Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 8.3e-188 660.2 332 100.0
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 1.5e-157 559.7 338 82.2
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 4.9e-156 554.7 330 82.1
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 4.6e-154 548.1 330 81.2
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.5e-152 543.1 333 80.2
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.3e-152 542.0 331 80.4
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.6e-151 539.7 332 80.1
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 2.1e-151 539.3 334 80.5
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.8e-150 536.2 331 79.5
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 7.6e-149 530.8 330 79.7
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.9e-148 528.9 334 79.0
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 4.9e-148 528.1 333 79.0
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.4e-147 524.6 332 78.6
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.2e-146 523.5 333 77.5
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 1.6e-146 523.1 331 81.0
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 2.7e-146 522.3 332 78.0
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 3.5e-146 521.9 333 78.4
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 4.6e-146 521.5 333 77.8
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 6.6e-145 517.7 333 75.7
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 6.6e-145 517.7 333 79.3
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 3.3e-144 515.4 333 76.3
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 5.6e-144 514.6 333 75.1
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 5.6e-144 514.6 334 77.8
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 2.8e-143 512.3 333 75.7
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 8.1e-143 510.8 333 76.3
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.2e-142 508.1 319 79.3
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 9.0e-142 507.3 333 76.3
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.5e-141 506.5 338 78.1
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 2.0e-141 506.1 333 74.5
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 1.3e-140 503.4 333 75.1
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 1.7e-140 503.1 333 76.3
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 1.7e-140 503.1 332 73.8
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.7e-140 503.1 335 76.4
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 2.9e-140 502.3 333 74.2
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 3.8e-140 501.9 324 77.5
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 3.8e-140 501.9 337 76.3
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 3.8e-140 501.9 334 74.6
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 4.9e-140 501.5 334 74.9
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 6.4e-140 501.1 335 75.8
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 2.4e-139 499.2 333 76.3
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 5.4e-139 498.0 335 75.2
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.2e-138 496.9 335 75.2
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.2e-138 496.9 330 75.2
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 1.2e-138 496.9 335 74.3
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.0e-137 493.8 337 74.2
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.7e-137 493.0 335 74.6
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.3e-137 492.7 332 74.4
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.3e-137 492.7 333 74.5
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 3.0e-137 492.3 341 75.7
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 3.0e-137 492.3 336 73.8
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 5.1e-137 491.5 334 74.6
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 8.7e-137 490.7 336 75.3
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.1e-136 490.3 334 74.3
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.1e-136 490.3 333 74.2
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.1e-136 490.3 340 72.6
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.1e-136 490.3 340 72.6
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 3.3e-136 488.8 334 74.0
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.6e-136 488.0 335 74.3
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 7.3e-136 487.6 334 73.4
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 9.6e-136 487.3 336 73.8
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.8e-135 485.0 333 72.7
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.1e-134 482.3 339 74.0
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.1e-134 482.3 330 73.6
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 5.3e-134 481.5 334 72.2
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 5.3e-134 481.5 334 72.5
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 2.0e-133 479.6 333 73.9
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 3.4e-133 478.8 340 72.9
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 2.9e-132 475.7 335 72.2
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 3.8e-132 475.3 334 71.3
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 1.4e-131 473.4 335 71.0
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 2.4e-131 472.6 332 72.3
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 2.4e-131 472.6 332 72.6
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 7.1e-131 471.1 344 72.4
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 6.0e-130 468.0 331 70.4
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.0e-130 468.0 330 72.1
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 6.0e-130 468.0 333 72.1
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 2.3e-129 466.1 379 64.9
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 3.9e-129 465.3 334 71.0
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 6.7e-129 464.5 339 71.4
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 1.1e-128 463.8 324 71.9
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.1e-128 463.8 354 67.2
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.5e-128 462.6 329 71.7
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.5e-128 462.6 329 71.7
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 4.3e-128 461.8 337 71.5
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.8e-127 459.1 337 70.9
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 2.8e-127 459.1 342 70.2
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 6.2e-127 458.0 341 70.1
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.1e-126 457.2 337 69.7
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 1.1e-126 457.2 337 69.4
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 1.8e-126 456.4 338 68.9
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 2.0e-125 453.0 337 69.1
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 7.6e-125 451.1 333 67.3
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 9.9e-125 450.7 339 67.3
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.1e-123 447.2 342 68.7
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.4e-123 446.8 335 68.4
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.9e-123 446.4 340 66.5
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 9.3e-123 444.1 339 67.8
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 4.6e-122 441.8 346 67.6
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 4.3e-120 435.3 355 63.1
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 4.3e-120 435.3 355 63.1
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 9.0e-118 427.6 332 66.6
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 2.2e-116 422.9 340 66.2
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 7.9e-114 414.5 358 63.1
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 6.7e-113 411.4 262 78.6
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 6.7e-113 411.4 359 64.9
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 9.7e-112 407.5 337 62.3
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 2.4e-110 402.9 353 62.3
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.5e-109 400.2 352 61.6
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 3.3e-104 382.5 337 59.1
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 4.8e-103 378.6 342 58.5
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 4.8e-103 378.6 282 69.1
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 8.2e-103 377.9 346 59.0
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 3.1e-102 375.9 355 57.7
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.6e-98 363.6 322 62.1
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 4.7e-98 362.1 329 58.4
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 2.4e-94 349.7 319 58.6
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.8e-86 323.6 230 71.3
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 5.7e-80 302.0 263 62.0
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 8.2e-79 298.1 244 66.0
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 9.4e-75 284.6 212 70.3
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 8.0e-74 281.6 352 48.3
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 2.8e-71 273.1 268 60.1
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 3.7e-71 272.7 184 72.3
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 2.6e-64 250.0 190 69.5
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.7e-63 246.1 355 43.9
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 2.7e-61 240.0 379 44.1
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 8.6e-60 235.0 344 43.6
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 3.0e-57 226.5 350 43.1
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.5e-56 224.2 347 42.7
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 7.5e-56 221.9 215 57.2
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 2.7e-53 213.4 226 52.7
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 6.4e-47 192.2 175 53.1
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 9.2e-46 188.3 368 37.5
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.7e-39 167.5 367 35.7
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 1.3e-36 157.9 333 38.1
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 7.6e-32 142.1 119 66.4
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 5.6e-27 125.9 364 32.4
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 3.1e-25 120.2 134 48.5
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 3.1e-25 120.2 87 63.2
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 3.4e-24 116.7 87 62.1
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 4.4e-24 116.3 147 45.6
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 7.6e-24 115.5 85 65.9
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.9e-23 112.8 103 60.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 4.9e-23 112.8 106 52.8
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 4.9e-23 112.8 125 45.6
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.0e-20 105.1 55 85.5
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.5e-19 101.3 72 63.9
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.3e-19 99.8 80 65.0
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 9.0e-17 92.0 148 35.8
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.2e-16 91.7 60 75.0
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 2.2e-15 87.4 41 95.1
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 7.1e-14 82.4 333 26.4
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.8e-10 69.7 163 31.3
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 6.9e-09 65.9 43 69.8
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 4.5e-08 63.2 53 52.8
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 5.5e-06 56.2 38 68.4


User provided reference genes

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