Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3106 Acer truncatum HOM05D004669 ORTHO05D005767 1.1e-93 346.7 176 100.0
MD17G1203900 Malus domestica HOM05D004669 ORTHO05D005767 4.5e-68 261.5 137 95.6
Potri.001G173500 Populus trichocarpa HOM05D004669 ORTHO05D005767 1.0e-67 260.4 137 93.4
QL05p027590 Quercus lobata HOM05D004669 ORTHO05D005767 1.3e-67 260.0 137 94.2
Ciclev10024861m.g Citrus clementina HOM05D004669 ORTHO05D005767 1.7e-67 259.6 137 92.7
Prupe.3G078900 Prunus persica HOM05D004669 ORTHO05D005767 2.3e-67 259.2 137 94.2
Cpa.g.sc10.221 Carica papaya HOM05D004669 ORTHO05D005767 3.8e-67 258.5 137 92.7
Potri.003G060500 Populus trichocarpa HOM05D004669 ORTHO05D005767 1.1e-66 256.9 137 92.0
PGR031G2027 Punica granatum HOM05D004669 ORTHO05D005767 1.9e-66 256.1 137 92.0
Actinidia01772 Actinidia chinensis HOM05D004669 ORTHO05D005767 4.2e-66 255.0 137 92.7
Cc04_g03970 Coffea canephora HOM05D004669 ORTHO05D005767 4.2e-66 255.0 137 91.2
FvH4_6g30400 Fragaria vesca HOM05D004669 ORTHO05D005767 4.2e-66 255.0 137 92.0
FAN02G3057 Fragaria x ananassa HOM05D004669 ORTHO05D005767 4.2e-66 255.0 137 92.0
FAN05G0230 Fragaria x ananassa HOM05D004669 ORTHO05D005767 4.2e-66 255.0 137 92.0
FAN09G4623 Fragaria x ananassa HOM05D004669 ORTHO05D005767 4.2e-66 255.0 137 92.0
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 5.5e-66 254.6 137 90.5
GSVIVG01017243001 Vitis vinifera HOM05D004669 ORTHO05D005767 5.5e-66 254.6 137 91.2
Manes.11G052400 Manihot esculenta HOM05D004669 ORTHO05D005767 7.2e-66 254.2 137 90.5
CANSAT56G1977 Cannabis sativa HOM05D004669 ORTHO05D005767 1.2e-65 253.4 137 91.2
Rhsim08G0216600 Rhododendron simsii HOM05D004669 ORTHO05D005767 1.2e-65 253.4 137 90.5
FAN14G3011 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.6e-65 253.1 137 91.2
Lj5A68G59 Lonicera japonica HOM05D004669 ORTHO05D005767 1.6e-65 253.1 137 89.8
Sabra01G0138300 Salix brachista HOM05D004669 ORTHO05D005767 2.1e-65 252.7 137 91.2
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 2.8e-65 252.3 137 90.5
RcHm_v2.0_Chr2g0136751 Rosa chinensis HOM05D004669 ORTHO05D005767 3.6e-65 251.9 137 90.5
COL.COLO4_12887 Corchorus olitorius HOM05D004669 ORTHO05D005767 4.7e-65 251.5 137 90.5
Nitab4.5_0023790g0010 Nicotiana tabacum HOM05D004669 ORTHO05D005767 8.0e-65 250.8 137 89.8
TWI12G0769 Tripterygium wilfordii HOM05D004669 ORTHO05D005767 2.3e-64 249.2 137 87.6
vmacro18956 Vaccinium macrocarpon HOM05D004669 ORTHO05D005767 2.3e-64 249.2 138 89.9
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 3.0e-64 248.8 137 91.2
Solyc03g120080.4 Solanum lycopersicum HOM05D004669 ORTHO05D005767 3.0e-64 248.8 137 90.5
Sopen03g038950 Solanum pennellii HOM05D004669 ORTHO05D005767 3.0e-64 248.8 137 90.5
CAN.G438.78 Capsicum annuum HOM05D004669 ORTHO05D005767 4.0e-64 248.4 137 89.1
Oeu052287.2 Olea europaea HOM05D004669 ORTHO05D005767 4.0e-64 248.4 137 89.8
Sc12g0008880 Simmondsia chinensis HOM05D004669 ORTHO05D005767 4.0e-64 248.4 137 88.3
PGSC0003DMG400005691 Solanum tuberosum HOM05D004669 ORTHO05D005767 4.0e-64 248.4 137 89.8
MSTRG.22725 Avicennia marina HOM05D004669 ORTHO05D005767 5.2e-64 248.1 137 90.5
TAR636G0609 Trochodendron aralioides HOM05D004669 ORTHO05D005767 5.2e-64 248.1 137 89.1
Gohir.A09G084900 Gossypium hirsutum HOM05D004669 ORTHO05D005767 1.2e-63 246.9 137 88.3
Gohir.D09G084800 Gossypium hirsutum HOM05D004669 ORTHO05D005767 1.2e-63 246.9 137 88.3
Gorai.006G100800 Gossypium raimondii HOM05D004669 ORTHO05D005767 1.2e-63 246.9 137 88.3
Nitab4.5_0000671g0170 Nicotiana tabacum HOM05D004669 ORTHO05D005767 1.2e-63 246.9 137 88.3
THA.LOC104812492 Tarenaya hassleriana HOM05D004669 ORTHO05D005767 1.2e-63 246.9 137 87.6
VMungo1309G3168 Vigna mungo HOM05D004669 ORTHO05D005767 1.2e-63 246.9 137 89.1
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 1.5e-63 246.5 137 89.1
Aqoxy7G02078 Aquilegia oxysepala HOM05D004669 ORTHO05D005767 2.6e-63 245.7 137 88.3
Dinv30566 Davidia involucrata HOM05D004669 ORTHO05D005767 4.4e-63 245.0 137 89.8
Medtr7g076230 Medicago truncatula HOM05D004669 ORTHO05D005767 4.4e-63 245.0 137 89.1
AUR62011570 Chenopodium quinoa HOM05D004669 ORTHO05D005767 5.7e-63 244.6 137 89.8
Nn8g39375 Nelumbo nucifera HOM05D004669 ORTHO05D005767 5.7e-63 244.6 137 89.1
SGA_v2.0_scaffold5G02661 Striga asiatica HOM05D004669 ORTHO05D005767 5.7e-63 244.6 137 88.3
EL10Ac9g21952 Beta vulgaris HOM05D004669 ORTHO05D005767 1.3e-62 243.4 137 87.6
Phvul.009G217600 Phaseolus vulgaris HOM05D004669 ORTHO05D005767 1.3e-62 243.4 137 87.6
Glyma.15G193000 Glycine max HOM05D004669 ORTHO05D005767 1.7e-62 243.0 137 89.1
Peaxi162Scf00015g00456 Petunia axillaris HOM05D004669 ORTHO05D005767 1.7e-62 243.0 137 86.1
Migut.I00803 Erythranthe guttata HOM05D004669 ORTHO05D005767 3.7e-62 241.9 137 88.3
LjContig00155g0017542 Lotus japonicus HOM05D004669 ORTHO05D005767 3.7e-62 241.9 137 87.6
ClCG06G013830 Citrullus lanatus HOM05D004669 ORTHO05D005767 4.9e-62 241.5 137 86.9
CsaV3_4G001370 Cucumis sativus L. HOM05D004669 ORTHO05D005767 8.3e-62 240.7 137 86.9
Glyma.09G084600 Glycine max HOM05D004669 ORTHO05D005767 8.3e-62 240.7 137 89.1
AUR62016387 Chenopodium quinoa HOM05D004669 ORTHO05D005767 1.4e-61 240.0 136 89.0
BcaC07g38791 Brassica carinata HOM05D004669 ORTHO05D005767 1.8e-61 239.6 137 85.4
A08p31560 Brassica napus HOM05D004669 ORTHO05D005767 1.8e-61 239.6 137 85.4
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 1.8e-61 239.6 137 85.4
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 1.8e-61 239.6 137 85.4
BraA08t35078Z Brassica rapa HOM05D004669 ORTHO05D005767 1.8e-61 239.6 137 85.4
AT1G15440 Arabidopsis thaliana HOM05D004669 ORTHO05D005767 2.4e-61 239.2 137 85.4
MELO3C017903.2 Cucumis melo HOM05D004669 ORTHO05D005767 2.4e-61 239.2 137 86.1
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 3.1e-61 238.8 137 84.7
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 3.1e-61 238.8 137 84.7
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 3.1e-61 238.8 137 84.7
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 3.1e-61 238.8 137 84.7
Carub.0001s1524 Capsella rubella HOM05D004669 ORTHO05D005767 4.1e-61 238.4 137 83.9
Psat0s4195g0120 Pisum sativum HOM05D004669 ORTHO05D005767 4.1e-61 238.4 137 85.4
Ah.08g209920 Amaranthus hybridus HOM05D004669 ORTHO05D005767 5.4e-61 238.0 137 86.9
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 1.2e-60 236.9 137 86.9
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 1.2e-60 236.9 137 86.9
AL1G27560 Arabidopsis lyrata HOM05D004669 ORTHO05D005767 1.6e-60 236.5 137 84.7
Lsat_1_v5_gn_1_33541 Lactuca sativa HOM05D004669 ORTHO05D005767 1.6e-60 236.5 137 85.4
PSO541G6522 Papaver somniferum HOM05D004669 ORTHO05D005767 1.6e-60 236.5 137 83.9
BcaB03g13059 Brassica carinata HOM05D004669 ORTHO05D005767 2.0e-60 236.1 137 83.9
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 2.7e-60 235.7 137 87.6
ClCG07G012820 Citrullus lanatus HOM05D004669 ORTHO05D005767 2.7e-60 235.7 137 85.4
Lalb_Chr11g0073441 Lupinus albus HOM05D004669 ORTHO05D005767 5.9e-60 234.6 137 84.7
Sed0027531 Sechium edule HOM05D004669 ORTHO05D005767 5.9e-60 234.6 137 83.9
TAR627G0037 Trochodendron aralioides HOM05D004669 ORTHO05D005767 7.8e-60 234.2 137 83.2
TAR627G0296 Trochodendron aralioides HOM05D004669 ORTHO05D005767 7.8e-60 234.2 137 83.9
CARHR016000 Cardamine hirsuta HOM05D004669 ORTHO05D005767 1.0e-59 233.8 137 82.5
Sed0010016 Sechium edule HOM05D004669 ORTHO05D005767 1.0e-59 233.8 137 83.9
TPR.G37778 Trifolium pratense HOM05D004669 ORTHO05D005767 1.0e-59 233.8 137 85.4
MBI04_g45208_MAGBIO Magnolia biondii HOM05D004669 ORTHO05D005767 1.3e-59 233.4 137 84.7
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 1.7e-59 233.0 137 83.2
Thhalv10006752m.g Eutrema salsugineum HOM05D004669 ORTHO05D005767 2.9e-59 232.3 137 82.5
Sed0001284 Sechium edule HOM05D004669 ORTHO05D005767 1.1e-58 230.3 137 82.5
HanXRQChr04g0096711 Helianthus annuus HOM05D004669 ORTHO05D005767 1.5e-58 229.9 137 83.2
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 1.5e-58 229.9 137 83.2
Ca_02514_v3 Cicer arietinum L. HOM05D004669 ORTHO05D005767 1.9e-58 229.6 137 85.4
Atru.chr1.3112 Acer truncatum HOM05D004669 ORTHO05D005767 9.5e-58 227.3 159 76.7
CDE04G1486 Ceratophyllum demersum HOM05D004669 ORTHO05D005767 1.6e-57 226.5 137 79.6
CiPaw.02G154600 Carya illinoinensis HOM05D004669 ORTHO05D005767 4.7e-57 224.9 136 83.8
Sp1g13810 Schrenkiella parvula HOM05D004669 ORTHO05D005767 4.7e-57 224.9 137 79.6
ECA247G3964 Erigeron canadensis HOM05D004669 ORTHO05D005767 3.0e-56 222.2 137 80.3
Aa31LG7G190 Aethionema arabicum HOM05D004669 ORTHO05D005767 4.0e-56 221.9 156 73.1
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 8.9e-56 220.7 137 78.8
ECA038G0001 Erigeron canadensis HOM05D004669 ORTHO05D005767 8.9e-56 220.7 137 79.6
ECA247G1145 Erigeron canadensis HOM05D004669 ORTHO05D005767 8.9e-56 220.7 137 79.6
Psat3g100960 Pisum sativum HOM05D004669 ORTHO05D005767 4.4e-55 218.4 140 79.3
Cfa002013 Carpinus fangiana HOM05D004669 ORTHO05D005767 5.7e-55 218.0 137 81.8
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.4e-53 213.4 137 77.4
Zm00001eb293800 Zea mays HOM05D004669 ORTHO05D005767 1.8e-53 213.0 137 76.6
Haze_16509 Corylus avellana HOM05D004669 ORTHO05D005767 5.4e-53 211.5 137 80.3
HPP92_024437 Vanilla planifolia HOM05D004669 ORTHO05D005767 9.2e-53 210.7 137 76.6
Sed0020458 Sechium edule HOM05D004669 ORTHO05D005767 5.9e-52 208.0 146 74.0
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 1.3e-51 206.8 137 74.5
Eucgr.J03040 Eucalyptus grandis HOM05D004669 ORTHO05D005767 1.8e-48 196.4 136 76.5
AagrBONN_evm.TU.Sc2ySwM_228.5273 Anthoceros agrestis HOM05D004669 ORTHO05D005767 4.0e-48 195.3 137 70.1
CBR_g51007 Chara braunii HOM05D004669 ORTHO05D005767 2.3e-43 179.5 136 64.7
Manes.04G117100 Manihot esculenta HOM05D004669 ORTHO05D005767 6.6e-43 177.9 134 68.7
Pp3c7_9990 Physcomitrium patens HOM05D004669 ORTHO05D005767 5.6e-42 174.9 137 66.4
Mapoly0001s0129 Marchantia polymorpha HOM05D004669 ORTHO05D005767 1.4e-40 170.2 137 63.5
ECA247G2328 Erigeron canadensis HOM05D004669 ORTHO05D005767 2.0e-39 166.4 143 63.6
HanXRQChr04g0097231 Helianthus annuus HOM05D004669 ORTHO05D005767 1.3e-38 163.7 105 77.1
MD06G1214300 Malus domestica HOM05D004669 ORTHO05D005767 1.0e-35 154.1 82 93.9
MD09G1221500 Malus domestica HOM05D004669 ORTHO05D005767 1.0e-35 154.1 82 93.9
Psat4g082440 Pisum sativum HOM05D004669 ORTHO05D005767 1.3e-35 153.7 89 86.5
PSO832G2238 Papaver somniferum HOM05D004669 ORTHO05D005767 6.6e-35 151.4 93 79.6
PSO832G4299 Papaver somniferum HOM05D004669 ORTHO05D005767 6.6e-35 151.4 93 79.6
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 9.9e-31 137.5 138 50.7
Os05g0519500 Oryza sativa ssp. japonica HOM05D004669 ORTHO05D005767 2.4e-29 132.9 80 82.5
MCO13G313 Micromonas commoda HOM05D004669 ORTHO05D005767 3.2e-21 105.9 152 39.5
unitig_0.g1124 Utricularia gibba HOM05D004669 ORTHO05D005767 7.8e-20 101.3 61 82.0
SMO174G0024 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 3.0e-19 99.4 62 77.4
SMO336G0019 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 5.1e-19 98.6 64 75.0
SMO336G0033 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 5.6e-18 95.1 105 51.4
FAN26G1001 Fragaria x ananassa HOM05D004669 ORTHO05D005767 2.4e-16 89.7 46 95.7
SMO337G0094 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.6e-12 77.0 47 74.5
SMO347G0477 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.1e-10 70.9 48 68.8
PRCOL_00000917 Prasinoderma coloniale HOM05D004669 ORTHO05D005767 7.6e-07 58.2 132 32.6
HanXRQChr14g0426971 Helianthus annuus HOM05D004669 ORTHO05D005767 8.4e-06 54.7 40 65.0


User provided reference genes

Program Settings