Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 2663.6 1327 100.0
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 2037.3 1333 76.9
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1900.2 1323 73.2
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1887.1 1337 72.7
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1881.7 1337 71.7
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1878.6 1337 72.3
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1874.0 1324 72.1
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1848.6 1340 69.6
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1832.4 1337 70.3
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1831.6 1337 70.8
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1831.2 1317 69.9
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1815.4 1314 70.3
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1788.9 1336 69.2
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1773.1 1336 68.3
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1765.4 1337 68.1
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1761.1 1324 66.9
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1760.3 1380 66.4
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1757.7 1406 64.9
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1754.2 1337 68.1
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1750.3 1337 68.0
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1749.6 1293 68.4
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1746.1 1337 67.8
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1746.1 1340 68.1
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1741.1 1337 67.8
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1737.6 1344 67.6
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1735.7 1482 62.1
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1728.4 1352 66.8
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1722.6 1207 72.1
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1721.8 1207 72.4
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1718.0 1248 68.3
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1694.9 1342 64.8
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1694.1 1339 64.7
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1689.5 1334 63.9
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1687.5 1348 64.4
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1686.0 1350 63.6
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1683.3 1339 64.3
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1682.5 1339 63.9
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1675.6 1335 64.0
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1672.5 1336 63.8
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1669.1 1329 65.3
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1665.6 1342 63.4
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1662.1 1311 64.4
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1661.7 1340 63.5
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1659.8 1310 64.1
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1657.9 1339 64.2
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1653.3 1319 65.0
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1649.8 1336 63.0
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1642.1 1335 63.1
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1640.9 1336 63.5
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1634.0 1342 63.6
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1632.5 1337 62.7
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1632.5 1314 65.3
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1632.1 1336 63.0
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1631.7 1339 63.1
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1627.1 1340 63.4
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1626.3 1342 63.4
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1622.4 1325 62.9
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1605.5 1342 62.1
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1604.7 1327 63.5
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1604.3 1315 62.4
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1600.9 1349 62.0
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1598.9 1349 62.1
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1596.6 1328 62.9
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1588.9 1342 61.5
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1578.1 1329 62.9
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1577.8 1341 62.3
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1577.0 1343 61.1
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1576.6 1343 62.0
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1573.9 1339 61.3
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1572.4 1320 61.5
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1558.1 1314 61.5
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1549.3 1338 60.7
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1526.1 1338 61.1
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1523.8 1341 61.0
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1509.2 1331 60.3
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1495.3 1339 59.3
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1494.9 1314 59.4
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1467.6 1340 59.9
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1466.8 1340 59.6
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1464.5 1339 59.3
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1464.1 1340 59.7
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1454.5 1340 58.1
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1451.8 1340 59.0
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1451.8 1340 59.0
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1439.5 1338 57.5
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1429.8 1254 59.0
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1425.6 1330 56.4
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1328.9 1321 54.7
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1306.6 1100 63.0
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1298.9 986 68.2
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1282.3 1320 53.5
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1275.0 1322 51.6
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1270.8 906 68.8
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1269.2 1324 52.3
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1239.2 1338 50.0
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1226.1 992 65.2
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1184.9 1250 52.6
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1140.6 862 67.1
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 2.4e-302 1042.7 1305 48.1
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 8.2e-287 991.1 1337 42.9
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 7.2e-259 898.3 1269 41.8
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 7.0e-254 881.7 1315 40.9
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 4.7e-250 869.0 1133 43.2
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 3.8e-236 822.8 1346 38.3
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 2.5e-227 793.5 961 47.1
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 1.9e-187 661.0 471 71.5
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 2.9e-183 647.1 585 61.2
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.9e-175 620.5 586 53.9
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 9.8e-131 472.6 1141 30.3
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 1.5e-115 422.2 291 70.4
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.6e-109 402.1 331 65.3
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.9e-102 378.6 321 59.5
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.5e-99 369.0 1048 30.2
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.6e-99 368.2 343 57.4
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 8.7e-87 326.6 260 67.7
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 1.2e-67 263.1 235 57.9
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.7e-64 251.9 188 66.0
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 3.5e-64 251.5 311 47.6
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.1e-56 225.7 168 64.9
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 3.9e-55 221.5 302 46.0
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.3e-52 211.1 151 70.2
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 3.2e-41 175.3 119 68.1
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 7.7e-35 154.1 127 66.1
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 9.4e-33 147.1 668 25.7
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 1.2e-22 113.6 109 54.1
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 1.7e-21 109.8 102 50.0
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 9.1e-20 104.0 107 53.3
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 8.0e-16 90.9 110 50.9
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 6.3e-13 81.3 65 63.1
BolC7t41436H Brassica oleracea HOM05D005691 ORTHO05D007096 9.5e-09 67.4 143 35.0
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 1.0e-07 63.9 133 36.1
Ah.01g013690 Amaranthus hybridus HOM05D005691 ORTHO05D007096 7.5e-06 57.8 71 52.1
Ah.14g082590 Amaranthus hybridus HOM05D005691 ORTHO05D007096 7.5e-06 57.8 71 52.1


User provided reference genes

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