Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 3.8e-171 604.7 310 100.0
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.9e-141 506.1 308 83.1
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 2.5e-138 495.7 310 82.3
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 2.5e-138 495.7 314 80.3
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 2.1e-137 492.7 310 81.0
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 6.2e-137 491.1 310 81.0
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 6.2e-137 491.1 313 78.9
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 8.1e-137 490.7 310 81.6
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 8.1e-137 490.7 310 81.6
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.5e-135 486.5 310 81.0
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.0e-135 486.1 313 78.6
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.9e-134 482.3 311 79.7
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.9e-134 482.3 311 79.7
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 3.8e-134 481.9 308 81.2
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.4e-133 478.0 311 79.1
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 1.2e-132 476.9 316 79.4
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 3.5e-132 475.3 316 78.8
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.7e-131 473.0 311 76.2
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 3.9e-131 471.9 316 78.5
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 3.3e-130 468.8 310 77.1
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 9.6e-130 467.2 311 76.5
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 1.3e-129 466.8 310 76.1
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 4.8e-129 464.9 316 77.8
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.0e-128 461.8 312 76.0
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 4.0e-128 461.8 313 76.0
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.0e-128 461.8 313 76.0
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 1.2e-127 460.3 316 75.6
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 4.5e-127 458.4 313 75.7
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 5.8e-127 458.0 315 75.6
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 9.9e-127 457.2 310 77.1
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.7e-126 456.4 312 76.9
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 2.2e-126 456.1 315 73.3
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.9e-126 454.9 311 75.9
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 4.9e-126 454.9 314 74.8
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 6.4e-126 454.5 316 76.3
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.1e-125 453.8 307 76.5
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 1.1e-125 453.8 310 75.2
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 1.9e-125 453.0 320 72.8
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 4.2e-125 451.8 351 68.7
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 4.2e-125 451.8 311 75.6
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 5.4e-125 451.4 315 75.6
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 5.4e-125 451.4 312 72.8
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 7.1e-125 451.1 311 75.9
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 1.2e-124 450.3 310 74.2
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.6e-124 449.9 311 74.3
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.6e-124 449.9 311 74.3
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 2.7e-124 449.1 310 76.5
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 3.5e-124 448.7 311 75.6
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 7.9e-124 447.6 315 75.2
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.3e-123 446.0 312 74.7
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 3.0e-123 445.7 311 74.9
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 3.0e-123 445.7 315 72.7
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 3.9e-123 445.3 313 73.2
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 6.7e-123 444.5 312 74.4
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 6.7e-123 444.5 312 74.4
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.5e-122 442.6 313 74.1
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.3e-122 442.2 312 74.4
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.6e-121 439.9 269 84.4
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.6e-121 439.9 310 73.2
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 2.1e-121 439.5 309 73.1
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 2.1e-121 439.5 309 73.1
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.8e-120 436.4 312 73.4
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.8e-120 436.4 311 72.3
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 6.9e-120 434.5 346 67.1
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 6.9e-120 434.5 309 73.8
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 2.0e-119 433.0 316 72.5
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 5.8e-119 431.4 317 71.0
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 9.9e-119 430.6 311 72.3
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.9e-117 426.4 312 73.4
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 2.4e-117 426.0 310 71.0
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 2.4e-117 426.0 310 70.6
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 3.2e-117 425.6 312 70.8
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 4.2e-117 425.2 314 71.7
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 5.5e-117 424.9 311 69.8
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 5.5e-117 424.9 310 71.9
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 2.1e-116 422.9 308 70.5
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 7.9e-116 421.0 313 71.6
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 7.9e-116 421.0 313 70.0
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.0e-115 420.6 310 71.0
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.3e-115 419.5 316 69.0
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 5.1e-115 418.3 310 71.0
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 6.7e-115 417.9 310 70.0
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 6.7e-115 417.9 312 70.5
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 6.7e-115 417.9 310 70.0
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 6.7e-115 417.9 310 70.0
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 6.7e-115 417.9 312 70.5
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 6.7e-115 417.9 310 70.6
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 8.7e-115 417.5 290 74.1
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 1.9e-114 416.4 310 71.6
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 2.5e-114 416.0 310 70.0
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.1e-112 410.6 312 70.2
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 1.8e-112 409.8 305 71.1
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 2.0e-111 406.4 311 69.5
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 2.2e-110 402.9 315 67.6
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 2.9e-110 402.5 311 68.2
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 2.3e-107 392.9 312 67.0
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.9e-107 392.1 295 69.2
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.3e-106 388.7 224 86.2
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.0e-103 379.8 251 76.9
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 4.5e-103 378.6 341 59.5
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.7e-102 376.7 328 61.0
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.9e-101 373.2 335 61.2
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.9e-101 373.2 343 60.1
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 5.5e-101 371.7 269 73.6
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 3.9e-99 365.5 307 63.8
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.3e-98 362.5 267 71.5
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 2.2e-97 359.8 310 60.6
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.1e-96 355.9 310 64.2
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.2e-94 349.7 268 69.4
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.2e-94 349.7 319 58.0
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 5.0e-94 348.6 203 83.7
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 7.2e-93 344.7 211 81.5
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 2.6e-90 336.3 315 61.6
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.5e-87 327.0 257 68.1
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 2.0e-87 326.6 310 57.7
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 6.1e-84 315.1 312 57.4
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 1.6e-79 300.4 185 79.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 5.9e-71 271.9 294 53.1
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 1.5e-69 267.3 234 64.5
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 5.2e-67 258.8 414 43.5
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 2.8e-65 253.1 376 43.9
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 3.1e-64 249.6 250 58.8
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.7e-60 235.7 192 70.3
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.4e-51 207.6 192 60.9
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.3e-49 201.1 311 44.4
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 6.4e-49 198.7 117 86.3
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 2.0e-47 193.7 224 48.7
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.3e-46 191.0 189 56.1
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 1.3e-41 174.5 270 42.2
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.1e-39 167.2 169 56.8
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 6.0e-39 165.6 95 87.4
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 7.3e-37 158.7 204 46.1
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.6e-36 157.5 249 44.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.1e-35 154.8 96 84.4
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.3e-35 153.7 126 65.1
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.3e-35 153.7 126 65.1
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.6e-34 150.2 122 65.6
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.5e-34 148.7 93 83.9
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 3.7e-33 146.4 191 46.1
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 7.8e-31 138.7 140 56.4
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.3e-29 132.9 80 82.5
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.4e-27 127.1 109 62.4
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 1.7e-25 120.9 231 39.0
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 7.8e-23 112.1 99 62.6
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.1e-19 100.1 62 82.3
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 2.9e-17 93.6 128 47.7
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 9.0e-11 72.0 42 76.2
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.9e-08 64.3 46 67.4
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 9.3e-08 62.0 62 58.1
Eucgr.G01782 Eucalyptus grandis HOM05D002972 ORTHO05D002272 3.5e-07 60.1 38 63.2
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 4.6e-07 59.7 40 67.5
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 7.9e-07 58.9 68 45.6
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.0e-06 58.5 57 63.2
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.8e-06 57.8 85 38.8
RcHm_v2.0_Chr6g0278431 Rosa chinensis HOM05D002972 ORTHO05D002272 6.7e-06 55.8 35 62.9


User provided reference genes

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