Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 2.1e-89 332.4 178 100.0
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 7.1e-53 211.1 118 95.8
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 2.3e-43 179.5 94 98.9
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 8.2e-41 171.0 166 63.3
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 4.0e-40 168.7 176 58.5
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 2.0e-39 166.4 177 57.1
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 5.8e-39 164.9 166 62.0
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 2.2e-38 162.9 162 62.3
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 3.8e-38 162.2 140 63.6
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 4.9e-38 161.8 141 67.4
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.9e-37 159.8 157 58.6
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.2e-36 157.1 153 57.5
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 6.0e-36 154.8 149 59.1
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.8e-35 153.3 163 54.6
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 2.3e-35 152.9 151 60.9
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 6.7e-35 151.4 139 58.3
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.5e-34 150.2 119 66.4
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.5e-34 149.4 147 56.5
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.5e-34 149.4 152 54.6
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 2.5e-34 149.4 155 54.2
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 4.3e-34 148.7 150 54.7
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 5.7e-34 148.3 128 64.8
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 9.7e-34 147.5 149 56.4
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 9.7e-34 147.5 156 53.2
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.3e-33 147.1 147 57.1
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.3e-33 147.1 133 60.9
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.6e-33 146.7 138 60.1
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 2.2e-33 146.4 137 59.1
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.8e-33 145.2 147 57.1
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.3e-33 144.8 145 56.6
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.8e-32 143.3 145 56.6
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.4e-32 142.9 148 56.8
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 2.4e-32 142.9 136 56.6
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.4e-32 142.9 150 52.7
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 2.4e-32 142.9 155 52.9
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 3.1e-32 142.5 149 55.0
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 3.1e-32 142.5 119 60.5
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 3.1e-32 142.5 132 55.3
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 4.1e-32 142.1 147 55.8
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 5.3e-32 141.7 152 54.6
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 5.3e-32 141.7 131 55.7
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 5.3e-32 141.7 167 51.5
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 9.0e-32 141.0 155 52.9
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 2.0e-31 139.8 164 48.8
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.6e-31 139.4 146 54.8
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 2.6e-31 139.4 123 58.5
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 3.4e-31 139.0 118 59.3
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.5e-31 138.7 141 53.2
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 5.9e-31 138.3 157 52.2
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 7.6e-31 137.9 148 50.7
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.0e-30 137.5 145 55.9
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.0e-30 137.5 147 53.1
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.3e-30 137.1 135 55.6
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 1.7e-30 136.7 153 51.0
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 2.2e-30 136.3 157 47.8
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.9e-30 136.0 146 53.4
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 3.8e-30 135.6 143 53.1
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 5.0e-30 135.2 146 54.8
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.0e-30 135.2 145 53.8
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 5.0e-30 135.2 155 52.3
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 6.5e-30 134.8 145 55.9
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 1.4e-29 133.7 120 57.5
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 2.5e-29 132.9 160 45.0
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 4.2e-29 132.1 130 55.4
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 4.2e-29 132.1 155 52.3
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 5.5e-29 131.7 158 51.9
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 9.3e-29 131.0 130 56.2
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 9.3e-29 131.0 143 54.5
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.2e-28 130.6 156 46.8
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.6e-28 130.2 152 50.0
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.6e-28 130.2 120 56.7
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 4.6e-28 128.6 138 54.3
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 6.1e-28 128.3 152 49.3
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 7.9e-28 127.9 143 52.4
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 7.9e-28 127.9 143 52.4
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 7.9e-28 127.9 163 49.1
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 7.9e-28 127.9 160 49.4
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 7.9e-28 127.9 131 51.9
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.8e-27 126.7 139 53.2
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.8e-27 126.7 145 48.3
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 2.3e-27 126.3 138 53.6
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 2.3e-27 126.3 138 53.6
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 3.9e-27 125.6 157 45.2
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 5.1e-27 125.2 135 52.6
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 5.1e-27 125.2 138 50.0
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 1.9e-26 123.2 139 50.4
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.9e-26 123.2 172 48.3
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 2.5e-26 122.9 89 68.5
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 3.3e-26 122.5 139 49.6
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 3.3e-26 122.5 147 49.7
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 3.3e-26 122.5 165 46.7
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 4.3e-26 122.1 151 49.0
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 5.7e-26 121.7 138 50.0
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 5.7e-26 121.7 169 47.9
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 7.4e-26 121.3 140 48.6
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.3e-25 120.6 157 47.8
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.7e-25 120.2 94 60.6
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.1e-24 117.5 155 46.5
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 4.1e-24 115.5 93 63.4
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 4.1e-24 115.5 101 57.4
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 5.3e-24 115.2 140 49.3
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 6.9e-24 114.8 138 50.0
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.2e-23 114.0 132 48.5
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.2e-23 114.0 87 65.5
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.2e-23 114.0 129 50.4
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.5e-23 113.6 140 48.6
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 2.6e-23 112.8 176 40.3
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 3.4e-23 112.5 116 50.9
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 3.4e-23 112.5 138 47.1
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 3.4e-23 112.5 137 48.9
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 4.5e-23 112.1 138 49.3
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 4.5e-23 112.1 138 49.3
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 4.5e-23 112.1 138 49.3
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 4.5e-23 112.1 159 42.8
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 5.9e-23 111.7 159 43.4
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 5.9e-23 111.7 117 48.7
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.0e-22 110.9 138 47.1
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.0e-22 110.9 138 47.1
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.3e-22 110.5 147 47.6
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.7e-22 110.2 83 66.3
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.7e-22 110.2 92 57.6
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 2.2e-22 109.8 159 42.8
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 2.2e-22 109.8 170 43.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.9e-22 109.4 145 47.6
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 3.8e-22 109.0 159 42.8
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 3.8e-22 109.0 94 54.3
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 8.5e-22 107.8 75 72.0
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.4e-21 107.1 146 47.3
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 2.5e-21 106.3 149 45.0
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.6e-20 103.6 132 47.7
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 4.7e-20 102.1 93 58.1
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 1.0e-19 100.9 118 44.9
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 3.0e-19 99.4 156 42.3
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.1e-18 97.4 147 35.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 7.4e-18 94.7 105 49.5
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 9.7e-18 94.4 134 46.3
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 9.7e-18 94.4 119 42.0
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 2.2e-17 93.2 151 39.1
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 4.1e-16 89.0 69 63.8
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 6.9e-16 88.2 116 44.0
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 6.9e-16 88.2 149 43.0
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.2e-14 83.2 92 48.9
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 3.2e-13 79.3 157 35.0
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 2.7e-12 76.3 136 37.5
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 3.0e-11 72.8 99 42.4
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 6.7e-11 71.6 156 33.3
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 7.4e-10 68.2 43 74.4
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.3e-09 67.4 50 68.0
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 3.1e-08 62.8 90 41.1
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.2e-07 60.8 144 33.3
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 1.6e-07 60.5 93 36.6
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 3.5e-07 59.3 88 42.0
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 1.3e-06 57.4 140 33.6
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.3e-06 57.4 71 42.3
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-06 57.0 46 58.7
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.7e-06 57.0 90 41.1


User provided reference genes

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