Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1610.5 809 100.0
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1306.2 809 81.3
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1216.4 813 75.4
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1212.6 809 75.9
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1208.7 813 75.2
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1208.7 809 75.8
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1206.8 813 75.2
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1198.3 809 75.0
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 0.0e+00 1197.2 812 74.9
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1188.3 812 74.3
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1175.2 810 74.2
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1174.1 809 72.8
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 0.0e+00 1164.1 813 71.7
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1161.0 810 72.7
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1151.3 825 70.7
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1143.6 812 71.7
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1142.5 814 70.6
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 0.0e+00 1138.6 832 69.8
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1137.5 810 71.2
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1136.7 809 71.1
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 0.0e+00 1129.0 809 70.6
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1120.1 809 70.3
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1119.0 809 70.2
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 0.0e+00 1109.7 809 70.1
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 0.0e+00 1104.0 812 68.0
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1102.8 809 69.6
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 0.0e+00 1077.8 871 65.0
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 0.0e+00 1075.5 813 67.8
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 5.5e-312 1073.5 812 65.3
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 2.8e-311 1071.6 817 66.5
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 2.1e-309 1065.4 815 64.5
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 2.7e-309 1065.1 822 64.4
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 6.0e-309 1063.9 791 67.6
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 1.3e-306 1056.2 823 64.2
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.3e-306 1056.2 815 66.9
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 8.2e-306 1053.5 785 67.8
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 8.2e-306 1053.5 807 65.8
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.5e-304 1049.3 821 65.0
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 7.6e-304 1047.0 808 66.1
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 5.0e-303 1044.3 807 66.0
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 6.5e-303 1043.9 818 66.5
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 4.2e-302 1041.2 822 64.2
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 7.2e-302 1040.4 807 65.1
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 3.0e-300 1035.0 805 65.2
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 1.1e-299 1033.1 793 66.2
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.5e-299 1032.7 731 71.7
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 2.5e-299 1031.9 832 63.7
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 3.3e-299 1031.6 814 65.6
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 3.3e-299 1031.6 832 63.1
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 7.4e-299 1030.4 812 64.8
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 1.6e-298 1029.2 818 65.0
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 2.2e-298 1028.9 800 65.0
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 2.8e-298 1028.5 790 67.0
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 1.1e-297 1026.5 800 64.6
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 4.1e-297 1024.6 807 64.3
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 8.5e-295 1016.9 789 64.8
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 2.5e-294 1015.4 819 62.6
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 3.2e-294 1015.0 815 64.3
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 2.3e-292 1008.8 786 64.6
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 1.5e-291 1006.1 821 63.6
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 2.2e-290 1002.3 829 62.1
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 1.4e-289 999.6 813 63.3
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 1.5e-288 996.1 811 63.0
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 2.0e-288 995.7 819 62.9
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 3.4e-288 995.0 806 63.9
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.3e-287 993.0 815 62.6
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 2.2e-287 992.3 815 61.6
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 6.5e-287 990.7 811 62.6
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 1.9e-286 989.2 736 68.6
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.9e-286 989.2 812 61.8
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.2e-286 988.4 758 66.1
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 2.7e-285 985.3 816 63.0
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 2.3e-284 982.2 813 61.6
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 5.2e-284 981.1 786 65.5
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 5.7e-283 977.6 815 61.7
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 7.4e-283 977.2 817 62.5
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 7.0e-281 970.7 823 61.4
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 2.6e-280 968.8 841 60.2
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 1.3e-279 966.5 814 61.5
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 5.2e-268 927.9 822 61.2
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 4.4e-267 924.9 614 75.4
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 6.3e-266 921.0 810 59.1
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 2.7e-264 915.6 812 59.4
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 4.5e-256 888.3 710 63.4
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.5e-256 888.3 859 57.6
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.3e-255 885.9 619 73.0
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.3e-255 885.9 619 73.0
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 3.8e-255 885.2 880 54.3
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 2.1e-253 879.4 828 56.3
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.3e-247 860.1 620 71.3
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.3e-239 832.8 592 70.4
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 4.0e-236 822.0 762 57.2
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 7.1e-233 811.2 616 67.4
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 1.1e-222 777.3 623 64.4
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 1.6e-213 746.9 719 53.8
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 2.0e-195 686.8 800 49.0
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 3.2e-193 679.5 789 46.4
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.2e-192 677.6 810 45.7
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 9.4e-185 651.4 547 62.5
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 3.0e-183 646.4 725 47.9
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 4.1e-164 582.8 482 63.7
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 1.6e-163 580.9 403 71.7
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 1.2e-160 571.2 472 60.2
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 4.5e-155 552.7 550 52.0
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 2.6e-150 537.0 395 70.4
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.3e-141 508.1 331 73.1
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 2.4e-132 477.2 813 36.3
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.7e-131 473.8 394 63.2
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.3e-130 471.5 343 67.3
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 8.6e-130 468.8 340 67.4
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 8.1e-120 435.6 787 36.6
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 4.6e-115 419.9 776 35.6
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 6.4e-101 372.9 480 46.5
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 3.2e-100 370.5 279 66.3
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.9e-98 363.6 458 43.2
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.0e-85 322.4 249 63.5
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.3e-82 311.2 301 55.8
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.9e-75 286.2 183 73.2
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 2.3e-74 284.6 872 28.7
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.6e-72 278.5 380 46.3
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 5.5e-68 263.5 324 46.3
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.1e-65 255.8 306 45.4
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.2e-62 245.7 189 62.4
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 1.1e-55 222.6 187 59.9
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.1e-55 221.1 144 71.5
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 9.1e-55 219.5 231 48.1
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 3.5e-54 217.6 216 59.7
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.0e-45 189.5 162 61.7
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.5e-44 183.7 168 58.9
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.2e-44 183.3 166 60.8
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.0e-42 179.5 168 58.9
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 4.1e-39 167.5 214 46.3
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 5.0e-37 160.6 215 43.3
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 4.0e-26 124.4 147 52.4
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 3.3e-20 104.8 106 51.9
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 1.8e-18 99.0 717 21.9
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 1.2e-11 76.3 403 23.1
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 5.2e-10 70.9 73 50.7
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.8e-09 67.4 43 69.8
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.9e-07 62.4 67 49.3


User provided reference genes

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