Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 2.9e-177 625.2 326 100.0
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 6.4e-177 624.0 326 99.7
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.0e-121 440.7 327 68.2
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 3.6e-119 432.2 325 68.0
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 4.9e-116 421.8 329 65.7
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 5.4e-115 418.3 329 65.0
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.5e-109 400.2 329 61.4
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 1.7e-108 396.7 328 60.1
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 2.9e-108 396.0 327 60.9
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 3.7e-108 395.6 323 61.3
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 5.4e-107 391.7 328 59.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.6e-106 390.2 329 63.2
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 6.0e-106 388.3 326 59.5
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 6.0e-106 388.3 327 60.2
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 6.0e-106 388.3 385 55.1
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 6.0e-106 388.3 325 64.0
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 7.8e-106 387.9 330 62.7
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 7.8e-106 387.9 328 61.0
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 7.8e-106 387.9 329 61.4
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 1.0e-105 387.5 325 61.5
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 3.9e-105 385.6 324 60.8
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 1.5e-104 383.6 326 59.5
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.5e-104 383.6 327 59.3
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 3.3e-104 382.5 323 61.3
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 4.3e-104 382.1 326 58.0
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 4.3e-104 382.1 327 59.0
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.6e-103 380.2 325 60.3
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 2.8e-103 379.4 325 58.8
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 2.8e-103 379.4 329 61.1
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 1.8e-102 376.7 327 59.3
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 6.8e-102 374.8 263 68.1
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 2.0e-101 373.2 325 60.3
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 9.8e-101 370.9 327 59.6
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 9.8e-101 370.9 327 59.6
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 9.8e-101 370.9 263 68.4
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 9.8e-101 370.9 328 58.2
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 2.9e-100 369.4 331 56.8
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 3.2e-99 365.9 260 66.2
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 5.4e-99 365.2 277 63.9
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 1.6e-98 363.6 328 57.9
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 2.0e-98 363.2 329 58.4
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 2.7e-98 362.8 272 64.0
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 4.6e-98 362.1 263 66.5
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 6.0e-98 361.7 236 70.8
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.0e-98 361.7 272 65.1
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 6.0e-98 361.7 271 64.2
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 7.8e-98 361.3 261 65.5
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 3.0e-97 359.4 260 65.0
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.0e-97 359.4 322 58.4
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 3.9e-97 359.0 324 56.8
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 3.9e-97 359.0 324 57.1
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 3.9e-97 359.0 324 57.1
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 6.6e-97 358.2 324 58.0
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 6.6e-97 358.2 324 58.0
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 1.5e-96 357.1 271 63.8
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 2.5e-96 356.3 329 58.1
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 3.3e-96 355.9 327 56.0
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 3.3e-96 355.9 327 56.0
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 5.6e-96 355.1 329 55.3
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 5.6e-96 355.1 260 64.6
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 7.3e-96 354.8 271 63.5
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 7.3e-96 354.8 261 64.8
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 7.3e-96 354.8 382 52.1
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 1.2e-95 354.0 327 60.2
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.2e-95 354.0 273 63.4
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 2.8e-95 352.8 272 63.6
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 3.6e-95 352.4 326 57.1
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 3.6e-95 352.4 272 63.6
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 6.2e-95 351.7 260 64.6
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 1.1e-94 350.9 272 64.7
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 1.8e-94 350.1 260 63.8
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.8e-94 350.1 260 63.5
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 3.1e-94 349.4 332 55.1
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 6.8e-94 348.2 272 61.0
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 1.5e-93 347.1 325 57.5
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 2.0e-93 346.7 264 64.8
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.6e-93 346.3 328 55.2
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 4.4e-93 345.5 326 56.7
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 7.5e-93 344.7 211 76.3
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 6.4e-92 341.7 330 55.2
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 1.1e-91 340.9 325 55.1
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 7.1e-91 338.2 270 57.8
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.6e-90 337.0 327 54.4
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 3.5e-90 335.9 264 63.3
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 4.6e-90 335.5 263 59.3
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 4.6e-90 335.5 347 48.7
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.9e-88 330.1 348 48.6
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.9e-88 330.1 348 48.6
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 7.3e-88 328.2 327 54.1
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 9.5e-88 327.8 262 58.0
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 9.5e-88 327.8 348 48.6
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 2.8e-87 326.2 327 59.3
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 8.1e-87 324.7 271 57.2
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.1e-86 324.3 272 57.7
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.4e-86 323.9 268 55.6
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 5.2e-86 322.0 319 53.3
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 6.8e-86 321.6 275 56.0
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 8.9e-86 321.2 264 57.2
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 2.0e-85 320.1 211 72.5
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 5.8e-85 318.5 351 54.7
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 5.8e-85 318.5 349 46.1
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 7.6e-85 318.2 271 57.6
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 2.2e-84 316.6 236 64.4
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 2.1e-82 310.1 363 45.7
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 6.6e-81 305.1 220 67.3
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.6e-77 291.6 211 67.3
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 2.1e-74 283.5 281 53.7
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 4.8e-71 272.3 280 52.1
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 3.4e-69 266.2 323 44.6
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.3e-60 237.7 211 54.5
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 8.4e-60 235.0 350 38.9
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 1.9e-59 233.8 227 53.3
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 1.9e-59 233.8 227 53.3
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 4.2e-59 232.6 264 48.5
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 3.5e-58 229.6 242 50.4
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 2.5e-56 223.4 232 51.3
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 8.2e-55 218.4 245 49.0
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.4e-51 207.6 272 40.8
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 1.9e-48 197.2 207 52.2
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.9e-48 197.2 232 42.2
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 6.3e-47 192.2 328 38.4
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.7e-44 184.1 200 55.0
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 6.5e-44 182.2 223 47.5
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 5.1e-41 172.6 235 42.1
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 5.1e-41 172.6 272 40.4
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 6.7e-41 172.2 232 39.2
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 7.7e-37 158.7 205 45.9
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.3e-36 157.9 169 51.5
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 2.9e-36 156.8 189 47.6
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 2.1e-34 150.6 211 45.0
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 4.7e-34 149.4 113 60.2
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 1.0e-33 148.3 202 38.1
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.4e-33 147.9 111 65.8
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.3e-25 120.6 97 54.6
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 2.2e-23 114.0 268 30.2
Cfa026181 Carpinus fangiana HOM05D002398 ORTHO05D000038 9.7e-16 88.6 232 25.9
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.1e-14 85.1 195 27.2
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 6.5e-12 75.9 189 29.1
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.5e-11 73.9 117 41.0
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 1.7e-07 61.2 43 58.1


User provided reference genes

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