Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 0.0e+00 1385.5 718 100.0
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 3.6e-289 998.0 763 69.9
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 1.6e-249 866.3 730 63.0
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 1.4e-248 863.2 730 62.7
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 6.9e-248 860.9 767 60.8
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 1.2e-239 833.6 771 59.8
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 9.3e-237 823.9 798 57.5
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 5.7e-234 814.7 769 59.0
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 1.3e-233 813.5 747 60.4
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 2.2e-233 812.8 765 59.0
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 1.3e-230 803.5 705 61.7
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 1.4e-229 800.0 744 60.2
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 4.2e-229 798.5 705 61.4
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 2.0e-226 789.6 703 59.9
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 1.7e-225 786.6 765 57.6
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 8.2e-225 784.3 727 59.0
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 4.5e-223 778.5 738 59.6
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 3.2e-221 772.3 902 50.4
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 1.6e-220 770.0 700 58.1
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 3.0e-219 765.8 735 57.6
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 3.9e-219 765.4 738 57.7
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 3.9e-219 765.4 735 57.6
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 3.9e-219 765.4 728 57.4
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 6.7e-219 764.6 687 59.2
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 6.7e-219 764.6 702 58.1
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 7.4e-218 761.1 720 60.1
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 2.8e-217 759.2 744 56.5
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 7.0e-216 754.6 730 54.2
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 5.9e-215 751.5 771 55.4
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 1.7e-214 750.0 717 57.7
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 6.5e-214 748.0 765 55.2
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 8.5e-214 747.7 789 53.6
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 6.1e-212 741.5 794 53.8
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 3.0e-211 739.2 763 55.3
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 5.2e-211 738.4 731 53.4
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.0e-210 736.5 771 54.5
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.7e-209 733.4 771 54.3
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 2.4e-208 729.6 730 53.7
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 1.6e-207 726.9 712 55.1
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 2.7e-207 726.1 765 53.9
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 4.2e-205 718.8 755 53.9
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 5.5e-205 718.4 716 53.4
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 7.2e-205 718.0 709 56.1
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 1.2e-204 717.2 706 54.4
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 6.1e-204 714.9 756 53.7
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 1.5e-202 710.3 725 53.9
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 7.5e-202 708.0 709 55.1
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 1.7e-201 706.8 754 53.8
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 3.7e-201 705.7 756 53.4
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 1.4e-200 703.7 709 53.9
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 1.2e-199 700.7 704 54.4
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 4.5e-199 698.7 708 53.8
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 1.7e-198 696.8 671 56.3
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 1.7e-198 696.8 710 53.5
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 1.1e-197 694.1 705 53.0
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 5.5e-197 691.8 1109 40.8
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 9.5e-197 691.0 708 53.1
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 2.8e-196 689.5 753 53.1
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.6e-196 689.1 690 54.2
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 1.0e-195 687.6 767 50.2
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 1.2e-194 684.1 708 53.0
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 2.6e-194 682.9 773 51.4
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 1.7e-193 680.2 695 53.4
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 1.1e-192 677.6 763 51.4
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 9.2e-192 674.5 704 53.3
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 2.0e-191 673.3 707 51.5
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 3.5e-191 672.5 771 49.5
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 4.5e-191 672.2 658 56.1
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 2.5e-189 666.4 670 52.7
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 7.3e-189 664.8 745 51.5
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 1.2e-188 664.1 766 49.9
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 8.0e-188 661.4 723 51.0
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 5.2e-187 658.7 756 50.7
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 6.8e-187 658.3 723 50.9
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 7.5e-186 654.8 682 54.1
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 9.8e-186 654.4 755 50.3
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 1.7e-185 653.7 757 50.6
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 2.2e-185 653.3 757 50.6
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 2.2e-185 653.3 694 52.9
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 3.2e-184 649.4 757 50.2
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 1.6e-183 647.1 706 50.8
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 2.7e-183 646.4 686 52.0
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 2.7e-183 646.4 711 52.0
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 4.6e-183 645.6 703 52.1
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 4.3e-181 639.0 754 49.5
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 2.8e-180 636.3 694 51.0
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 1.4e-179 634.0 606 56.6
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 2.3e-179 633.3 634 53.3
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 3.7e-177 625.9 764 48.0
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.2e-175 620.9 653 53.4
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 6.6e-174 615.1 715 48.4
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 7.3e-165 585.1 652 51.4
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 1.3e-161 574.3 773 46.7
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 1.2e-159 567.8 660 51.4
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 4.3e-149 532.7 655 46.9
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.6e-146 523.5 630 48.6
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 3.4e-146 523.1 663 46.2
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 3.0e-142 510.0 643 44.6
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.3e-129 468.0 516 50.0
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 4.7e-103 379.8 406 53.7
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 5.2e-102 376.3 676 38.2
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 1.4e-99 368.2 253 70.4
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 3.8e-97 360.1 491 46.2
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 4.8e-92 343.2 421 47.3
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 2.1e-87 327.8 348 52.3
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 7.5e-85 319.3 608 36.0
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 1.2e-82 312.0 740 33.0
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 2.3e-81 307.8 279 58.1
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 1.2e-79 302.0 677 31.5
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.5e-74 283.9 642 35.4
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 1.3e-65 255.4 571 32.9
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 7.5e-53 213.0 610 32.0
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 5.6e-40 170.2 629 27.5
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.3e-33 149.1 162 51.2
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 3.3e-32 144.4 166 53.6
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 2.6e-29 134.8 204 40.2
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 1.9e-27 128.6 640 22.7
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 9.3e-27 126.3 381 27.8
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.2e-26 125.9 145 49.7
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 1.9e-24 118.6 668 23.4
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 9.6e-24 116.3 126 51.6
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 3.8e-20 104.4 181 44.2
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 1.8e-17 95.5 84 59.5
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.2e-13 82.8 228 33.8
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 3.4e-13 81.3 117 43.6
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 1.7e-12 79.0 125 39.2
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 7.9e-10 70.1 65 50.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.6e-07 62.4 50 54.0


User provided reference genes

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