Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3112 Acer truncatum HOM05D004669 ORTHO05D005767 1.1e-86 323.2 159 100.0
Atru.chr1.3106 Acer truncatum HOM05D004669 ORTHO05D005767 2.9e-58 228.8 159 76.7
MD17G1203900 Malus domestica HOM05D004669 ORTHO05D005767 1.2e-54 216.9 159 73.0
Potri.001G173500 Populus trichocarpa HOM05D004669 ORTHO05D005767 1.5e-54 216.5 159 72.3
Prupe.3G078900 Prunus persica HOM05D004669 ORTHO05D005767 3.4e-54 215.3 159 73.0
QL05p027590 Quercus lobata HOM05D004669 ORTHO05D005767 3.4e-54 215.3 159 71.7
Ciclev10024861m.g Citrus clementina HOM05D004669 ORTHO05D005767 4.4e-54 214.9 159 71.1
Cpa.g.sc10.221 Carica papaya HOM05D004669 ORTHO05D005767 5.7e-54 214.5 159 71.7
Cc04_g03970 Coffea canephora HOM05D004669 ORTHO05D005767 7.5e-54 214.2 159 71.7
Potri.003G060500 Populus trichocarpa HOM05D004669 ORTHO05D005767 1.7e-53 213.0 159 71.1
PGR031G2027 Punica granatum HOM05D004669 ORTHO05D005767 1.7e-53 213.0 159 71.7
CANSAT56G1977 Cannabis sativa HOM05D004669 ORTHO05D005767 2.2e-53 212.6 159 70.4
Manes.11G052400 Manihot esculenta HOM05D004669 ORTHO05D005767 4.9e-53 211.5 159 70.4
Rhsim08G0216600 Rhododendron simsii HOM05D004669 ORTHO05D005767 8.3e-53 210.7 159 70.4
Sabra01G0138300 Salix brachista HOM05D004669 ORTHO05D005767 8.3e-53 210.7 159 71.1
Actinidia01772 Actinidia chinensis HOM05D004669 ORTHO05D005767 1.1e-52 210.3 159 70.4
FvH4_6g30400 Fragaria vesca HOM05D004669 ORTHO05D005767 1.1e-52 210.3 159 69.8
FAN02G3057 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.1e-52 210.3 159 69.8
FAN05G0230 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.1e-52 210.3 159 69.8
FAN09G4623 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.1e-52 210.3 159 69.8
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 1.4e-52 209.9 159 68.6
GSVIVG01017243001 Vitis vinifera HOM05D004669 ORTHO05D005767 1.4e-52 209.9 159 69.2
Lj5A68G59 Lonicera japonica HOM05D004669 ORTHO05D005767 2.4e-52 209.1 159 69.2
FAN14G3011 Fragaria x ananassa HOM05D004669 ORTHO05D005767 4.1e-52 208.4 159 69.2
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 5.4e-52 208.0 159 70.4
PGSC0003DMG400005691 Solanum tuberosum HOM05D004669 ORTHO05D005767 5.4e-52 208.0 159 69.8
COL.COLO4_12887 Corchorus olitorius HOM05D004669 ORTHO05D005767 7.0e-52 207.6 159 69.8
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 7.0e-52 207.6 159 68.6
Solyc03g120080.4 Solanum lycopersicum HOM05D004669 ORTHO05D005767 7.0e-52 207.6 159 69.2
Sopen03g038950 Solanum pennellii HOM05D004669 ORTHO05D005767 7.0e-52 207.6 159 69.2
RcHm_v2.0_Chr2g0136751 Rosa chinensis HOM05D004669 ORTHO05D005767 9.2e-52 207.2 159 68.6
Oeu052287.2 Olea europaea HOM05D004669 ORTHO05D005767 1.2e-51 206.8 159 69.2
MSTRG.22725 Avicennia marina HOM05D004669 ORTHO05D005767 1.6e-51 206.5 159 70.4
Dinv30566 Davidia involucrata HOM05D004669 ORTHO05D005767 1.6e-51 206.5 159 70.4
CAN.G438.78 Capsicum annuum HOM05D004669 ORTHO05D005767 2.0e-51 206.1 159 69.2
Nitab4.5_0023790g0010 Nicotiana tabacum HOM05D004669 ORTHO05D005767 2.0e-51 206.1 159 67.9
TWI12G0769 Tripterygium wilfordii HOM05D004669 ORTHO05D005767 2.0e-51 206.1 159 67.9
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 2.7e-51 205.7 159 69.8
vmacro18956 Vaccinium macrocarpon HOM05D004669 ORTHO05D005767 3.5e-51 205.3 160 69.4
Aqoxy7G02078 Aquilegia oxysepala HOM05D004669 ORTHO05D005767 4.6e-51 204.9 159 68.6
Nn8g39375 Nelumbo nucifera HOM05D004669 ORTHO05D005767 5.9e-51 204.5 159 68.6
Nitab4.5_0000671g0170 Nicotiana tabacum HOM05D004669 ORTHO05D005767 5.9e-51 204.5 159 67.3
Sc12g0008880 Simmondsia chinensis HOM05D004669 ORTHO05D005767 5.9e-51 204.5 159 67.9
EL10Ac9g21952 Beta vulgaris HOM05D004669 ORTHO05D005767 1.0e-50 203.8 159 67.9
Gohir.D09G084800 Gossypium hirsutum HOM05D004669 ORTHO05D005767 1.0e-50 203.8 159 67.3
Gorai.006G100800 Gossypium raimondii HOM05D004669 ORTHO05D005767 1.0e-50 203.8 159 67.3
Medtr7g076230 Medicago truncatula HOM05D004669 ORTHO05D005767 1.3e-50 203.4 159 69.2
TAR636G0609 Trochodendron aralioides HOM05D004669 ORTHO05D005767 1.3e-50 203.4 159 67.3
SGA_v2.0_scaffold5G02661 Striga asiatica HOM05D004669 ORTHO05D005767 1.7e-50 203.0 159 68.6
Glyma.15G193000 Glycine max HOM05D004669 ORTHO05D005767 2.3e-50 202.6 159 69.8
Gohir.A09G084900 Gossypium hirsutum HOM05D004669 ORTHO05D005767 2.9e-50 202.2 159 66.7
THA.LOC104812492 Tarenaya hassleriana HOM05D004669 ORTHO05D005767 2.9e-50 202.2 159 66.0
VMungo1309G3168 Vigna mungo HOM05D004669 ORTHO05D005767 2.9e-50 202.2 159 67.3
Migut.I00803 Erythranthe guttata HOM05D004669 ORTHO05D005767 8.6e-50 200.7 159 68.6
Peaxi162Scf00015g00456 Petunia axillaris HOM05D004669 ORTHO05D005767 1.1e-49 200.3 159 66.7
AUR62011570 Chenopodium quinoa HOM05D004669 ORTHO05D005767 1.5e-49 199.9 159 67.9
Phvul.009G217600 Phaseolus vulgaris HOM05D004669 ORTHO05D005767 1.9e-49 199.5 159 67.3
Aa31LG7G190 Aethionema arabicum HOM05D004669 ORTHO05D005767 7.3e-49 197.6 159 66.0
BcaC07g38791 Brassica carinata HOM05D004669 ORTHO05D005767 9.5e-49 197.2 159 66.0
A08p31560 Brassica napus HOM05D004669 ORTHO05D005767 9.5e-49 197.2 159 66.0
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 9.5e-49 197.2 159 66.0
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 9.5e-49 197.2 159 66.0
BraA08t35078Z Brassica rapa HOM05D004669 ORTHO05D005767 9.5e-49 197.2 159 66.0
LjContig00155g0017542 Lotus japonicus HOM05D004669 ORTHO05D005767 9.5e-49 197.2 159 66.0
Carub.0001s1524 Capsella rubella HOM05D004669 ORTHO05D005767 1.2e-48 196.8 159 65.4
ClCG06G013830 Citrullus lanatus HOM05D004669 ORTHO05D005767 1.2e-48 196.8 159 65.4
Glyma.09G084600 Glycine max HOM05D004669 ORTHO05D005767 1.2e-48 196.8 159 68.6
Psat0s4195g0120 Pisum sativum HOM05D004669 ORTHO05D005767 1.2e-48 196.8 159 66.7
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 1.6e-48 196.4 159 65.4
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 1.6e-48 196.4 159 65.4
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 1.6e-48 196.4 159 65.4
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 1.6e-48 196.4 159 65.4
CsaV3_4G001370 Cucumis sativus L. HOM05D004669 ORTHO05D005767 2.1e-48 196.1 159 65.4
AUR62016387 Chenopodium quinoa HOM05D004669 ORTHO05D005767 2.8e-48 195.7 158 67.1
Ah.08g209920 Amaranthus hybridus HOM05D004669 ORTHO05D005767 3.6e-48 195.3 159 66.0
AT1G15440 Arabidopsis thaliana HOM05D004669 ORTHO05D005767 3.6e-48 195.3 159 65.4
ClCG07G012820 Citrullus lanatus HOM05D004669 ORTHO05D005767 4.7e-48 194.9 159 65.4
MELO3C017903.2 Cucumis melo HOM05D004669 ORTHO05D005767 6.2e-48 194.5 159 64.8
TAR627G0037 Trochodendron aralioides HOM05D004669 ORTHO05D005767 6.2e-48 194.5 159 64.8
BcaB03g13059 Brassica carinata HOM05D004669 ORTHO05D005767 1.0e-47 193.7 159 64.8
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 1.4e-47 193.4 159 66.7
PSO541G6522 Papaver somniferum HOM05D004669 ORTHO05D005767 1.4e-47 193.4 159 64.8
Sed0027531 Sechium edule HOM05D004669 ORTHO05D005767 1.4e-47 193.4 159 64.2
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 1.8e-47 193.0 159 66.7
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 1.8e-47 193.0 159 66.7
AL1G27560 Arabidopsis lyrata HOM05D004669 ORTHO05D005767 2.3e-47 192.6 159 64.8
Lsat_1_v5_gn_1_33541 Lactuca sativa HOM05D004669 ORTHO05D005767 2.3e-47 192.6 159 65.4
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 3.1e-47 192.2 159 64.8
TPR.G37778 Trifolium pratense HOM05D004669 ORTHO05D005767 3.1e-47 192.2 159 66.0
CARHR016000 Cardamine hirsuta HOM05D004669 ORTHO05D005767 5.2e-47 191.4 159 63.5
Lalb_Chr11g0073441 Lupinus albus HOM05D004669 ORTHO05D005767 8.9e-47 190.7 159 64.2
TAR627G0296 Trochodendron aralioides HOM05D004669 ORTHO05D005767 8.9e-47 190.7 159 63.5
MBI04_g45208_MAGBIO Magnolia biondii HOM05D004669 ORTHO05D005767 1.5e-46 189.9 159 64.2
CDE04G1486 Ceratophyllum demersum HOM05D004669 ORTHO05D005767 2.6e-46 189.1 159 63.5
Thhalv10006752m.g Eutrema salsugineum HOM05D004669 ORTHO05D005767 2.6e-46 189.1 159 62.3
Sed0010016 Sechium edule HOM05D004669 ORTHO05D005767 2.6e-46 189.1 159 63.5
Ca_02514_v3 Cicer arietinum L. HOM05D004669 ORTHO05D005767 5.8e-46 188.0 159 66.0
Sed0001284 Sechium edule HOM05D004669 ORTHO05D005767 9.8e-46 187.2 159 62.9
HanXRQChr04g0096711 Helianthus annuus HOM05D004669 ORTHO05D005767 2.2e-45 186.0 159 63.5
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 2.2e-45 186.0 159 63.5
Sp1g13810 Schrenkiella parvula HOM05D004669 ORTHO05D005767 6.4e-45 184.5 159 61.6
Psat3g100960 Pisum sativum HOM05D004669 ORTHO05D005767 4.1e-44 181.8 158 63.3
CiPaw.02G154600 Carya illinoinensis HOM05D004669 ORTHO05D005767 9.2e-44 180.6 158 62.7
ECA247G3964 Erigeron canadensis HOM05D004669 ORTHO05D005767 9.2e-44 180.6 159 61.6
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 2.7e-43 179.1 159 59.7
ECA038G0001 Erigeron canadensis HOM05D004669 ORTHO05D005767 3.5e-43 178.7 159 61.0
ECA247G1145 Erigeron canadensis HOM05D004669 ORTHO05D005767 3.5e-43 178.7 159 61.0
Zm00001eb293800 Zea mays HOM05D004669 ORTHO05D005767 1.7e-42 176.4 159 58.5
Cfa002013 Carpinus fangiana HOM05D004669 ORTHO05D005767 1.1e-41 173.7 159 61.6
Eucgr.J03040 Eucalyptus grandis HOM05D004669 ORTHO05D005767 1.5e-41 173.3 158 61.4
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.9e-41 172.9 159 59.7
Haze_16509 Corylus avellana HOM05D004669 ORTHO05D005767 9.5e-41 170.6 159 61.0
HPP92_024437 Vanilla planifolia HOM05D004669 ORTHO05D005767 6.2e-40 167.9 159 57.2
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 1.1e-39 167.2 159 55.3
Sed0020458 Sechium edule HOM05D004669 ORTHO05D005767 1.5e-38 163.3 168 56.0
AagrBONN_evm.TU.Sc2ySwM_228.5273 Anthoceros agrestis HOM05D004669 ORTHO05D005767 2.6e-38 162.5 159 54.7
ECA247G2328 Erigeron canadensis HOM05D004669 ORTHO05D005767 1.7e-37 159.8 159 56.6
Manes.04G117100 Manihot esculenta HOM05D004669 ORTHO05D005767 1.9e-33 146.4 157 52.9
PSO832G2238 Papaver somniferum HOM05D004669 ORTHO05D005767 6.2e-32 141.4 93 75.3
PSO832G4299 Papaver somniferum HOM05D004669 ORTHO05D005767 6.2e-32 141.4 93 75.3
CBR_g51007 Chara braunii HOM05D004669 ORTHO05D005767 1.4e-31 140.2 158 48.7
HanXRQChr04g0097231 Helianthus annuus HOM05D004669 ORTHO05D005767 3.1e-31 139.0 92 75.0
Pp3c7_9990 Physcomitrium patens HOM05D004669 ORTHO05D005767 2.6e-30 136.0 159 50.9
Mapoly0001s0129 Marchantia polymorpha HOM05D004669 ORTHO05D005767 4.4e-30 135.2 159 49.7
Psat4g082440 Pisum sativum HOM05D004669 ORTHO05D005767 1.3e-26 123.6 112 63.4
MD06G1214300 Malus domestica HOM05D004669 ORTHO05D005767 5.1e-26 121.7 105 65.7
MD09G1221500 Malus domestica HOM05D004669 ORTHO05D005767 5.1e-26 121.7 105 65.7
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 3.8e-21 105.5 160 40.6
Os05g0519500 Oryza sativa ssp. japonica HOM05D004669 ORTHO05D005767 2.1e-19 99.8 103 54.4
unitig_0.g1124 Utricularia gibba HOM05D004669 ORTHO05D005767 1.5e-17 93.6 60 75.0
MCO13G313 Micromonas commoda HOM05D004669 ORTHO05D005767 2.1e-11 73.2 174 29.3
FAN26G1001 Fragaria x ananassa HOM05D004669 ORTHO05D005767 6.6e-10 68.2 38 84.2
SMO174G0024 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.1e-09 67.4 85 48.2
SMO336G0019 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 3.3e-09 65.9 87 46.0
Atru.chr3.3601 Acer truncatum HOM05D000113 ORTHO05D001798 9.6e-09 64.3 43 74.4
SMO347G0477 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 9.6e-09 64.3 47 66.0
Atru.chr1.943 Acer truncatum HOM05D000113 ORTHO05D001798 2.1e-08 63.2 29 100.0
SMO337G0094 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 8.1e-08 61.2 38 71.1
SMO336G0033 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.1e-07 60.8 128 36.7


User provided reference genes

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