Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 1.0e-249 866.3 436 100.0
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 7.5e-213 743.8 464 80.8
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 1.2e-210 736.5 464 79.5
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 1.6e-210 736.1 465 80.4
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 1.6e-210 736.1 464 80.2
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 4.5e-210 734.6 464 79.7
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 5.9e-210 734.2 464 80.0
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 1.0e-209 733.4 464 79.7
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 1.3e-209 733.0 464 80.2
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 1.7e-209 732.6 464 79.3
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 1.7e-209 732.6 464 79.5
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 2.2e-209 732.3 464 79.5
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 6.5e-209 730.7 464 78.9
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 8.5e-209 730.3 464 79.3
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 1.5e-208 729.6 465 80.0
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 1.5e-208 729.6 464 79.1
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 3.2e-208 728.4 463 79.7
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 4.2e-208 728.0 465 79.4
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 4.2e-208 728.0 466 79.6
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 5.5e-208 727.6 464 78.7
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.2e-207 726.5 464 79.1
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.6e-207 726.1 464 78.9
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 3.6e-207 724.9 466 78.8
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 3.6e-207 724.9 464 78.4
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 3.6e-207 724.9 464 78.7
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 8.0e-207 723.8 466 78.5
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 8.0e-207 723.8 464 78.9
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 3.0e-206 721.8 464 78.0
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 5.2e-206 721.1 470 77.7
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 2.0e-205 719.2 464 77.4
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 2.0e-205 719.2 464 78.9
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 3.4e-205 718.4 464 78.7
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 3.4e-205 718.4 464 78.0
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 3.4e-205 718.4 464 77.2
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 9.8e-205 716.8 464 78.9
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 1.3e-204 716.5 464 77.8
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 1.3e-204 716.5 486 76.5
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 1.3e-204 716.5 486 76.5
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 1.3e-204 716.5 465 78.7
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.7e-204 716.1 464 78.0
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 2.2e-204 715.7 462 78.6
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 2.8e-204 715.3 465 78.3
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 2.8e-204 715.3 464 77.8
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 3.7e-204 714.9 464 77.8
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 1.1e-203 713.4 467 77.5
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 1.4e-203 713.0 464 77.8
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 1.4e-203 713.0 466 78.3
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 1.8e-203 712.6 464 77.6
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 3.1e-203 711.8 464 78.0
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 4.1e-203 711.4 464 78.0
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 4.1e-203 711.4 464 76.9
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 4.1e-203 711.4 468 76.7
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 7.0e-203 710.7 464 78.2
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 7.0e-203 710.7 465 77.0
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 1.2e-202 709.9 466 77.7
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 1.2e-202 709.9 491 74.3
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.2e-202 709.9 464 77.8
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 1.6e-202 709.5 454 78.6
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 5.9e-202 707.6 469 76.5
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 5.9e-202 707.6 465 77.4
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 7.7e-202 707.2 464 77.6
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 1.0e-201 706.8 464 76.5
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 1.7e-201 706.1 464 76.7
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 2.3e-201 705.7 466 76.6
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 2.9e-201 705.3 464 77.6
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 3.8e-201 704.9 464 76.5
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 1.1e-200 703.4 464 75.6
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 1.5e-200 703.0 465 77.0
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 1.5e-200 703.0 463 76.9
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 1.9e-200 702.6 464 76.5
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 1.9e-200 702.6 465 77.0
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 2.5e-200 702.2 468 76.5
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 3.3e-200 701.8 464 76.3
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 4.2e-200 701.4 467 77.7
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 7.2e-200 700.7 466 76.2
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 9.5e-200 700.3 466 76.8
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 9.5e-200 700.3 467 76.7
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 1.2e-199 699.9 464 76.5
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 1.2e-199 699.9 464 76.1
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 1.2e-199 699.9 464 76.3
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 2.1e-199 699.1 466 76.2
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 3.6e-199 698.4 464 76.1
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 3.6e-199 698.4 467 76.7
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 6.1e-199 697.6 464 75.6
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 6.1e-199 697.6 464 76.7
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 8.0e-199 697.2 466 76.6
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 1.0e-198 696.8 465 77.2
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 1.0e-198 696.8 464 75.9
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 1.8e-198 696.0 464 75.6
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 2.3e-198 695.7 464 75.6
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 4.0e-198 694.9 464 75.6
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 6.8e-198 694.1 464 75.4
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 6.8e-198 694.1 466 77.0
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 1.2e-197 693.3 464 75.4
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 2.0e-197 692.6 464 76.5
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 4.4e-197 691.4 463 76.2
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 7.5e-197 690.6 464 75.6
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 1.7e-196 689.5 467 75.4
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 3.7e-196 688.3 465 74.8
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 4.9e-196 688.0 466 75.3
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 6.3e-196 687.6 467 75.2
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 8.3e-196 687.2 465 75.5
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 1.8e-195 686.0 397 88.7
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 4.1e-195 684.9 468 73.9
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 5.4e-195 684.5 464 75.0
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 2.7e-194 682.2 466 76.0
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 3.5e-194 681.8 464 75.0
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 1.0e-193 680.2 465 74.8
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 5.0e-193 677.9 464 74.4
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 4.3e-192 674.9 466 74.2
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 9.5e-192 673.7 467 74.3
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 1.6e-191 672.9 474 71.9
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 1.8e-190 669.5 464 73.5
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 1.8e-190 669.5 545 66.2
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 2.6e-189 665.6 461 73.8
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 2.2e-188 662.5 469 72.3
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 3.7e-188 661.8 444 75.9
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 5.4e-187 657.9 500 69.4
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 1.9e-184 649.4 480 70.6
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 1.4e-179 633.3 464 71.3
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 5.8e-173 611.3 464 67.7
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 1.7e-172 609.8 411 74.2
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.6e-170 603.2 426 72.1
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 3.5e-170 602.1 463 67.6
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.2e-165 587.0 397 75.3
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.4e-165 585.1 397 75.1
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 2.2e-164 582.8 457 64.6
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.9e-160 569.7 470 63.4
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 3.5e-154 548.9 358 77.9
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 7.3e-152 541.2 342 79.5
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 2.3e-137 493.0 318 78.6
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 2.5e-120 436.4 394 57.6
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 1.0e-113 414.5 426 51.9
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 8.8e-105 384.8 374 55.3
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 4.5e-101 372.5 263 72.2
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.4e-96 356.3 217 82.0
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.7e-84 317.4 253 66.8
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 4.0e-73 279.6 163 85.3
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 4.4e-40 169.9 270 38.9
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 3.8e-39 166.8 143 62.2
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 9.3e-38 162.2 130 65.4
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 2.1e-37 161.0 124 68.5
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 7.9e-29 132.5 289 32.9
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 7.9e-29 132.5 66 93.9
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 7.9e-29 132.5 66 93.9
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 7.4e-27 125.9 72 80.6
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 3.7e-26 123.6 71 83.1
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 4.5e-24 116.7 177 43.5
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 1.9e-22 111.3 69 73.9
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 2.5e-19 100.9 73 71.2
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.7e-18 97.1 75 66.7
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.1e-17 94.0 75 64.0
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 2.2e-15 87.8 68 60.3
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 7.2e-14 82.8 47 83.0
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 1.6e-13 81.6 49 87.8
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.3e-12 78.6 203 31.0
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 9.7e-11 72.4 40 85.0
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.3e-10 72.0 43 74.4
PSO832G0757 Papaver somniferum HOM05D004298 ORTHO05D303626 7.2e-06 56.2 31 87.1


User provided reference genes

Program Settings