Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 1.2e-226 789.6 439 100.0
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 1.0e-124 451.1 435 62.1
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 6.2e-90 335.5 467 50.7
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 7.5e-88 328.6 466 51.5
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 7.1e-86 322.0 474 47.3
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 2.3e-84 317.0 434 50.7
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 3.3e-83 313.2 444 46.8
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 4.3e-83 312.8 417 50.4
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 1.2e-82 311.2 326 56.1
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 1.1e-81 308.1 325 55.4
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 4.4e-80 302.8 335 54.0
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 6.4e-79 298.9 435 48.3
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 3.2e-78 296.6 367 47.7
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 7.8e-77 292.0 437 46.9
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 1.3e-76 291.2 368 53.8
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 2.3e-76 290.4 521 41.3
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 3.0e-76 290.0 351 50.7
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 3.3e-75 286.6 442 44.8
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 7.3e-75 285.4 515 42.3
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 2.4e-73 280.4 447 45.4
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 1.2e-72 278.1 330 53.3
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 2.4e-70 270.4 325 50.5
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 3.2e-70 270.0 293 53.9
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 1.6e-69 267.7 522 39.7
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 1.0e-68 265.0 336 48.8
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 3.9e-68 263.1 418 43.3
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 5.1e-68 262.7 446 47.3
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 5.1e-68 262.7 336 47.9
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 1.5e-67 261.2 425 47.3
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.5e-67 261.2 452 43.1
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 9.6e-67 258.5 372 46.2
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 1.3e-66 258.1 325 48.3
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.6e-66 257.7 411 45.0
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 1.1e-65 255.0 433 43.6
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 1.1e-65 255.0 385 44.4
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 3.1e-65 253.4 387 44.7
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 6.9e-65 252.3 319 47.0
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 9.0e-65 251.9 393 42.7
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 2.6e-64 250.4 413 44.6
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 2.6e-64 250.4 402 40.8
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 3.4e-64 250.0 495 37.0
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 1.7e-63 247.7 346 44.8
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 2.9e-63 246.9 390 42.1
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 6.4e-63 245.7 402 44.3
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 1.9e-62 244.2 423 40.2
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 2.4e-62 243.8 398 43.7
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 5.4e-62 242.7 320 45.6
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 7.1e-62 242.3 310 45.8
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 9.3e-62 241.9 322 47.2
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 1.6e-61 241.1 317 47.3
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 3.5e-61 240.0 426 40.8
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 6.0e-61 239.2 390 43.3
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 1.0e-60 238.4 316 47.2
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 1.7e-60 237.7 371 45.8
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 3.0e-60 236.9 310 48.7
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 3.0e-60 236.9 310 48.7
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 5.1e-60 236.1 442 40.5
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 1.1e-59 235.0 320 46.6
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 3.3e-59 233.4 417 39.6
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 4.3e-59 233.0 427 39.3
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 5.6e-59 232.6 563 35.2
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 7.3e-59 232.3 320 45.9
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 2.8e-58 230.3 384 46.4
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 3.6e-58 229.9 526 35.9
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 8.1e-58 228.8 319 45.5
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 1.8e-57 227.6 457 39.6
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 3.1e-57 226.9 318 45.3
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 1.2e-56 224.9 390 45.4
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.5e-56 224.6 578 35.1
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 2.6e-56 223.8 536 36.4
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 4.5e-56 223.0 437 36.6
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 7.6e-56 222.2 395 43.8
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 2.9e-55 220.3 544 35.3
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 2.4e-54 217.2 431 36.7
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 2.4e-54 217.2 525 37.5
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 4.2e-54 216.5 578 34.8
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 5.4e-54 216.1 412 37.9
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 5.4e-54 216.1 330 44.2
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.6e-53 214.5 303 44.2
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 2.1e-53 214.2 524 38.7
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 2.3e-52 210.7 414 38.4
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 3.9e-52 209.9 218 53.7
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 5.1e-52 209.5 305 44.9
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 1.9e-51 207.6 435 36.6
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 2.5e-51 207.2 334 42.8
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 5.6e-51 206.1 332 42.8
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 1.4e-49 201.4 327 41.0
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 2.4e-49 200.7 317 41.6
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 3.1e-49 200.3 555 34.4
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 3.1e-49 200.3 494 36.0
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 1.0e-47 195.3 420 36.9
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 1.7e-47 194.5 419 36.5
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 2.9e-47 193.7 247 48.2
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 3.2e-46 190.3 418 36.4
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 3.7e-42 176.8 159 54.1
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 8.2e-42 175.6 275 42.9
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 3.8e-39 166.8 336 38.1
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 9.3e-38 162.2 274 40.1
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 9.3e-38 162.2 309 35.6
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 5.1e-36 156.4 287 41.5
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 4.1e-33 146.7 153 49.0
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 1.0e-31 142.1 233 42.5
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 2.7e-29 134.0 160 41.2
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 2.3e-28 131.0 159 44.7
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 3.0e-28 130.6 161 40.4
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 7.4e-27 125.9 286 33.2
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 9.7e-27 125.6 238 36.6
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 1.0e-23 115.5 287 31.4
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 1.2e-21 108.6 235 29.8
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 4.7e-21 106.7 68 73.5
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 7.0e-17 92.8 64 64.1
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.3e-12 77.8 115 42.6
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 3.0e-12 77.4 180 36.1
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 4.0e-12 77.0 65 55.4
GSVIVG01020169001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.5e-06 58.5 87 44.8


User provided reference genes

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