Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 2.6e-42 174.9 81 100.0
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 8.8e-35 149.8 80 85.0
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 5.9e-23 110.5 79 58.2
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 1.0e-22 109.8 79 59.5
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 3.9e-22 107.8 79 60.8
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.9e-21 105.5 88 53.4
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 3.3e-21 104.8 79 57.0
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 3.3e-21 104.8 79 59.5
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.2e-20 102.8 79 57.0
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 3.6e-20 101.3 79 57.0
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.1e-19 99.8 80 56.2
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.1e-19 99.8 80 56.2
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.1e-19 99.8 80 56.2
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.1e-19 99.8 80 56.2
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 1.4e-19 99.4 79 57.0
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 1.4e-19 99.4 79 57.0
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 4.0e-19 97.8 80 57.5
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 5.2e-19 97.4 80 56.2
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 5.2e-19 97.4 80 55.0
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 6.8e-19 97.1 73 54.8
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 6.8e-19 97.1 79 55.7
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 6.8e-19 97.1 73 54.8
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 1.2e-18 96.3 79 55.7
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 1.2e-18 96.3 79 55.7
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 1.2e-18 96.3 74 55.4
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 2.0e-18 95.5 79 54.4
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 3.4e-18 94.7 73 54.8
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 4.4e-18 94.4 73 50.7
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 4.4e-18 94.4 73 53.4
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 4.4e-18 94.4 73 53.4
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 1.7e-17 92.4 79 49.4
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 2.2e-17 92.0 72 54.2
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 2.2e-17 92.0 73 54.8
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 3.7e-17 91.3 73 52.1
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 4.9e-17 90.9 64 62.5
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 8.3e-17 90.1 79 51.9
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 8.3e-17 90.1 74 52.7
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 1.1e-16 89.7 71 57.7
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 1.4e-16 89.4 74 52.7
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 1.9e-16 89.0 74 51.4
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 2.4e-16 88.6 73 54.8
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 3.2e-16 88.2 73 47.9
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 3.2e-16 88.2 79 48.1
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 3.2e-16 88.2 74 51.4
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 4.1e-16 87.8 79 50.6
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 5.4e-16 87.4 74 50.0
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.6e-15 85.9 73 54.8
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 2.7e-15 85.1 79 44.3
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 2.7e-15 85.1 79 44.3
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 3.5e-15 84.7 73 53.4
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 3.5e-15 84.7 73 53.4
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 3.5e-15 84.7 73 53.4
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 6.0e-15 84.0 80 48.8
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 6.0e-15 84.0 80 50.0
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 6.0e-15 84.0 80 47.5
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 6.0e-15 84.0 79 51.9
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 7.8e-15 83.6 79 43.0
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 1.0e-14 83.2 73 45.2
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 1.0e-14 83.2 79 44.3
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 1.3e-14 82.8 80 50.0
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 1.3e-14 82.8 80 48.8
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.3e-14 82.8 80 48.8
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.3e-14 82.8 80 48.8
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.3e-14 82.8 80 48.8
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 1.3e-14 82.8 71 53.5
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 3.0e-14 81.6 80 51.2
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 3.9e-14 81.3 80 52.5
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 3.9e-14 81.3 81 48.1
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 3.9e-14 81.3 79 46.8
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 5.0e-14 80.9 69 52.2
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.0e-14 80.9 69 52.2
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.0e-14 80.9 69 52.2
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.0e-14 80.9 69 52.2
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.0e-14 80.9 69 52.2
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.0e-14 80.9 69 52.2
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.0e-14 80.9 69 52.2
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 6.6e-14 80.5 80 47.5
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 6.6e-14 80.5 69 50.7
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 6.6e-14 80.5 79 48.1
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 8.6e-14 80.1 80 47.5
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 8.6e-14 80.1 75 49.3
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 1.1e-13 79.7 76 50.0
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 1.5e-13 79.3 72 47.2
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 2.5e-13 78.6 71 46.5
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 4.3e-13 77.8 74 51.4
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 4.3e-13 77.8 74 51.4
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 5.6e-13 77.4 60 53.3
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 9.5e-13 76.6 75 50.7
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 9.5e-13 76.6 74 54.1
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 2.1e-12 75.5 72 43.1
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 3.6e-12 74.7 79 48.1
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 8.1e-12 73.6 71 42.3
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 1.4e-11 72.8 74 45.9
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 5.2e-11 70.9 72 43.1
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 5.2e-11 70.9 79 40.5
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 6.8e-11 70.5 79 48.1
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 8.9e-11 70.1 73 42.5
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 8.9e-11 70.1 73 42.5
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 8.9e-11 70.1 73 42.5
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 8.9e-11 70.1 73 42.5
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 8.9e-11 70.1 73 42.5
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 8.9e-11 70.1 73 42.5
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 8.9e-11 70.1 73 42.5
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 8.9e-11 70.1 73 42.5
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 1.2e-10 69.7 73 42.5
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 1.2e-10 69.7 79 40.5
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 2.6e-10 68.6 72 40.3
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 5.8e-10 67.4 79 40.5
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 7.5e-10 67.0 73 41.1
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 7.5e-10 67.0 73 41.1
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 1.7e-09 65.9 73 41.1
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 2.9e-09 65.1 56 51.8
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 3.7e-09 64.7 79 35.4
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 4.9e-09 64.3 73 39.7
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 8.3e-09 63.5 73 39.7
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 8.3e-09 63.5 73 39.7
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 1.9e-08 62.4 62 51.6
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.9e-08 62.4 72 38.9
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 2.4e-08 62.0 73 38.4
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 4.1e-08 61.2 99 38.4
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 2.1e-07 58.9 56 44.6
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 2.7e-07 58.5 72 34.7
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 2.3e-06 55.5 65 35.4
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 3.0e-06 55.1 78 32.1
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 6.6e-06 53.9 47 40.4
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 8.6e-06 53.5 54 42.6


User provided reference genes

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