Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2699 Acer truncatum HOM05D002494 ORTHO05D002673 1.4e-99 366.3 186 100.0
Ciclev10004135m.g Citrus clementina HOM05D002494 ORTHO05D002673 2.9e-49 199.1 192 60.4
Dinv38353 Davidia involucrata HOM05D002494 ORTHO05D002673 2.2e-44 183.0 177 57.1
CiPaw.02G089600 Carya illinoinensis HOM05D002494 ORTHO05D002673 5.3e-43 178.3 177 58.8
Actinidia40212 Actinidia chinensis HOM05D002494 ORTHO05D002673 7.2e-40 167.9 178 51.7
Actinidia23457 Actinidia chinensis HOM05D002494 ORTHO05D002673 1.6e-39 166.8 178 51.1
Dinv44457 Davidia involucrata HOM05D002494 ORTHO05D002673 2.1e-39 166.4 124 68.5
COL.COLO4_13973 Corchorus olitorius HOM05D002494 ORTHO05D002673 3.0e-38 162.5 179 52.5
Thecc.04G272000 Theobroma cacao HOM05D002494 ORTHO05D002673 5.7e-37 158.3 178 52.2
CSS0019247 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 2.8e-36 156.0 176 47.7
MD13G1178600 Malus domestica HOM05D002494 ORTHO05D002673 2.8e-36 156.0 176 51.1
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 3.7e-36 155.6 181 49.2
Gohir.D09G233100 Gossypium hirsutum HOM05D002494 ORTHO05D002673 1.1e-35 154.1 142 57.7
Gorai.006G256000 Gossypium raimondii HOM05D002494 ORTHO05D002673 1.1e-35 154.1 142 57.7
CSS0005255 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 2.4e-35 152.9 176 47.2
CSS0038359 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 2.4e-35 152.9 176 47.2
Duzib212G0707 Durio zibethinus HOM05D002494 ORTHO05D002673 7.0e-35 151.4 177 49.2
Manes.03G187900 Manihot esculenta HOM05D002494 ORTHO05D002673 1.2e-34 150.6 172 51.2
vmacro08242 Vaccinium macrocarpon HOM05D002494 ORTHO05D002673 1.2e-34 150.6 125 59.2
Prupe.1G147400 Prunus persica HOM05D002494 ORTHO05D002673 2.0e-34 149.8 196 45.9
MD16G1179800 Malus domestica HOM05D002494 ORTHO05D002673 5.9e-34 148.3 176 48.3
Oeu032696.1 Olea europaea HOM05D002494 ORTHO05D002673 5.9e-34 148.3 174 48.9
Rhsim04G0212900 Rhododendron simsii HOM05D002494 ORTHO05D002673 5.9e-34 148.3 180 45.6
Potri.010G028200 Populus trichocarpa HOM05D002494 ORTHO05D002673 2.2e-33 146.4 172 50.6
Sabra10G0012600 Salix brachista HOM05D002494 ORTHO05D002673 2.9e-33 146.0 172 48.3
Cfa015542 Carpinus fangiana HOM05D002494 ORTHO05D002673 6.5e-33 144.8 177 45.8
RcHm_v2.0_Chr4g0419781 Rosa chinensis HOM05D002494 ORTHO05D002673 2.7e-31 139.4 164 48.8
TAR365G0297 Trochodendron aralioides HOM05D002494 ORTHO05D002673 6.1e-31 138.3 200 43.0
MSTRG.3973 Avicennia marina HOM05D002494 ORTHO05D002673 1.4e-30 137.1 175 48.0
Haze_01007 Corylus avellana HOM05D002494 ORTHO05D002673 3.0e-30 136.0 157 47.1
Cc03_g02770 Coffea canephora HOM05D002494 ORTHO05D002673 2.0e-29 133.3 181 43.6
arahy.Tifrunner.gnm1.ann1.2UVC2V Arachis hypogaea HOM05D002494 ORTHO05D002673 2.6e-29 132.9 147 49.0
Glyma.15G100800 Glycine max HOM05D002494 ORTHO05D002673 4.4e-29 132.1 163 47.9
DCAR_027134 Daucus carota HOM05D002494 ORTHO05D002673 1.7e-28 130.2 184 42.4
Lj6C665T16 Lonicera japonica HOM05D002494 ORTHO05D002673 1.7e-28 130.2 187 44.9
Peaxi162Scf00592g00111 Petunia axillaris HOM05D002494 ORTHO05D002673 1.7e-28 130.2 121 53.7
Migut.G00286 Erythranthe guttata HOM05D002494 ORTHO05D002673 2.2e-28 129.8 163 45.4
Lalb_Chr15g0087191 Lupinus albus HOM05D002494 ORTHO05D002673 2.8e-28 129.4 171 46.2
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 6.3e-28 128.3 169 45.0
arahy.Tifrunner.gnm1.ann1.I64MY8 Arachis hypogaea HOM05D002494 ORTHO05D002673 1.1e-27 127.5 147 47.6
Glyma.13G211900 Glycine max HOM05D002494 ORTHO05D002673 1.8e-27 126.7 160 46.9
Cpa.g.sc16.69 Carica papaya HOM05D002494 ORTHO05D002673 2.4e-27 126.3 176 44.9
VMungo0540G1417 Vigna mungo HOM05D002494 ORTHO05D002673 2.4e-27 126.3 172 46.5
Eucgr.H03640 Eucalyptus grandis HOM05D002494 ORTHO05D002673 4.1e-27 125.6 141 51.1
Thhalv10019892m.g Eutrema salsugineum HOM05D002494 ORTHO05D002673 4.1e-27 125.6 172 42.4
Psat1g185440 Pisum sativum HOM05D002494 ORTHO05D002673 4.1e-27 125.6 178 43.8
FAN12G0871 Fragaria x ananassa HOM05D002494 ORTHO05D002673 5.4e-27 125.2 164 45.7
Nn3g21175 Nelumbo nucifera HOM05D002494 ORTHO05D002673 5.4e-27 125.2 197 40.1
FvH4_4g13920 Fragaria vesca HOM05D002494 ORTHO05D002673 7.0e-27 124.8 164 45.7
Lj6g0008158 Lotus japonicus HOM05D002494 ORTHO05D002673 9.1e-27 124.4 168 46.4
SalBow2G0767 Salvia bowleyana HOM05D002494 ORTHO05D002673 9.1e-27 124.4 149 47.7
FAN17G1311 Fragaria x ananassa HOM05D002494 ORTHO05D002673 1.6e-26 123.6 164 45.1
FAN22G2205 Fragaria x ananassa HOM05D002494 ORTHO05D002673 2.7e-26 122.9 164 45.1
Aa31LG5G16810 Aethionema arabicum HOM05D002494 ORTHO05D002673 3.5e-26 122.5 175 44.6
Ca_00591_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 7.7e-26 121.3 160 45.0
Phvul.006G158000 Phaseolus vulgaris HOM05D002494 ORTHO05D002673 7.7e-26 121.3 158 46.2
Sc13g0003790 Simmondsia chinensis HOM05D002494 ORTHO05D002673 1.0e-25 120.9 182 40.1
Medtr2g020960 Medicago truncatula HOM05D002494 ORTHO05D002673 2.3e-25 119.8 168 44.6
AL3G17180 Arabidopsis lyrata HOM05D002494 ORTHO05D002673 3.8e-25 119.0 173 39.9
Carub.0003s0571 Capsella rubella HOM05D002494 ORTHO05D002673 5.0e-25 118.6 172 41.3
C03p42080 Brassica napus HOM05D002494 ORTHO05D002673 6.6e-25 118.2 171 43.9
BolC3t16488H Brassica oleracea HOM05D002494 ORTHO05D002673 6.6e-25 118.2 171 43.9
BcaB03g14668 Brassica carinata HOM05D002494 ORTHO05D002673 8.6e-25 117.9 171 43.9
PSO302G0174 Papaver somniferum HOM05D002494 ORTHO05D002673 8.6e-25 117.9 142 47.2
BcaB03g14660 Brassica carinata HOM05D002494 ORTHO05D002673 1.5e-24 117.1 168 42.9
BcaC05g30043 Brassica carinata HOM05D002494 ORTHO05D002673 1.5e-24 117.1 168 42.9
Sp3g05200 Schrenkiella parvula HOM05D002494 ORTHO05D002673 2.5e-24 116.3 189 39.7
Sopen12g016080 Solanum pennellii HOM05D002494 ORTHO05D002673 2.5e-24 116.3 166 41.0
CARHR080780 Cardamine hirsuta HOM05D002494 ORTHO05D002673 3.3e-24 115.9 148 45.3
CAN.G290.14 Capsicum annuum HOM05D002494 ORTHO05D002673 4.2e-24 115.5 154 41.6
SGA_v2.0_scaffold237G43852 Striga asiatica HOM05D002494 ORTHO05D002673 4.2e-24 115.5 128 48.4
AT3G06290 Arabidopsis thaliana HOM05D002494 ORTHO05D002673 5.5e-24 115.2 172 39.5
EL10As5g23527 Beta vulgaris HOM05D002494 ORTHO05D002673 5.5e-24 115.2 169 41.4
A03p34620 Brassica napus HOM05D002494 ORTHO05D002673 7.2e-24 114.8 171 42.1
BraA03t12638Z Brassica rapa HOM05D002494 ORTHO05D002673 7.2e-24 114.8 171 42.1
PSO170G5860 Papaver somniferum HOM05D002494 ORTHO05D002673 7.2e-24 114.8 147 45.6
CANSAT78G1223 Cannabis sativa HOM05D002494 ORTHO05D002673 2.8e-23 112.8 175 41.7
TPR.G18023 Trifolium pratense HOM05D002494 ORTHO05D002673 3.6e-23 112.5 166 42.2
ECA233G5784 Erigeron canadensis HOM05D002494 ORTHO05D002673 8.0e-23 111.3 127 48.0
BcaC05g30040 Brassica carinata HOM05D002494 ORTHO05D002673 1.0e-22 110.9 182 40.7
Nitab4.5_0001505g0010 Nicotiana tabacum HOM05D002494 ORTHO05D002673 1.0e-22 110.9 148 45.9
THA.LOC104818830 Tarenaya hassleriana HOM05D002494 ORTHO05D002673 3.0e-22 109.4 126 48.4
BcaC05g29801 Brassica carinata HOM05D002494 ORTHO05D002673 8.9e-22 107.8 123 48.0
Nitab4.5_0000010g0140 Nicotiana tabacum HOM05D002494 ORTHO05D002673 8.9e-22 107.8 161 42.9
Ah.02g112310 Amaranthus hybridus HOM05D002494 ORTHO05D002673 1.2e-21 107.5 166 39.2
C05p60980 Brassica napus HOM05D002494 ORTHO05D002673 2.0e-21 106.7 107 51.4
A05p41740 Brassica napus HOM05D002494 ORTHO05D002673 4.4e-21 105.5 115 50.4
BraA05t22893Z Brassica rapa HOM05D002494 ORTHO05D002673 4.4e-21 105.5 115 50.4
AUR62024657 Chenopodium quinoa HOM05D002494 ORTHO05D002673 1.3e-20 104.0 148 39.9
TPR.G14187 Trifolium pratense HOM05D002494 ORTHO05D002673 2.8e-20 102.8 162 40.7
unitig_748.g8564 Utricularia gibba HOM05D002494 ORTHO05D002673 3.1e-19 99.4 122 42.6
Aqoxy2G03189 Aquilegia oxysepala HOM05D002494 ORTHO05D002673 7.0e-19 98.2 188 36.2
HanXRQChr09g0251551 Helianthus annuus HOM05D002494 ORTHO05D002673 4.5e-18 95.5 175 41.1
AUR62011813 Chenopodium quinoa HOM05D002494 ORTHO05D002673 5.9e-18 95.1 171 37.4
Sed0003410 Sechium edule HOM05D002494 ORTHO05D002673 5.9e-18 95.1 172 35.5
Zm00001eb329290 Zea mays HOM05D002494 ORTHO05D002673 5.9e-18 95.1 176 35.8
Hund09628 Selenicereus undatus HOM05D002494 ORTHO05D002673 7.8e-18 94.7 147 39.5
CsaV3_3G013900 Cucumis sativus L. HOM05D002494 ORTHO05D002673 2.9e-17 92.8 156 42.3
SHI00347 Sapria himalayana HOM05D002494 ORTHO05D002673 8.6e-17 91.3 139 39.6
Zm00001eb329310 Zea mays HOM05D002494 ORTHO05D002673 8.6e-17 91.3 175 34.9
Zm00001eb329320 Zea mays HOM05D002494 ORTHO05D002673 8.6e-17 91.3 175 34.9
Zm00001eb329350 Zea mays HOM05D002494 ORTHO05D002673 8.6e-17 91.3 89 48.3
ClCG05G005560 Citrullus lanatus HOM05D002494 ORTHO05D002673 1.5e-16 90.5 169 37.3
Zm00001eb094450 Zea mays HOM05D002494 ORTHO05D002673 1.5e-16 90.5 89 48.3
Lsat_1_v5_gn_6_69301 Lactuca sativa HOM05D002494 ORTHO05D002673 1.6e-15 87.0 120 43.3
MELO3C006582.2 Cucumis melo HOM05D002494 ORTHO05D002673 4.7e-15 85.5 128 44.5
ATR0626G271 Amborella trichopoda HOM05D002494 ORTHO05D002673 1.8e-14 83.6 121 40.5
HPP92_013672 Vanilla planifolia HOM05D002494 ORTHO05D002673 5.8e-13 78.6 87 42.5
CDE04G2572 Ceratophyllum demersum HOM05D002494 ORTHO05D002673 4.1e-11 72.4 165 30.3
Os07g0646000 Oryza sativa ssp. japonica HOM05D002494 ORTHO05D002673 1.1e-08 64.3 97 41.2
Zm00001eb160540 Zea mays HOM05D002494 ORTHO05D002673 4.3e-08 62.4 63 44.4
Zm00001eb302540 Zea mays HOM05D002494 ORTHO05D002673 4.3e-08 62.4 63 44.4


User provided reference genes

Program Settings