Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.8e-166 589.3 334 100.0
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 3.0e-153 545.4 337 86.6
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 3.0e-153 545.4 338 91.7
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.1e-152 543.5 337 90.8
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.1e-152 543.5 337 90.8
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 1.5e-152 543.1 334 90.1
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 5.6e-152 541.2 336 91.4
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 5.6e-152 541.2 337 90.5
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.1e-151 539.3 336 89.6
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 2.8e-151 538.9 338 89.3
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 8.1e-151 537.3 337 89.9
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 8.1e-151 537.3 336 90.5
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.4e-150 536.6 337 89.6
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.8e-150 536.2 336 89.3
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 2.4e-150 535.8 337 90.2
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.1e-150 535.4 337 90.5
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.1e-150 535.4 337 89.9
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 9.0e-150 533.9 338 87.9
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.2e-149 533.5 337 89.6
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 1.5e-149 533.1 341 89.4
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 2.0e-149 532.7 339 89.4
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 2.6e-149 532.3 349 88.0
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 4.5e-149 531.6 337 89.3
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 7.6e-149 530.8 352 87.2
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 7.6e-149 530.8 336 89.3
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 7.6e-149 530.8 340 89.4
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 1.7e-148 529.6 337 88.7
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.7e-148 529.6 337 89.3
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 4.9e-148 528.1 337 88.7
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 6.4e-148 527.7 337 88.1
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.9e-147 526.2 336 87.2
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 2.4e-147 525.8 335 89.3
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 4.2e-147 525.0 337 88.1
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 7.1e-147 524.2 336 86.9
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 7.1e-147 524.2 336 87.5
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 7.1e-147 524.2 336 87.5
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 2.7e-146 522.3 337 87.2
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 4.6e-146 521.5 340 87.1
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 7.9e-146 520.8 337 88.1
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 2.3e-145 519.2 336 86.3
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 2.3e-145 519.2 340 87.9
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.0e-145 518.8 337 86.6
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 5.1e-145 518.1 337 86.4
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 6.7e-145 517.7 336 87.5
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 5.6e-144 514.6 338 86.1
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.3e-143 513.5 337 80.4
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.3e-143 513.5 339 86.4
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.6e-143 513.1 372 80.9
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.6e-143 513.1 334 87.7
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 3.7e-143 511.9 338 86.7
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 6.2e-143 511.1 337 85.8
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 1.4e-142 510.0 337 86.1
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 3.1e-142 508.8 335 85.4
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 4.0e-142 508.4 338 86.7
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 4.0e-142 508.4 338 86.7
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 4.0e-142 508.4 338 86.7
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 4.0e-142 508.4 338 86.7
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.2e-141 506.9 337 85.5
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.5e-141 506.5 337 86.1
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 3.4e-141 505.4 337 84.6
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 4.5e-141 505.0 338 84.9
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 5.8e-141 504.6 365 80.0
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 7.6e-141 504.2 338 84.9
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.0e-140 503.8 338 83.1
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 1.7e-140 503.1 338 82.5
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.7e-140 503.1 339 84.7
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 2.9e-140 502.3 339 84.7
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 3.8e-140 501.9 336 84.8
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 6.5e-140 501.1 337 84.9
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 6.5e-140 501.1 352 83.5
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 8.4e-140 500.7 359 81.9
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.1e-139 500.4 336 84.8
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.4e-139 500.0 338 86.4
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.9e-139 499.6 338 82.2
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 7.1e-139 497.7 327 86.9
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 9.3e-139 497.3 321 88.5
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 3.5e-138 495.4 344 83.1
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 3.5e-138 495.4 355 81.1
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 3.5e-138 495.4 355 81.1
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 4.6e-138 495.0 337 86.4
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 4.6e-138 495.0 337 85.5
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.0e-137 493.8 336 82.7
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.3e-137 493.4 340 80.3
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 3.0e-137 492.3 347 82.4
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 1.5e-136 490.0 321 88.2
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.9e-136 489.6 338 83.1
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.9e-136 489.6 338 83.1
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 5.7e-136 488.0 336 78.0
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 2.1e-135 486.1 321 86.0
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.8e-135 485.7 337 82.2
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 3.7e-135 485.3 331 84.6
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 4.8e-135 485.0 337 82.2
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.4e-134 483.4 347 80.7
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.8e-134 483.0 330 84.2
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.4e-134 482.6 325 86.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.4e-134 482.6 325 86.5
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 4.1e-134 481.9 348 81.0
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 9.0e-134 480.7 334 81.1
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 2.9e-132 475.7 377 74.8
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.1e-131 473.8 366 77.0
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.2e-131 471.1 337 82.5
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 3.9e-129 465.3 336 73.8
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.2e-127 459.5 365 76.2
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.2e-127 459.5 365 76.2
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 1.5e-125 453.4 305 87.2
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 8.5e-124 447.6 336 78.3
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.6e-122 443.4 335 79.1
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 4.8e-119 431.8 334 81.1
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 6.3e-119 431.4 284 87.3
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 9.4e-115 417.5 352 71.9
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 8.8e-113 411.0 516 54.5
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 8.2e-111 404.4 274 89.4
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 2.5e-107 392.9 223 87.4
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.0e-105 386.0 339 72.9
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.6e-101 373.6 321 73.5
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 9.4e-99 364.4 254 86.6
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 2.1e-98 363.2 317 73.2
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 3.5e-93 345.9 277 74.0
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.7e-93 344.7 337 65.9
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 3.6e-90 335.9 334 64.1
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 5.9e-85 318.5 382 47.9
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 2.6e-80 303.1 165 89.1
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.1e-78 297.7 328 52.7
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.1e-67 261.2 183 73.2
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 6.0e-61 238.8 208 75.0
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 9.5e-59 231.5 327 45.0
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.6e-53 214.2 116 87.1
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 5.6e-43 179.1 82 98.8
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.8e-41 174.1 91 95.6
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 4.5e-40 169.5 165 65.5
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.9e-35 154.1 84 97.6
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.4e-33 147.9 84 91.7
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 4.9e-23 112.8 64 93.8
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 1.1e-22 111.7 55 96.4
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 9.0e-17 92.0 201 28.4
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.0e-15 88.6 232 29.3
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 1.0e-12 78.6 39 89.7
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.7e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.7e-12 75.5 41 90.2
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.8e-10 70.5 87 70.1
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 6.3e-10 69.3 45 73.3


User provided reference genes

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