 79.2
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.4e-246 856.3 582 77.1
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.0e-242 842.4 573 74.9
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.7e-241 839.3 582 75.3
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.6e-241 837.4 532 81.2
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.6e-241 837.4 532 81.2
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 9.5e-240 833.6 578 74.2
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 1.2e-239 833.2 578 73.9
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 1.6e-239 832.8 503 82.1
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.8e-239 832.0 585 74.5
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.0e-238 830.1 583 73.9
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 5.2e-238 827.8 582 73.5
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 5.2e-238 827.8 579 74.8
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.0e-237 825.9 578 74.4
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.6e-237 825.5 573 74.7
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.7e-236 822.8 537 76.9
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.7e-236 822.8 583 74.8
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 2.2e-236 822.4 506 82.0
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.4e-236 820.8 596 71.6
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.4e-235 818.9 535 76.6
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 3.5e-234 815.1 581 74.7
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 5.9e-234 814.3 563 73.7
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.3e-233 812.4 586 74.2
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 8.6e-233 810.4 583 74.4
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 2.1e-231 805.8 533 78.4
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.4e-230 803.1 591 73.4
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.8e-230 802.7 561 75.2
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 2.3e-230 802.4 536 74.8
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 5.2e-230 801.2 585 71.1
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 5.2e-230 801.2 556 76.4
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.6e-229 798.9 592 71.8
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 4.4e-229 798.1 579 73.1
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.3e-228 796.6 554 74.4
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.7e-228 796.2 541 76.2
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.7e-228 796.2 578 73.0
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 1.7e-228 796.2 585 70.8
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 2.9e-228 795.4 550 76.0
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 8.3e-228 793.9 573 72.9
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.4e-227 793.1 587 71.4
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 3.5e-226 788.5 585 70.9
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 1.0e-225 786.9 514 78.4
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 2.3e-225 785.8 514 76.1
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 3.0e-225 785.4 536 76.9
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 3.0e-225 785.4 506 77.3
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.6e-225 783.9 586 70.5
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 8.6e-225 783.9 503 76.9
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.3e-224 781.9 594 69.5
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 9.5e-224 780.4 532 74.1
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.1e-223 779.2 594 69.4
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 2.1e-223 779.2 502 79.3
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 3.6e-223 778.5 533 74.1
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 6.8e-222 774.2 578 69.6
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 8.9e-222 773.9 585 69.7
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 2.0e-221 772.7 534 74.2
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 2.6e-221 772.3 533 73.4
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 2.6e-221 772.3 533 73.4
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.6e-221 772.3 571 70.6
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 3.4e-221 771.9 534 73.4
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 5.8e-221 771.2 522 75.5
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 2.9e-220 768.8 583 69.5
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 3.7e-220 768.5 533 73.0
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 6.4e-220 767.7 507 77.3
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.1e-219 766.9 531 73.6
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 1.1e-219 766.9 534 73.2
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.9e-219 766.1 534 73.2
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 3.2e-219 765.4 581 69.5
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 4.1e-219 765.0 578 69.4
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 4.1e-219 765.0 580 70.0
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 4.1e-219 765.0 516 75.8
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 5.4e-219 764.6 512 75.8
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 7.1e-219 764.2 579 69.9
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.7e-218 762.3 592 68.2
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 7.8e-218 760.8 553 72.9
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.3e-217 759.2 578 68.2
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.9e-216 756.1 616 66.4
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 1.6e-215 753.1 519 75.3
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 6.2e-215 751.1 584 69.3
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 6.2e-215 751.1 533 70.7
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.1e-214 750.4 539 73.5
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.8e-214 749.6 540 72.2
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 7.1e-211 737.6 529 73.2
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 7.8e-210 734.2 576 67.7
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 5.1e-209 731.5 613 64.6
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.1e-208 730.3 581 68.8
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.9e-208 729.6 582 67.9
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 2.4e-206 722.6 583 67.1
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.9e-203 713.0 461 78.7
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 6.0e-202 708.0 630 63.5
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.3e-201 706.1 576 66.1
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 5.1e-201 704.9 539 68.8
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 9.6e-200 700.7 585 64.4
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.1e-198 697.2 544 66.7
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 2.1e-194 682.9 593 63.1
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.3e-193 680.2 634 60.9
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.3e-192 675.6 459 73.6
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.3e-192 675.2 570 63.0
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 7.1e-187 657.9 488 65.2
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 2.3e-185 652.9 581 62.0
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 2.3e-185 652.9 578 61.4
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.0e-172 610.9 389 79.7
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 2.2e-172 609.8 419 75.9
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 8.2e-167 591.3 559 59.4
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 4.1e-166 589.0 439 69.7
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.0e-164 582.0 523 61.2
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.7e-159 565.8 466 60.1
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.3e-140 504.2 459 62.3
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.9e-140 503.1 441 57.1
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 1.9e-139 500.4 345 74.5
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.3e-137 493.4 521 53.7
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 3.7e-135 486.1 485 54.0
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 2.1e-130 470.3 452 53.1
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 8.0e-130 468.4 338 74.6
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 2.8e-127 459.9 585 44.4
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 8.3e-127 458.4 510 52.0
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.4e-120 436.4 395 59.2
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 2.2e-119 433.7 342 67.0
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.1e-110 404.8 488 46.5
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.7e-109 400.2 266 78.2
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.8e-89 334.3 282 57.1
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 9.9e-88 328.6 204 76.5
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 8.7e-76 288.9 202 66.8
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.9e-75 287.7 230 65.2
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 3.7e-74 283.5 173 80.9
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 4.0e-73 280.0 227 66.5
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 1.2e-69 268.5 262 51.9
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 3.7e-66 256.9 276 54.7
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.4e-64 250.4 391 38.9
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.4e-62 245.0 178 70.2
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.9e-60 236.9 246 54.9
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 4.1e-57 226.9 285 45.3
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.9e-55 220.7 135 80.0
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.4e-46 191.8 177 61.0
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 1.9e-46 191.4 113 80.5
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.4e-44 185.3 128 70.3
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 4.4e-43 180.3 277 41.9
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.2e-38 164.1 122 68.0
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 7.4e-35 152.9 146 56.8
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 8.2e-34 149.4 269 36.1
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 1.3e-31 142.1 106 65.1
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.8e-31 140.6 95 74.7
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 4.1e-25 120.6 276 33.0
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 7.0e-25 119.8 88 68.2
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.2e-24 119.0 123 51.2
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 7.7e-24 116.3 112 52.7
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.6e-21 107.5 232 37.9
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 1.8e-20 105.1 75 69.3
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 7.5e-19 99.8 56 87.5
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 6.3e-18 96.7 96 49.0
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 1.4e-17 95.5 57 86.0
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 3.1e-17 94.4 71 67.6
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.7e-16 91.3 92 47.8
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 4.5e-16 90.5 71 64.8
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.5e-14 84.7 55 72.7
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.3e-12 78.2 251 27.1
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 3.4e-11 74.3 59 61.0
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 5.9e-08 63.5 108 35.2
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 2.3e-07 61.6 36 80.6
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.6e-06 57.0 40 77.5
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 7.3e-06 56.6 52 53.8


User provided reference genes

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