Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.159 Acer truncatum HOM05D006623 ORTHO05D008102 1.1e-189 666.4 327 100.0
Atru.chr2.158 Acer truncatum HOM05D006623 ORTHO05D008102 1.0e-121 440.7 218 98.6
Ciclev10001637m.g Citrus clementina HOM05D006623 ORTHO05D008102 2.1e-103 379.8 221 82.8
RcHm_v2.0_Chr3g0456981 Rosa chinensis HOM05D006623 ORTHO05D008102 4.7e-103 378.6 221 80.5
Haze_04070 Corylus avellana HOM05D006623 ORTHO05D008102 3.1e-102 375.9 218 80.7
Cfa006696 Carpinus fangiana HOM05D006623 ORTHO05D008102 5.2e-102 375.2 218 80.3
Prupe.6G313700 Prunus persica HOM05D006623 ORTHO05D008102 5.2e-102 375.2 218 82.1
MD12G1206400 Malus domestica HOM05D006623 ORTHO05D008102 6.8e-102 374.8 217 81.6
CiPaw.07G029000 Carya illinoinensis HOM05D006623 ORTHO05D008102 1.2e-101 374.0 222 80.2
Potri.013G009300 Populus trichocarpa HOM05D006623 ORTHO05D008102 2.4e-99 366.3 212 83.0
Manes.09G176400 Manihot esculenta HOM05D006623 ORTHO05D008102 4.1e-99 365.5 213 82.6
CSS0001336 Camellia sinensis var. sinensis HOM05D006623 ORTHO05D008102 1.2e-98 364.0 220 78.6
Cpa.g.sc48.154 Carica papaya HOM05D006623 ORTHO05D008102 2.1e-98 363.2 218 78.9
FAN02G4416 Fragaria x ananassa HOM05D006623 ORTHO05D008102 4.6e-98 362.1 223 77.1
CSS0040730 Camellia sinensis var. sinensis HOM05D006623 ORTHO05D008102 7.8e-98 361.3 220 78.2
FAN14G0013 Fragaria x ananassa HOM05D000518 ORTHO05D000737 1.0e-97 360.9 249 71.5
Sabra13G0007900 Salix brachista HOM05D006623 ORTHO05D008102 3.0e-97 359.4 211 82.5
FvH4_6g07380 Fragaria vesca HOM05D006623 ORTHO05D008102 3.9e-97 359.0 224 76.8
TAR362G0438 Trochodendron aralioides HOM05D006623 ORTHO05D008102 3.9e-97 359.0 218 77.5
FAN09G0918 Fragaria x ananassa HOM05D006623 ORTHO05D008102 1.1e-96 357.5 244 71.3
FAN05G4235 Fragaria x ananassa HOM05D006623 ORTHO05D008102 1.9e-96 356.7 221 77.8
QL03p013461 Quercus lobata HOM05D006623 ORTHO05D008102 1.9e-96 356.7 212 79.2
QL03p040046 Quercus lobata HOM05D006623 ORTHO05D008102 1.9e-96 356.7 212 79.2
Duzib177G0147 Durio zibethinus HOM05D006623 ORTHO05D008102 9.6e-96 354.4 221 76.9
Rhsim05G0132300 Rhododendron simsii HOM05D006623 ORTHO05D008102 4.0e-94 349.0 221 76.5
Thecc.05G322000 Theobroma cacao HOM05D006623 ORTHO05D008102 1.2e-93 347.4 221 76.0
CANSAT54G2068 Cannabis sativa HOM05D006623 ORTHO05D008102 2.0e-93 346.7 218 74.3
Lju926C10T1 Lonicera japonica HOM05D006623 ORTHO05D008102 2.6e-93 346.3 217 78.3
PGSC0003DMG400002774 Solanum tuberosum HOM05D006623 ORTHO05D008102 2.2e-92 343.2 217 75.1
Gohir.D08G223000 Gossypium hirsutum HOM05D006623 ORTHO05D008102 2.9e-92 342.8 222 73.9
Gohir.A08G206200 Gossypium hirsutum HOM05D006623 ORTHO05D008102 6.4e-92 341.7 222 73.0
Gorai.004G236900 Gossypium raimondii HOM05D006623 ORTHO05D008102 6.4e-92 341.7 222 73.4
Eucgr.L00270 Eucalyptus grandis HOM05D006623 ORTHO05D008102 5.4e-91 338.6 213 75.6
Sopen01g043920 Solanum pennellii HOM05D006623 ORTHO05D008102 5.4e-91 338.6 217 75.1
PSO170G4056 Papaver somniferum HOM05D006623 ORTHO05D008102 7.1e-91 338.2 217 74.2
Solyc01g100400.3 Solanum lycopersicum HOM05D006623 ORTHO05D008102 7.1e-91 338.2 217 74.7
COL.COLO4_04154 Corchorus olitorius HOM05D006623 ORTHO05D008102 9.3e-91 337.8 209 78.5
MELO3C004192.2 Cucumis melo HOM05D006623 ORTHO05D008102 1.2e-90 337.4 226 69.5
GSVIVG01031231001 Vitis vinifera HOM05D006623 ORTHO05D008102 1.2e-90 337.4 210 75.7
PSO357G0307 Papaver somniferum HOM05D006623 ORTHO05D008102 2.7e-90 336.3 224 71.0
Hund07141 Selenicereus undatus HOM05D006623 ORTHO05D008102 4.6e-90 335.5 227 70.5
Cc02_g34940 Coffea canephora HOM05D006623 ORTHO05D008102 6.0e-90 335.1 218 72.9
CAN.G1715.8 Capsicum annuum HOM05D006623 ORTHO05D008102 7.8e-90 334.7 221 72.4
Oeu041540.1 Olea europaea HOM05D006623 ORTHO05D008102 7.8e-90 334.7 218 72.5
Nn3g21680 Nelumbo nucifera HOM05D006623 ORTHO05D008102 2.3e-89 333.2 212 74.1
Lsat_1_v5_gn_7_74540 Lactuca sativa HOM05D006623 ORTHO05D008102 3.0e-89 332.8 220 72.3
Peaxi162Scf00673g00027 Petunia axillaris HOM05D006623 ORTHO05D008102 3.0e-89 332.8 215 73.0
CsaV3_2G007010 Cucumis sativus L. HOM05D006623 ORTHO05D008102 1.5e-88 330.5 218 71.6
Aqoxy1G01536 Aquilegia oxysepala HOM05D006623 ORTHO05D008102 1.9e-88 330.1 212 74.1
MBI18_g31673_MAGBIO Magnolia biondii HOM05D006623 ORTHO05D008102 3.3e-88 329.3 232 67.2
Nitab4.5_0000368g0170 Nicotiana tabacum HOM05D006623 ORTHO05D008102 5.6e-88 328.6 217 72.8
Nitab4.5_0011526g0010 Nicotiana tabacum HOM05D006623 ORTHO05D008102 5.6e-88 328.6 214 73.4
ClCG02G014990 Citrullus lanatus HOM05D006623 ORTHO05D008102 7.3e-88 328.2 218 71.6
ECA236G3720 Erigeron canadensis HOM05D006623 ORTHO05D008102 1.3e-87 327.4 221 69.7
Sc16g0009010 Simmondsia chinensis HOM05D006623 ORTHO05D008102 3.1e-86 322.8 219 69.9
Phvul.007G200900 Phaseolus vulgaris HOM05D006623 ORTHO05D008102 5.3e-86 322.0 211 72.5
VMungo0720G1791 Vigna mungo HOM05D006623 ORTHO05D008102 5.3e-86 322.0 211 73.5
DCAR_005418 Daucus carota HOM05D006623 ORTHO05D008102 6.9e-86 321.6 220 70.9
Psat6g152160 Pisum sativum HOM05D006623 ORTHO05D008102 2.0e-85 320.1 212 70.8
Medtr1g083995 Medicago truncatula HOM05D006623 ORTHO05D008102 4.4e-85 318.9 215 70.7
Sed0005688 Sechium edule HOM05D006623 ORTHO05D008102 5.8e-85 318.5 215 71.2
HanXRQChr04g0096321 Helianthus annuus HOM05D006623 ORTHO05D008102 7.6e-85 318.2 223 68.6
CDE01G0410 Ceratophyllum demersum HOM05D006623 ORTHO05D008102 9.9e-85 317.8 216 69.0
AUR62000672 Chenopodium quinoa HOM05D006623 ORTHO05D008102 1.3e-84 317.4 223 68.6
Os12g0560500 Oryza sativa ssp. japonica HOM05D006623 ORTHO05D008102 1.3e-84 317.4 222 68.9
HanXRQChr11g0347231 Helianthus annuus HOM05D006623 ORTHO05D008102 1.7e-84 317.0 218 69.7
MSTRG.20386 Avicennia marina HOM05D006623 ORTHO05D008102 6.4e-84 315.1 217 70.5
Glyma.20G098200 Glycine max HOM05D006623 ORTHO05D008102 6.4e-84 315.1 213 70.9
AUR62005281 Chenopodium quinoa HOM05D006623 ORTHO05D008102 4.2e-83 312.4 223 68.2
arahy.Tifrunner.gnm1.ann1.CF3I4Q Arachis hypogaea HOM05D006623 ORTHO05D008102 5.4e-83 312.0 227 68.3
EL10Ac4g09820 Beta vulgaris HOM05D006623 ORTHO05D008102 1.6e-82 310.5 215 71.6
Lj5g0012217 Lotus japonicus HOM05D006623 ORTHO05D008102 2.1e-82 310.1 228 68.0
SGA_v2.0_scaffold53G19299 Striga asiatica HOM05D006623 ORTHO05D008102 2.7e-82 309.7 222 67.1
Lalb_Chr02g0147841 Lupinus albus HOM05D006623 ORTHO05D008102 3.5e-82 309.3 221 67.0
arahy.Tifrunner.gnm1.ann1.WHE5ZB Arachis hypogaea HOM05D006623 ORTHO05D008102 4.6e-82 308.9 227 68.3
SalBow7G0710 Salvia bowleyana HOM05D006623 ORTHO05D008102 1.7e-81 307.0 200 72.5
Ca_10167_v3 Cicer arietinum L. HOM05D006623 ORTHO05D008102 3.9e-81 305.8 229 65.5
AL1G65970 Arabidopsis lyrata HOM05D006623 ORTHO05D008102 2.1e-79 300.1 213 69.0
Migut.B00980 Erythranthe guttata HOM05D006623 ORTHO05D008102 2.8e-79 299.7 218 67.0
Zm00001eb137040 Zea mays HOM05D006623 ORTHO05D008102 6.2e-79 298.5 213 68.5
unitig_37.g12622 Utricularia gibba HOM05D006623 ORTHO05D008102 8.1e-79 298.1 215 65.1
ATR0706G205 Amborella trichopoda HOM05D006623 ORTHO05D008102 1.1e-78 297.7 211 67.8
Thhalv10023586m.g Eutrema salsugineum HOM05D006623 ORTHO05D008102 4.0e-78 295.8 217 67.3
Dinv30881 Davidia involucrata HOM05D006623 ORTHO05D008102 7.6e-77 291.6 220 65.9
AT1G56345 Arabidopsis thaliana HOM05D006623 ORTHO05D008102 9.9e-77 291.2 211 67.8
Sp2g06490 Schrenkiella parvula HOM05D006623 ORTHO05D008102 9.9e-77 291.2 210 69.0
BcaC02g10735 Brassica carinata HOM05D006623 ORTHO05D008102 1.7e-76 290.4 213 69.5
C04p27160 Brassica napus HOM05D006623 ORTHO05D008102 1.7e-76 290.4 213 69.5
BolC4t24074H Brassica oleracea HOM05D006623 ORTHO05D008102 1.7e-76 290.4 213 69.5
A03p66650 Brassica napus HOM05D006623 ORTHO05D008102 4.9e-76 288.9 212 68.4
BraA03t15723Z Brassica rapa HOM05D006623 ORTHO05D008102 6.4e-76 288.5 212 67.9
CARHR055360 Cardamine hirsuta HOM05D006623 ORTHO05D008102 8.4e-76 288.1 213 65.7
BcaC06g31770 Brassica carinata HOM05D006623 ORTHO05D008102 2.4e-75 286.6 214 68.2
THA.LOC104820665 Tarenaya hassleriana HOM05D006623 ORTHO05D008102 4.2e-75 285.8 212 67.5
Aa31LG2G11510 Aethionema arabicum HOM05D006623 ORTHO05D008102 2.7e-74 283.1 212 65.6
Actinidia01513 Actinidia chinensis HOM05D006623 ORTHO05D008102 4.6e-74 282.3 177 76.8
Carub.0002s0780 Capsella rubella HOM05D006623 ORTHO05D008102 6.0e-74 282.0 214 65.4
HPP92_014540 Vanilla planifolia HOM05D006623 ORTHO05D008102 1.5e-72 277.3 229 56.8
Ah.06g188850 Amaranthus hybridus HOM05D006623 ORTHO05D008102 2.8e-71 273.1 213 61.5
SHI18063 Sapria himalayana HOM05D006623 ORTHO05D008102 1.2e-66 257.7 216 58.8
Pp3c21_14480 Physcomitrium patens HOM05D006623 ORTHO05D008102 1.3e-57 227.6 221 51.1
Mapoly0025s0135 Marchantia polymorpha HOM05D006623 ORTHO05D008102 6.3e-55 218.8 247 47.4
MD04G1194000 Malus domestica HOM05D006623 ORTHO05D008102 1.7e-52 210.7 125 77.6
SMO367G1184 Selaginella moellendorffii HOM05D006623 ORTHO05D008102 3.8e-52 209.5 218 48.2
AagrBONN_evm.TU.Sc2ySwM_228.2895 Anthoceros agrestis HOM05D006623 ORTHO05D008102 1.1e-48 198.0 226 43.8
Pp3c22_15420 Physcomitrium patens HOM05D006623 ORTHO05D008102 2.2e-47 193.7 220 45.5
vmacro19792 Vaccinium macrocarpon HOM05D006623 ORTHO05D008102 2.2e-47 193.7 166 57.8
Lj9C221T2 Lonicera japonica HOM05D006623 ORTHO05D008102 1.8e-41 174.1 158 60.8
CBR_g631 Chara braunii HOM05D006623 ORTHO05D008102 5.7e-24 115.9 110 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2701 Anthoceros agrestis HOM05D000001 ORTHO05D008102 4.1e-22 109.8 184 36.4
Actinidia01685 Actinidia chinensis HOM05D000518 ORTHO05D000737 1.2e-18 98.2 93 53.8
MD04G1193800 Malus domestica HOM05D006623 ORTHO05D008102 1.4e-17 94.7 59 74.6
VMungo1228G0002 Vigna mungo HOM05D006623 ORTHO05D008102 2.3e-17 94.0 102 45.1
vmacro19739 Vaccinium macrocarpon HOM05D006623 ORTHO05D008102 6.8e-17 92.4 54 77.8
MCO07G190 Micromonas commoda HOM05D006623 ORTHO05D008102 8.3e-15 85.5 267 29.2
PRCOL_00002894 Prasinoderma coloniale HOM05D006623 ORTHO05D008102 1.3e-12 78.2 212 30.2
Hund05155 Selenicereus undatus HOM05D007020 ORTHO05D008935 8.9e-09 65.5 222 27.0
PSO170G4315 Papaver somniferum HOM05D007020 ORTHO05D008935 1.5e-08 64.7 242 25.6
SMO169G0131 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 1.5e-08 64.7 225 26.7
Potri.002G016800 Populus trichocarpa HOM05D007020 ORTHO05D008935 2.0e-08 64.3 223 25.6
CDE09G0276 Ceratophyllum demersum HOM05D006791 ORTHO05D008221 3.4e-08 63.5 252 27.8
Cpa.g.sc26.268 Carica papaya HOM05D007020 ORTHO05D008935 5.7e-08 62.8 223 24.7
Migut.C00895 Erythranthe guttata HOM05D007020 ORTHO05D008935 7.5e-08 62.4 224 24.6
TAR376G1009 Trochodendron aralioides HOM05D007020 ORTHO05D008935 7.5e-08 62.4 222 25.7
TAR633G1459 Trochodendron aralioides HOM05D007020 ORTHO05D008935 7.5e-08 62.4 222 25.2
Lj4A801T43 Lonicera japonica HOM05D007020 ORTHO05D008935 9.8e-08 62.0 218 28.0
Pp3c21_5880 Physcomitrium patens HOM05D007020 ORTHO05D008935 9.8e-08 62.0 211 26.5
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 9.8e-08 62.0 202 26.2
THA.LOC104809629 Tarenaya hassleriana HOM05D007020 ORTHO05D008935 9.8e-08 62.0 222 24.3
Nitab4.5_0003030g0130 Nicotiana tabacum HOM05D007020 ORTHO05D008935 1.3e-07 61.6 237 26.6
CAN.G311.66 Capsicum annuum HOM05D007020 ORTHO05D008935 1.7e-07 61.2 249 26.5
Sabra02G0013400 Salix brachista HOM05D007020 ORTHO05D008935 1.7e-07 61.2 223 25.1
PGSC0003DMG400009884 Solanum tuberosum HOM05D007020 ORTHO05D008935 1.7e-07 61.2 227 26.9
VMungo0540G0924 Vigna mungo HOM05D006623 ORTHO05D008102 1.7e-07 61.2 38 63.2
Eucgr.F03712 Eucalyptus grandis HOM05D007020 ORTHO05D008935 2.2e-07 60.8 222 27.9
BcaC08g47303 Brassica carinata HOM05D007020 ORTHO05D008935 2.9e-07 60.5 223 26.0
C06p49960 Brassica napus HOM05D007020 ORTHO05D008935 2.9e-07 60.5 223 26.0
BolC6t40035H Brassica oleracea HOM05D007020 ORTHO05D008935 2.9e-07 60.5 223 26.0
HanXRQChr05g0146601 Helianthus annuus HOM05D007020 ORTHO05D008935 2.9e-07 60.5 218 25.2
AT1G76050 Arabidopsis thaliana HOM05D007020 ORTHO05D008935 3.7e-07 60.1 223 26.9
A07p41540 Brassica napus HOM05D007020 ORTHO05D008935 3.7e-07 60.1 223 25.6
BraA07t31686Z Brassica rapa HOM05D007020 ORTHO05D008935 3.7e-07 60.1 223 25.6
Medtr3g114540 Medicago truncatula HOM05D007020 ORTHO05D008935 3.7e-07 60.1 222 25.2
SGA_v2.0_scaffold96G28944 Striga asiatica HOM05D007020 ORTHO05D008935 3.7e-07 60.1 223 23.8
TWI36G0910 Tripterygium wilfordii HOM05D007020 ORTHO05D008935 3.7e-07 60.1 222 26.6
ECA232G4433 Erigeron canadensis HOM05D007020 ORTHO05D008935 4.9e-07 59.7 219 25.6
Thhalv10018588m.g Eutrema salsugineum HOM05D007020 ORTHO05D008935 4.9e-07 59.7 223 26.0
Gohir.D05G186100 Gossypium hirsutum HOM05D007020 ORTHO05D008935 4.9e-07 59.7 222 25.7
PRCOL_00005185 Prasinoderma coloniale HOM05D006623 ORTHO05D008102 4.9e-07 59.7 70 44.3
Ah.11g040270 Amaranthus hybridus HOM05D007020 ORTHO05D008935 6.4e-07 59.3 223 25.1
AL2G36070 Arabidopsis lyrata HOM05D007020 ORTHO05D008935 6.4e-07 59.3 223 26.9
BcaC08g47097 Brassica carinata HOM05D007020 ORTHO05D008935 6.4e-07 59.3 224 26.3
Carub.0002s2293 Capsella rubella HOM05D007020 ORTHO05D008935 6.4e-07 59.3 223 26.0
ClCG08G014040 Citrullus lanatus HOM05D007020 ORTHO05D008935 6.4e-07 59.3 222 26.1
Medtr1g095580 Medicago truncatula HOM05D006791 ORTHO05D008221 8.3e-07 58.9 254 26.4
PSO339G2849 Papaver somniferum HOM05D006791 ORTHO05D008221 1.1e-06 58.5 250 25.2
TPR.G1805 Trifolium pratense HOM05D006791 ORTHO05D008221 1.1e-06 58.5 239 25.5
Haze_22697 Corylus avellana HOM05D007020 ORTHO05D008935 1.4e-06 58.2 223 24.7
Os06g0717400 Oryza sativa ssp. japonica HOM05D007020 ORTHO05D008935 1.4e-06 58.2 222 25.7
QL02p012883 Quercus lobata HOM05D007020 ORTHO05D008935 1.4e-06 58.2 223 24.7
Sc26g0004460 Simmondsia chinensis HOM05D007020 ORTHO05D008935 1.4e-06 58.2 223 25.6
CiPaw.01G274700 Carya illinoinensis HOM05D006791 ORTHO05D008221 1.8e-06 57.8 256 25.4
CsaV3_2G024410 Cucumis sativus L. HOM05D007020 ORTHO05D008935 1.8e-06 57.8 222 24.3
PRCOL_00005352 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 1.8e-06 57.8 221 26.2
MCO01G778 Micromonas commoda HOM05D007020 ORTHO05D008935 2.4e-06 57.4 229 24.5
EL10Ac1g02092 Beta vulgaris HOM05D007020 ORTHO05D008935 3.2e-06 57.0 228 24.6
Psat5g012400 Pisum sativum HOM05D007020 ORTHO05D008935 3.2e-06 57.0 235 23.4
Peaxi162Scf00174g00717 Petunia axillaris HOM05D007020 ORTHO05D008935 4.1e-06 56.6 234 25.6
Phvul.007G093000 Phaseolus vulgaris HOM05D006791 ORTHO05D008221 5.4e-06 56.2 251 25.1
VMungo0720G1069 Vigna mungo HOM05D006791 ORTHO05D008221 5.4e-06 56.2 251 25.1
arahy.Tifrunner.gnm1.ann1.86UM3X Arachis hypogaea HOM05D006791 ORTHO05D008221 7.0e-06 55.8 239 27.2
AUR62013887 Chenopodium quinoa HOM05D007020 ORTHO05D008935 7.0e-06 55.8 222 24.8
VMungo1309G1583 Vigna mungo HOM05D007020 ORTHO05D008935 7.0e-06 55.8 222 24.8
ATR0582G303 Amborella trichopoda HOM05D005705 ORTHO05D007152 9.2e-06 55.5 175 26.9
AUR62036707 Chenopodium quinoa HOM05D007020 ORTHO05D008935 9.2e-06 55.5 222 25.2
PRCOL_00000246 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 9.2e-06 55.5 225 26.2
GSVIVG01008746001 Vitis vinifera HOM05D007020 ORTHO05D008935 9.2e-06 55.5 223 26.5


User provided reference genes

Program Settings