Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 2.4e-226 788.5 390 100.0
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 3.1e-101 372.9 418 52.4
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 7.6e-92 341.7 419 48.4
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 5.5e-90 335.5 358 54.7
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 1.3e-88 330.9 412 46.8
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.9e-87 327.0 434 46.3
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 2.2e-86 323.6 372 51.9
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 9.0e-85 318.2 409 48.4
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 2.9e-75 286.6 403 43.2
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 8.8e-72 275.0 400 44.0
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 1.0e-64 251.5 446 40.1
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 1.1e-61 241.5 305 45.9
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 6.5e-59 232.3 394 40.4
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.5e-58 230.3 304 47.0
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 1.4e-56 224.6 326 42.0
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 1.8e-56 224.2 436 39.2
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.3e-56 223.8 358 38.8
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 1.2e-55 221.5 332 40.1
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.0e-55 220.7 271 47.2
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 2.6e-55 220.3 335 40.6
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 3.4e-55 219.9 334 41.6
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 3.4e-55 219.9 316 41.8
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 3.4e-55 219.9 310 44.2
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.7e-54 217.6 341 41.3
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 2.2e-54 217.2 330 41.5
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 2.2e-54 217.2 340 42.1
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 2.8e-54 216.9 321 40.8
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 8.3e-54 215.3 325 40.6
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 1.1e-53 214.9 356 39.0
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.4e-53 214.5 436 38.8
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 1.4e-53 214.5 313 43.5
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 1.4e-53 214.5 305 42.0
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 7.0e-53 212.2 426 34.0
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 7.0e-53 212.2 428 37.4
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 7.0e-53 212.2 309 42.1
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 7.0e-53 212.2 341 40.8
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 9.1e-53 211.8 426 36.4
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 1.2e-52 211.5 362 40.1
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 1.6e-52 211.1 341 39.9
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.0e-52 210.7 460 37.2
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 2.7e-52 210.3 341 40.5
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 7.7e-52 208.8 327 38.8
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.0e-51 208.4 334 39.8
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 1.0e-51 208.4 326 40.8
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 1.0e-51 208.4 313 39.0
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 2.2e-51 207.2 273 45.8
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 3.8e-51 206.5 338 41.4
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 6.5e-51 205.7 311 41.5
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 6.5e-51 205.7 247 46.2
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 6.5e-51 205.7 323 36.5
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 8.5e-51 205.3 322 39.8
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 8.5e-51 205.3 360 40.0
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 8.5e-51 205.3 337 38.9
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.5e-50 204.5 255 46.3
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.5e-50 204.5 335 40.9
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 1.9e-50 204.1 336 37.5
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.9e-50 204.1 266 43.6
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 1.9e-50 204.1 328 40.9
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 2.5e-50 203.8 329 39.2
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 3.2e-50 203.4 325 41.2
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 4.2e-50 203.0 307 41.7
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 5.5e-50 202.6 228 48.2
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 1.2e-49 201.4 314 40.4
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 2.1e-49 200.7 188 56.9
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 3.6e-49 199.9 365 39.5
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.6e-49 199.9 251 42.6
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 4.7e-49 199.5 329 38.9
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 4.7e-49 199.5 427 35.6
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 4.7e-49 199.5 359 35.7
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 4.7e-49 199.5 485 34.8
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 6.1e-49 199.1 248 45.2
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 8.0e-49 198.7 245 45.7
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 8.0e-49 198.7 299 43.5
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 8.0e-49 198.7 314 40.8
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 1.0e-48 198.4 326 41.1
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 1.0e-48 198.4 319 41.1
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 1.8e-48 197.6 246 44.7
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.3e-48 197.2 248 45.6
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 6.8e-48 195.7 282 41.1
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 1.2e-47 194.9 322 39.1
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.2e-47 194.9 284 40.8
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 1.2e-47 194.9 307 40.1
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 1.5e-47 194.5 341 37.5
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.6e-47 193.7 331 37.8
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 3.4e-47 193.4 439 34.9
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.4e-47 193.0 329 40.1
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 5.7e-47 192.6 336 35.1
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 7.5e-47 192.2 326 37.7
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 2.2e-46 190.7 238 45.0
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 3.7e-46 189.9 241 46.1
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 4.9e-46 189.5 333 38.7
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 6.3e-46 189.1 353 36.0
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 6.3e-46 189.1 328 38.4
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 8.3e-46 188.7 333 38.7
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 8.3e-46 188.7 359 35.7
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 1.1e-45 188.3 316 38.9
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.8e-45 187.6 334 37.4
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 2.4e-45 187.2 317 37.9
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 2.4e-45 187.2 324 37.7
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 4.1e-45 186.4 345 36.2
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 5.4e-45 186.0 313 38.7
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 5.4e-45 186.0 165 53.3
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 5.4e-45 186.0 185 48.6
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 9.2e-45 185.3 322 35.7
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 9.2e-45 185.3 310 39.0
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 9.2e-45 185.3 310 39.0
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 9.2e-45 185.3 418 34.4
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 1.2e-44 184.9 331 37.2
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.7e-44 183.7 428 34.6
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 2.7e-44 183.7 239 41.8
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 3.5e-44 183.3 352 36.4
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 4.5e-44 183.0 368 34.2
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.0e-43 181.8 317 37.9
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 2.9e-43 180.3 350 36.6
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 3.8e-43 179.9 319 37.6
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 3.8e-43 179.9 318 37.1
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 3.8e-43 179.9 265 39.2
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 3.8e-43 179.9 251 41.8
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 5.0e-43 179.5 302 39.4
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 1.1e-42 178.3 313 37.1
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 1.1e-42 178.3 270 39.3
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 1.5e-42 177.9 312 36.5
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.9e-42 177.6 317 36.3
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 2.5e-42 177.2 269 39.0
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 2.8e-41 173.7 334 36.2
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.4e-40 171.4 316 36.7
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.3e-40 170.6 246 40.7
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 2.3e-40 170.6 246 40.7
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.8e-40 169.1 340 35.3
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.2e-39 168.3 198 47.5
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 4.4e-39 166.4 245 39.2
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.2e-36 158.3 246 42.3
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.6e-36 157.9 206 42.2
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 2.3e-35 154.1 422 29.9
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 6.6e-35 152.5 263 39.2
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 8.6e-35 152.1 247 38.5
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 1.1e-34 151.8 190 44.7
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 9.5e-34 148.7 325 33.5
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.6e-33 146.7 218 42.2
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 2.9e-30 137.1 214 41.1
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 4.6e-28 129.8 237 38.8
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 6.0e-28 129.4 384 31.5
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 5.0e-27 126.3 216 37.0
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 1.1e-26 125.2 150 43.3
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.1e-25 120.9 311 30.9
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 4.7e-25 119.8 255 31.8
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 6.8e-24 115.9 286 29.4
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 3.4e-23 113.6 287 27.9
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 9.8e-23 112.1 114 53.5
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 1.1e-21 108.6 170 34.1
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 2.3e-19 100.9 88 58.0
MD16G1035300 Malus domestica HOM05D001849 ORTHO05D004075 5.1e-19 99.8 306 27.8
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 8.1e-17 92.4 141 41.8
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.4e-16 91.7 134 41.0
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 1.8e-16 91.3 94 47.9
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 3.1e-16 90.5 101 46.5
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 4.4e-15 86.7 136 36.8
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 1.4e-13 81.6 120 41.7
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 1.2e-12 78.6 147 40.1
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.6e-12 78.2 99 45.5
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 5.6e-10 69.7 66 53.0
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 7.3e-10 69.3 90 38.9
Lj6P751T18 Lonicera japonica HOM05D001849 ORTHO05D004075 6.2e-09 66.2 178 33.1


User provided reference genes

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