Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1286 Acer truncatum HOM05D001816 ORTHO05D026252 7.1e-51 203.8 112 100.0
Atru.chr2.1588 Acer truncatum HOM05D001816 ORTHO05D026252 1.8e-49 199.1 112 98.2
Atru.chr6.1842 Acer truncatum HOM05D005012 ORTHO05D005886 1.4e-14 83.2 54 81.5
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 1.2e-13 80.1 67 70.1
Atru.chr1.3691 Acer truncatum HOM05D005012 ORTHO05D005886 3.5e-13 78.6 41 97.6
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 1.7e-12 76.3 61 65.6
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 8.5e-12 73.9 52 67.3
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 1.9e-11 72.8 45 73.3
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 2.5e-11 72.4 43 79.1
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 4.2e-11 71.6 56 66.1
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 4.2e-11 71.6 56 66.1
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 7.2e-11 70.9 45 71.1
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 9.4e-11 70.5 43 76.7
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 9.4e-11 70.5 43 76.7
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 9.4e-11 70.5 48 70.8
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 1.2e-10 70.1 44 70.5
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.2e-10 70.1 43 76.7
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 2.1e-10 69.3 43 72.1
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 2.1e-10 69.3 43 74.4
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 2.7e-10 68.9 43 76.7
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 3.6e-10 68.6 43 74.4
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 3.6e-10 68.6 43 74.4
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 3.6e-10 68.6 47 66.0
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 3.6e-10 68.6 45 68.9
MELO3C027271.2 Cucumis melo HOM05D001816 ORTHO05D026252 4.7e-10 68.2 55 63.6
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 4.7e-10 68.2 43 74.4
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 4.7e-10 68.2 43 72.1
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 4.7e-10 68.2 43 72.1
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 4.7e-10 68.2 43 72.1
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 6.1e-10 67.8 43 74.4
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 6.1e-10 67.8 43 74.4
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 6.1e-10 67.8 43 74.4
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 6.1e-10 67.8 43 69.8
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 8.0e-10 67.4 43 72.1
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 8.0e-10 67.4 43 72.1
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 8.0e-10 67.4 43 72.1
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.0e-09 67.0 43 72.1
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 1.0e-09 67.0 48 64.6
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 1.0e-09 67.0 53 64.2
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 1.4e-09 66.6 100 45.0
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 1.4e-09 66.6 62 58.1
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 1.8e-09 66.2 87 47.1
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.8e-09 66.2 41 73.2
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 1.8e-09 66.2 43 67.4
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 1.8e-09 66.2 43 67.4
GSVIVG01024313001 Vitis vinifera HOM05D001816 ORTHO05D002001 1.8e-09 66.2 43 67.4
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 2.3e-09 65.9 72 52.8
Cpa.g.c38643 Carica papaya HOM05D001816 ORTHO05D026252 2.3e-09 65.9 53 62.3
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.3e-09 65.9 43 69.8
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 2.3e-09 65.9 47 63.8
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 2.3e-09 65.9 87 49.4
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 3.0e-09 65.5 43 67.4
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 3.0e-09 65.5 48 64.6
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 4.0e-09 65.1 43 69.8
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 4.0e-09 65.1 43 69.8
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 4.0e-09 65.1 43 69.8
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 4.0e-09 65.1 67 52.2
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 4.0e-09 65.1 50 64.0
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 5.2e-09 64.7 48 64.6
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 5.2e-09 64.7 48 62.5
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 5.2e-09 64.7 48 62.5
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 5.2e-09 64.7 43 67.4
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 5.2e-09 64.7 43 67.4
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 5.2e-09 64.7 41 73.2
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 5.2e-09 64.7 41 73.2
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 5.2e-09 64.7 43 67.4
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 6.8e-09 64.3 43 67.4
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 6.8e-09 64.3 57 56.1
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 6.8e-09 64.3 45 60.0
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 8.8e-09 63.9 48 62.5
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 8.8e-09 63.9 48 62.5
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 8.8e-09 63.9 48 62.5
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 8.8e-09 63.9 48 62.5
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 8.8e-09 63.9 43 67.4
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 8.8e-09 63.9 72 50.0
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 8.8e-09 63.9 43 65.1
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 8.8e-09 63.9 50 58.0
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 8.8e-09 63.9 44 65.9
Glyma.12G027800 Glycine max HOM05D001816 ORTHO05D002001 1.2e-08 63.5 93 45.2
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.2e-08 63.5 43 67.4
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 1.2e-08 63.5 43 69.8
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 1.5e-08 63.2 72 51.4
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 1.5e-08 63.2 67 50.7
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 1.5e-08 63.2 79 41.8
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 1.5e-08 63.2 56 55.4
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.5e-08 63.2 43 67.4
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 2.0e-08 62.8 43 62.8
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 2.0e-08 62.8 48 62.5
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 2.0e-08 62.8 71 52.1
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 2.0e-08 62.8 71 52.1
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 2.0e-08 62.8 71 52.1
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 2.0e-08 62.8 71 52.1
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 2.0e-08 62.8 43 65.1
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 2.0e-08 62.8 45 57.8
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 2.0e-08 62.8 48 58.3
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.6e-08 62.4 84 46.4
PSO063G5047 Papaver somniferum HOM05D001816 ORTHO05D002001 2.6e-08 62.4 45 57.8
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 2.6e-08 62.4 74 50.0
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 3.4e-08 62.0 43 65.1
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 3.4e-08 62.0 48 60.4
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 3.4e-08 62.0 43 65.1
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 3.4e-08 62.0 93 44.1
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 3.4e-08 62.0 43 65.1
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 3.4e-08 62.0 48 56.2
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 4.4e-08 61.6 80 47.5
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 4.4e-08 61.6 77 46.8
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 4.4e-08 61.6 43 60.5
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 4.4e-08 61.6 71 50.7
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 4.4e-08 61.6 71 50.7
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 4.4e-08 61.6 48 60.4
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 4.4e-08 61.6 43 65.1
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 4.4e-08 61.6 88 42.0
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 5.7e-08 61.2 46 63.0
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 5.7e-08 61.2 43 65.1
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 5.7e-08 61.2 87 47.1
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 7.5e-08 60.8 43 62.8
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 7.5e-08 60.8 43 62.8
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 7.5e-08 60.8 43 62.8
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 7.5e-08 60.8 45 64.4
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 7.5e-08 60.8 84 45.2
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 7.5e-08 60.8 43 60.5
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 7.5e-08 60.8 60 55.0
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 1.3e-07 60.1 61 54.1
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 1.3e-07 60.1 43 60.5
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 2.2e-07 59.3 72 50.0
Cc11_g00060 Coffea canephora HOM05D001816 ORTHO05D002001 2.2e-07 59.3 43 62.8
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 2.2e-07 59.3 40 65.0
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 2.8e-07 58.9 43 62.8
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 3.7e-07 58.5 99 41.4
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 3.7e-07 58.5 48 56.2
Sc06g0002420 Simmondsia chinensis HOM05D001816 ORTHO05D002001 4.8e-07 58.2 44 63.6
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 8.3e-07 57.4 67 49.3
SEGI_04403 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 1.4e-06 56.6 45 53.3
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 1.4e-06 56.6 45 55.6
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-06 56.2 99 38.4
Potri.007G070250 Populus trichocarpa HOM05D001816 ORTHO05D002001 1.8e-06 56.2 43 72.1
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 2.4e-06 55.8 99 38.4
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 7.0e-06 54.3 43 60.5


User provided reference genes

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