Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.1312 Acer truncatum HOM05D003132 ORTHO05D026271 2.2e-67 258.8 132 100.0
Atru.chr13.1356 Acer truncatum HOM05D003132 ORTHO05D026271 1.1e-50 203.4 108 97.2
MD00G1104300 Malus domestica HOM05D003132 ORTHO05D003736 1.7e-30 136.3 133 59.4
Cfa015956 Carpinus fangiana HOM05D003132 ORTHO05D003736 8.2e-30 134.0 133 57.9
CiPaw.06G024400 Carya illinoinensis HOM05D003132 ORTHO05D003736 1.2e-28 130.2 131 55.7
TAR628G0266 Trochodendron aralioides HOM05D003132 ORTHO05D003736 2.0e-28 129.4 133 55.6
MD15G1358700 Malus domestica HOM05D003132 ORTHO05D003736 7.7e-28 127.5 134 56.7
Ciclev10001011m.g Citrus clementina HOM05D003132 ORTHO05D003736 1.0e-27 127.1 134 58.2
FAN04G1930 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.0e-27 127.1 132 53.8
Dinv26724 Davidia involucrata HOM05D003132 ORTHO05D003736 2.2e-27 125.9 135 54.1
FvH4_5g38820 Fragaria vesca HOM05D003132 ORTHO05D003736 2.9e-27 125.6 133 54.1
FAN18G1429 Fragaria x ananassa HOM05D003132 ORTHO05D003736 2.9e-27 125.6 133 54.1
Prupe.1G506400 Prunus persica HOM05D003132 ORTHO05D003736 2.9e-27 125.6 151 49.7
Haze_00527 Corylus avellana HOM05D003132 ORTHO05D003736 3.8e-27 125.2 140 55.0
FAN08G0026 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.4e-26 123.2 133 52.6
RcHm_v2.0_Chr7g0240821 Rosa chinensis HOM05D003132 ORTHO05D003736 4.2e-26 121.7 133 52.6
Manes.02G158500 Manihot esculenta HOM05D003132 ORTHO05D003736 9.4e-26 120.6 112 63.4
TWI56G0630 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 9.4e-26 120.6 122 57.4
FAN13G2880 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.2e-25 120.2 133 53.4
Lalb_Chr11g0065661 Lupinus albus HOM05D003132 ORTHO05D003736 2.1e-25 119.4 134 53.7
CiPaw.05G229400 Carya illinoinensis HOM05D003132 ORTHO05D003736 2.7e-25 119.0 133 54.1
Haze_00528 Corylus avellana HOM05D003132 ORTHO05D003736 1.4e-24 116.7 119 55.5
Potri.005G171500 Populus trichocarpa HOM05D003132 ORTHO05D003736 2.3e-24 115.9 111 59.5
Sabra05G0129000 Salix brachista HOM05D003132 ORTHO05D003736 3.9e-24 115.2 123 50.4
Cpa.g.sc828.2 Carica papaya HOM05D003132 ORTHO05D003736 2.0e-23 112.8 133 51.9
Manes.18G072550 Manihot esculenta HOM05D003132 ORTHO05D003736 4.4e-23 111.7 115 54.8
Thecc.08G116200 Theobroma cacao HOM05D003132 ORTHO05D003736 5.7e-23 111.3 133 50.4
Duzib041G0476 Durio zibethinus HOM05D003132 ORTHO05D003736 1.7e-22 109.8 132 48.5
QL12p035360 Quercus lobata HOM05D003132 ORTHO05D003736 2.2e-22 109.4 163 45.4
COL.COLO4_21818 Corchorus olitorius HOM05D003132 ORTHO05D003736 2.8e-22 109.0 132 49.2
arahy.Tifrunner.gnm1.ann1.M9VU1N Arachis hypogaea HOM05D003132 ORTHO05D003736 4.8e-22 108.2 138 50.7
Lj1g0008302 Lotus japonicus HOM05D003132 ORTHO05D003736 1.1e-21 107.1 125 52.0
Psat5g133920 Pisum sativum HOM05D003132 ORTHO05D003736 1.8e-21 106.3 74 66.2
arahy.Tifrunner.gnm1.ann1.KS02B5 Arachis hypogaea HOM05D003132 ORTHO05D003736 3.1e-21 105.5 138 50.0
CSS0019182 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 3.1e-21 105.5 121 49.6
PGR044G0368 Punica granatum HOM05D003132 ORTHO05D003736 5.3e-21 104.8 139 43.9
Gohir.D06G041500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 9.1e-21 104.0 135 47.4
Glyma.04G254000 Glycine max HOM05D003132 ORTHO05D003736 1.2e-20 103.6 123 51.2
Ca_25763_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 2.6e-20 102.4 74 66.2
Thhalv10020497m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 2.6e-20 102.4 133 45.9
Glyma.06G108200 Glycine max HOM05D003132 ORTHO05D003736 4.5e-20 101.7 124 48.4
Actinidia29433 Actinidia chinensis HOM05D003132 ORTHO05D003736 5.9e-20 101.3 132 49.2
Gohir.A06G040500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 5.9e-20 101.3 135 45.9
BraA05t21832Z Brassica rapa HOM05D003132 ORTHO05D003736 1.0e-19 100.5 122 46.7
Gorai.010G046700 Gossypium raimondii HOM05D003132 ORTHO05D003736 1.0e-19 100.5 135 46.7
Rhsim11G0064900 Rhododendron simsii HOM05D003132 ORTHO05D003736 1.0e-19 100.5 121 47.9
TPR.G32950 Trifolium pratense HOM05D003132 ORTHO05D003736 1.0e-19 100.5 109 52.3
THA.LOC104806806 Tarenaya hassleriana HOM05D003132 ORTHO05D003736 2.2e-19 99.4 138 48.6
VMungo1309G0264 Vigna mungo HOM05D003132 ORTHO05D003736 2.2e-19 99.4 125 48.8
Sc01g0001580 Simmondsia chinensis HOM05D003132 ORTHO05D003736 3.8e-19 98.6 128 45.3
SalBow7G2329 Salvia bowleyana HOM05D003132 ORTHO05D003736 8.5e-19 97.4 123 43.9
SalBow7G4391 Salvia bowleyana HOM05D003132 ORTHO05D003736 8.5e-19 97.4 123 43.9
BcaC05g28420 Brassica carinata HOM05D003132 ORTHO05D003736 1.1e-18 97.1 98 55.1
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 1.4e-18 96.7 111 48.6
C05p45020 Brassica napus HOM05D003132 ORTHO05D003736 1.4e-18 96.7 98 55.1
PSO017G5000 Papaver somniferum HOM05D003132 ORTHO05D003736 1.9e-18 96.3 125 48.8
Sed0019762 Sechium edule HOM05D003132 ORTHO05D003736 2.5e-18 95.9 115 51.3
BolC5t33226H Brassica oleracea HOM05D003132 ORTHO05D003736 3.2e-18 95.5 98 54.1
TAR624G0618 Trochodendron aralioides HOM05D003132 ORTHO05D003736 5.5e-18 94.7 135 45.2
AL3G33220 Arabidopsis lyrata HOM05D003132 ORTHO05D003736 9.4e-18 94.0 112 49.1
Migut.C01198 Erythranthe guttata HOM05D003132 ORTHO05D003736 1.2e-17 93.6 134 43.3
Medtr3g073360 Medicago truncatula HOM05D003132 ORTHO05D003736 1.2e-17 93.6 75 61.3
PSO170G1030 Papaver somniferum HOM05D003132 ORTHO05D003736 1.2e-17 93.6 128 46.9
Aqoxy5G02472 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 1.6e-17 93.2 132 44.7
Dinv27388 Davidia involucrata HOM05D003132 ORTHO05D003736 1.6e-17 93.2 64 68.8
A05p29830 Brassica napus HOM05D003132 ORTHO05D003736 2.1e-17 92.8 111 47.7
Oeu001990.2 Olea europaea HOM05D003132 ORTHO05D003736 2.7e-17 92.4 138 42.0
Sp3g17790 Schrenkiella parvula HOM05D003132 ORTHO05D003736 2.7e-17 92.4 123 43.9
BcaB06g26045 Brassica carinata HOM05D003132 ORTHO05D003736 3.6e-17 92.0 99 51.5
Nn1g08540 Nelumbo nucifera HOM05D003132 ORTHO05D003736 4.7e-17 91.7 98 57.1
Nitab4.5_0002247g0160 Nicotiana tabacum HOM05D003132 ORTHO05D003736 6.1e-17 91.3 124 44.4
Nitab4.5_0004014g0020 Nicotiana tabacum HOM05D003132 ORTHO05D003736 6.1e-17 91.3 123 43.9
Hund20801 Selenicereus undatus HOM05D003132 ORTHO05D003736 6.1e-17 91.3 95 52.6
Ah.05g172730 Amaranthus hybridus HOM05D003132 ORTHO05D003736 8.0e-17 90.9 90 56.7
C05p44900 Brassica napus HOM05D003132 ORTHO05D033514 1.0e-16 90.5 77 62.3
Oeu039582.2 Olea europaea HOM05D003132 ORTHO05D003736 1.0e-16 90.5 117 42.7
Lj7C306G6 Lonicera japonica HOM05D000316 ORTHO05D000374 1.4e-16 90.1 127 44.1
Phvul.009G026000 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 1.8e-16 89.7 126 46.0
MBI03_g11133_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 2.3e-16 89.4 128 40.6
CARHR095280 Cardamine hirsuta HOM05D003132 ORTHO05D003736 3.9e-16 88.6 99 48.5
CAN.G134.60 Capsicum annuum HOM05D003132 ORTHO05D003736 8.8e-16 87.4 125 42.4
BcaB08g37217 Brassica carinata HOM05D003132 ORTHO05D003736 1.1e-15 87.0 97 47.4
A10p27920 Brassica napus HOM05D003132 ORTHO05D003736 1.1e-15 87.0 99 49.5
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 1.1e-15 87.0 99 49.5
SGA_v2.0_scaffold28G12034 Striga asiatica HOM05D003132 ORTHO05D003736 1.1e-15 87.0 122 40.2
DCAR_020428 Daucus carota HOM05D003132 ORTHO05D003736 2.0e-15 86.3 123 43.1
BolC9t59562H Brassica oleracea HOM05D003132 ORTHO05D003736 2.6e-15 85.9 97 46.4
AT3G19770 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 3.3e-15 85.5 112 46.4
Peaxi162Scf00647g00129 Petunia axillaris HOM05D003132 ORTHO05D003736 3.3e-15 85.5 133 42.1
Solyc01g096990.4 Solanum lycopersicum HOM05D003132 ORTHO05D003736 4.4e-15 85.1 93 48.4
Sopen01g040690 Solanum pennellii HOM05D003132 ORTHO05D003736 4.4e-15 85.1 93 48.4
AT5G09320 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 5.7e-15 84.7 99 49.5
BcaB08g37215 Brassica carinata HOM05D003132 ORTHO05D003736 7.4e-15 84.3 127 41.7
AUR62004688 Chenopodium quinoa HOM05D003132 ORTHO05D003736 7.4e-15 84.3 131 45.8
ECA238G0880 Erigeron canadensis HOM05D003132 ORTHO05D003736 9.7e-15 84.0 119 43.7
SGA_v2.0_scaffold297G47601 Striga asiatica HOM05D003132 ORTHO05D003736 1.3e-14 83.6 60 61.7
PGSC0003DMG400027521 Solanum tuberosum HOM05D003132 ORTHO05D003736 1.7e-14 83.2 93 49.5
EL10Ac1g00043 Beta vulgaris HOM05D003132 ORTHO05D003736 2.8e-14 82.4 119 44.5
CsaV3_2G011340 Cucumis sativus L. HOM05D003132 ORTHO05D003736 4.8e-14 81.6 126 46.0
ClCG06G009880 Citrullus lanatus HOM05D003132 ORTHO05D003736 8.2e-14 80.9 124 46.0
MELO3C008519.2 Cucumis melo HOM05D003132 ORTHO05D003736 8.2e-14 80.9 116 45.7
Sp6g33990 Schrenkiella parvula HOM05D003132 ORTHO05D003736 1.4e-13 80.1 99 47.5
vmacro00793 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 1.4e-13 80.1 49 67.3
Carub.0003s1964 Capsella rubella HOM05D003132 ORTHO05D003736 1.8e-13 79.7 111 42.3
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 1.8e-13 79.7 62 64.5
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 1.6e-12 76.6 100 45.0
ECA246G0273 Erigeron canadensis HOM05D003132 ORTHO05D003736 2.0e-12 76.3 52 63.5
CDE06G1857 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 4.5e-12 75.1 124 40.3
Zm00001eb398120 Zea mays HOM05D003132 ORTHO05D003736 5.9e-12 74.7 64 54.7
CARHR204070 Cardamine hirsuta HOM05D003132 ORTHO05D003736 7.7e-12 74.3 55 61.8
HanXRQChr15g0496671 Helianthus annuus HOM05D003132 ORTHO05D003736 1.0e-11 73.9 131 36.6
SGA_v2.0_scaffold118G32441 Striga asiatica HOM05D003132 ORTHO05D003736 1.7e-11 73.2 42 71.4
HPP92_002181 Vanilla planifolia HOM05D003132 ORTHO05D003736 1.7e-11 73.2 112 42.9
HanXRQChr14g0440811 Helianthus annuus HOM05D003132 ORTHO05D003736 1.1e-10 70.5 94 41.5
unitig_21.g20190 Utricularia gibba HOM05D003132 ORTHO05D003736 1.5e-10 70.1 49 59.2
CDE06G0428 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 1.9e-10 69.7 107 41.1
Lsat_1_v5_gn_2_115101 Lactuca sativa HOM05D003132 ORTHO05D003736 1.2e-09 67.0 52 53.8
Lsat_1_v5_gn_9_67980 Lactuca sativa HOM05D003132 ORTHO05D003736 1.2e-09 67.0 109 35.8
AUR62023605 Chenopodium quinoa HOM05D003132 ORTHO05D003736 1.0e-08 63.9 43 69.8
SMO356G0397 Selaginella moellendorffii HOM05D003132 ORTHO05D003736 3.0e-08 62.4 52 50.0
Gohir.D05G234032 Gossypium hirsutum HOM05D003132 ORTHO05D026271 8.8e-08 60.8 41 68.3
Gorai.009G242200 Gossypium raimondii HOM05D003132 ORTHO05D026271 8.8e-08 60.8 41 68.3
ATR0171G023 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.2e-07 60.5 80 40.0
Mapoly0003s0258 Marchantia polymorpha HOM05D003132 ORTHO05D003736 2.6e-07 59.3 54 42.6
SEGI_30049 Sequoiadendron giganteum HOM05D003132 ORTHO05D003736 9.7e-07 57.4 53 47.2
ATR0495G010 Amborella trichopoda HOM05D003132 ORTHO05D003736 3.7e-06 55.5 80 37.5
Pp3c23_18370 Physcomitrium patens HOM05D003132 ORTHO05D003736 3.7e-06 55.5 111 31.5


User provided reference genes

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