Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1533 Acer truncatum HOM05D002702 ORTHO05D003416 1.8e-64 249.2 133 100.0
Ciclev10019321m.g Citrus clementina HOM05D002702 ORTHO05D003416 9.4e-26 120.6 128 60.2
Actinidia07964 Actinidia chinensis HOM05D002702 ORTHO05D003416 2.0e-20 102.8 126 54.8
GSVIVG01029946001 Vitis vinifera HOM05D002702 ORTHO05D003416 1.3e-19 100.1 129 55.0
PGR031G3358 Punica granatum HOM05D002702 ORTHO05D003416 2.6e-15 85.9 134 49.3
TAR636G0479 Trochodendron aralioides HOM05D002702 ORTHO05D003416 2.2e-14 82.8 92 56.5
PSO210G0347 Papaver somniferum HOM05D002702 ORTHO05D003416 4.9e-14 81.6 130 46.9
Gorai.013G196300 Gossypium raimondii HOM05D002702 ORTHO05D003416 8.3e-14 80.9 113 51.3
Gohir.D13G166200 Gossypium hirsutum HOM05D002702 ORTHO05D003416 1.4e-13 80.1 124 48.4
Potri.001G246100 Populus trichocarpa HOM05D002702 ORTHO05D003416 1.4e-13 80.1 128 46.9
PSO832G1528 Papaver somniferum HOM05D002702 ORTHO05D003416 4.1e-13 78.6 130 46.2
Solyc01g088720.3 Solanum lycopersicum HOM05D002702 ORTHO05D003416 1.6e-12 76.6 114 49.1
arahy.Tifrunner.gnm1.ann1.LW5WEF Arachis hypogaea HOM05D002702 ORTHO05D003416 2.0e-12 76.3 129 47.3
MELO3C015360.2 Cucumis melo HOM05D002702 ORTHO05D003416 2.0e-12 76.3 133 45.9
Sopen01g035560 Solanum pennellii HOM05D002702 ORTHO05D003416 2.0e-12 76.3 114 49.1
Gohir.A13G160900 Gossypium hirsutum HOM05D002702 ORTHO05D003416 2.7e-12 75.9 100 54.0
TWI60G0137 Tripterygium wilfordii HOM05D002702 ORTHO05D003416 2.7e-12 75.9 130 45.4
Gohir.D11G170800 Gossypium hirsutum HOM05D002702 ORTHO05D003416 4.5e-12 75.1 129 49.6
Gorai.007G182800 Gossypium raimondii HOM05D002702 ORTHO05D003416 4.5e-12 75.1 129 49.6
FAN17G2691 Fragaria x ananassa HOM05D002702 ORTHO05D003416 5.9e-12 74.7 132 42.4
Nitab4.5_0000563g0080 Nicotiana tabacum HOM05D002702 ORTHO05D003416 5.9e-12 74.7 129 45.7
Atru.chr2.91 Acer truncatum HOM05D002702 ORTHO05D003416 7.8e-12 74.3 48 81.2
arahy.Tifrunner.gnm1.ann1.9I2R1K Arachis hypogaea HOM05D002702 ORTHO05D003416 7.8e-12 74.3 128 45.3
Gohir.A11G164500 Gossypium hirsutum HOM05D002702 ORTHO05D003416 1.0e-11 73.9 129 49.6
FvH4_4g11810 Fragaria vesca HOM05D002702 ORTHO05D003416 1.3e-11 73.6 122 45.1
FAN12G2138 Fragaria x ananassa HOM05D002702 ORTHO05D003416 3.9e-11 72.0 133 41.4
FAN12G2960 Fragaria x ananassa HOM05D002702 ORTHO05D003416 3.9e-11 72.0 133 41.4
ClCG03G016660 Citrullus lanatus HOM05D002702 ORTHO05D003416 5.0e-11 71.6 118 48.3
Nn7g37357 Nelumbo nucifera HOM05D002702 ORTHO05D003416 5.0e-11 71.6 118 47.5
Oeu057252.1 Olea europaea HOM05D002702 ORTHO05D003416 6.6e-11 71.2 90 51.1
Potri.009G039100 Populus trichocarpa HOM05D002702 ORTHO05D003416 8.6e-11 70.9 127 44.1
Duzib128G1433 Durio zibethinus HOM05D002702 ORTHO05D003416 1.1e-10 70.5 53 69.8
Nitab4.5_0003719g0060 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.1e-10 70.5 109 45.9
Peaxi162Scf00978g00036 Petunia axillaris HOM05D002702 ORTHO05D003416 1.1e-10 70.5 95 48.4
Prupe.1G180700 Prunus persica HOM05D002702 ORTHO05D003416 1.1e-10 70.5 129 44.2
Nitab4.5_0002341g0020 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.5e-10 70.1 115 45.2
THA.LOC104816256 Tarenaya hassleriana HOM05D002702 ORTHO05D003416 1.5e-10 70.1 132 42.4
CAN.G756.30 Capsicum annuum HOM05D002702 ORTHO05D003416 1.9e-10 69.7 129 46.5
Lalb_Chr02g0157411 Lupinus albus HOM05D002702 ORTHO05D003416 1.9e-10 69.7 106 46.2
Ca_04466_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 2.5e-10 69.3 133 42.1
Sabra16G0149300 Salix brachista HOM05D002702 ORTHO05D003416 2.5e-10 69.3 128 43.0
Lj4g0005434 Lotus japonicus HOM05D002702 ORTHO05D003416 3.3e-10 68.9 133 39.1
CSS0039994 Camellia sinensis var. sinensis HOM05D002702 ORTHO05D003416 4.3e-10 68.6 122 45.1
Dinv25037 Davidia involucrata HOM05D002702 ORTHO05D003416 4.3e-10 68.6 45 80.0
FvH4_5g32090 Fragaria vesca HOM05D002702 ORTHO05D003416 7.3e-10 67.8 130 40.0
Aqoxy4G00362 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 1.2e-09 67.0 109 45.9
RcHm_v2.0_Chr4g0409121 Rosa chinensis HOM05D002702 ORTHO05D003416 1.2e-09 67.0 121 40.5
Thecc.05G241000 Theobroma cacao HOM05D002702 ORTHO05D003416 1.6e-09 66.6 114 49.1
DCAR_031564 Daucus carota HOM05D002702 ORTHO05D003416 2.1e-09 66.2 121 43.0
Sed0020965 Sechium edule HOM05D002702 ORTHO05D010786 2.1e-09 66.2 130 42.3
Aqoxy4G00023 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 3.6e-09 65.5 130 41.5
Thhalv10011362m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 3.6e-09 65.5 84 46.4
RcHm_v2.0_Chr7g0228131 Rosa chinensis HOM05D002702 ORTHO05D003416 3.6e-09 65.5 130 39.2
vmacro20470 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 4.7e-09 65.1 132 46.2
vmacro10812 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 6.1e-09 64.7 125 47.2
Aqoxy5G01199 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 8.0e-09 64.3 132 43.2
Lj2g0010098 Lotus japonicus HOM05D002702 ORTHO05D003416 8.0e-09 64.3 129 39.5
ECA233G5179 Erigeron canadensis HOM05D002702 ORTHO05D003416 1.0e-08 63.9 81 49.4
Eucgr.A02144 Eucalyptus grandis HOM05D002702 ORTHO05D003416 1.4e-08 63.5 108 41.7
PGR042G0279 Punica granatum HOM05D002702 ORTHO05D003416 1.4e-08 63.5 61 62.3
FAN13G2753 Fragaria x ananassa HOM05D002702 ORTHO05D003416 2.3e-08 62.8 130 39.2
CARHR083720 Cardamine hirsuta HOM05D002702 ORTHO05D003416 4.0e-08 62.0 62 54.8
QL05p040799 Quercus lobata HOM05D002702 ORTHO05D003416 4.0e-08 62.0 131 38.9
CiPaw.15G041500 Carya illinoinensis HOM05D002702 ORTHO05D003416 6.8e-08 61.2 119 41.2
Manes.08G152300 Manihot esculenta HOM05D002702 ORTHO05D003416 6.8e-08 61.2 108 46.3
DCAR_028213 Daucus carota HOM05D002702 ORTHO05D003416 8.9e-08 60.8 117 42.7
ECA233G5306 Erigeron canadensis HOM05D002702 ORTHO05D003416 1.5e-07 60.1 106 44.3
PSO170G0409 Papaver somniferum HOM05D002702 ORTHO05D003416 1.5e-07 60.1 101 44.6
CiPaw.08G118400 Carya illinoinensis HOM05D002702 ORTHO05D003416 2.0e-07 59.7 118 43.2
Thhalv10027195m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 2.6e-07 59.3 85 41.2
ATR0697G089 Amborella trichopoda HOM05D002702 ORTHO05D003416 3.4e-07 58.9 90 41.1
Cc02_g13440 Coffea canephora HOM05D002702 ORTHO05D003416 3.4e-07 58.9 82 47.6
ClCG11G015790 Citrullus lanatus HOM05D002702 ORTHO05D010786 4.4e-07 58.5 128 42.2
CsaV3_1G039340 Cucumis sativus L. HOM05D002702 ORTHO05D003416 4.4e-07 58.5 123 39.8
Rhsim05G0035300 Rhododendron simsii HOM05D002702 ORTHO05D003416 4.4e-07 58.5 131 42.0
Actinidia39727 Actinidia chinensis HOM05D002702 ORTHO05D019466 5.8e-07 58.2 133 41.4
Lalb_Chr02g0157421 Lupinus albus HOM05D002702 ORTHO05D003416 5.8e-07 58.2 122 41.8
Glyma.16G035400 Glycine max HOM05D002702 ORTHO05D003416 7.5e-07 57.8 133 36.1
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 7.5e-07 57.8 46 67.4
SGA_v2.0_scaffold17G07984 Striga asiatica HOM05D002702 ORTHO05D003416 7.5e-07 57.8 77 46.8
Aa31LG3G1860 Aethionema arabicum HOM05D002702 ORTHO05D003416 9.8e-07 57.4 134 39.6
Migut.K00214 Erythranthe guttata HOM05D002702 ORTHO05D003416 9.8e-07 57.4 110 40.9
unitig_748.g8246 Utricularia gibba HOM05D002702 ORTHO05D003416 9.8e-07 57.4 67 52.2
DCAR_013573 Daucus carota HOM05D002702 ORTHO05D003416 1.7e-06 56.6 114 42.1
COL.COLO4_20084 Corchorus olitorius HOM05D002702 ORTHO05D003416 2.2e-06 56.2 66 54.5
Glyma.19G117700 Glycine max HOM05D002702 ORTHO05D003416 2.2e-06 56.2 133 37.6
AL3G20510 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 4.9e-06 55.1 58 50.0
EL10Ac3g05092 Beta vulgaris HOM05D002702 ORTHO05D003416 6.4e-06 54.7 65 50.8
TPR.G9547 Trifolium pratense HOM05D002702 ORTHO05D003416 6.4e-06 54.7 118 40.7


User provided reference genes

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